Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000157.1

Orthogroup ID

OG0010274

Physical Location & Seq

Genomic Coordinates Forward (+)

11308 .. 14034

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000157.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

atggagacccaactggtggacctctgcttaaaagcggcgtgtgaaagcagagacagcgtcgagaaatggcggaggcagcggcggagtctggagcacttgccttctcagctcgccgacgctctcctccgtcgcctcatctctcgtcgccttctcttcccttcgttgctcgaggtgttcaaacacagtgcagaggagattgatctgagaggcgacaacaacgtggacgccgaatggtttgcatacattggagcatttcgtcatctccgaagtttgaatgtctctggctgccgtaaactcacaagctcagctctttgggctgtagcagggatgaggagtttaagggagatggatctttcgagatgctccaaggttaatgatgctggcattaggcatctttcatctgttacaactttggaaaagttatggatttcggagacgggggtgtctgctaaaggggttatgcttctctcttcgcttggcaacttgtctgttctcgacttgggtggtttgcctgtcactgatcaagcactcagttctctccaggtacttactaaactccagtatcttgacctttgggggagtaacatatctgacaagggtgctgctcttcttcatatgttccctaggttgagtttcctcaatctagcttggaccagcgtcacaaagttgccaaattggttaacccttgaatgcttaaacatgagtaactgtacaataaatctacttgaaggacataatggtaaagctcctttagtcaagcttattgtttctggagctacatttggagaagaggttgctgatttccattatgtagaaacaacccttttaacctttttggatctttccaagtctacaattctagacttcagcttcttatctcatctaaatgctctggaacacttggatctcagctctactgtgataggagatgattcgcttcaacttattgcatgtgttggagtgaatttgaaatatctgaatcttaacaacaccaaagtaagctctgcaggagttggaaatttaacagggcgtgtacctaatcttcaggttttgtctatatcacatacatcagtagatgatgttaccatatcttacattgggatgatgccttctctgaaggttattgacctgagcaataccaacattaaaggtgtcatttaccaggcagagactgtgcctgtgcgtgagcctgagcctgagcctgagcctgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcaccctttgacaagcttcccaaagttaagccatttatctcttaaaagtgcttctcttacagacatctcccttaactacgtgtcatccatatcaaagctgacaaatgtctgcattcatgatggtgttctgacaaactctgggctcaattcattcaaacccccagcaactcttagaatgatggacctgaggggttgttggctcttaactgaggatgctatcacatccttctctaaaactcacccccagattgaagtatggcatgatcttgttcacatctcacgatcgaaccagactgtttgtaatactgcaccttcttcaagatcaactttgaggacttcacaagtgaagaagaagcatgaaagtattcccatgttggaatgttttttagatcaaagattgaagtatagcagagaagagctcctttccatgcggttctcgtctgtttcccttgcagcttctattgatagcggcattggaatatgcaacacacaatcggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 LRR_8

Protein Analysis

592

Amino Acids

65.89

Weight (kDa)

6.0

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23840
fragaria_vesca	FvH4_5g04510 FvH4_5g04510 FvH4_5g04510 FvH4_5g04510
malus_domestica	MD14G1128100.v1.1
prunus_persica	Prupe.5G118200_v2.0.a1 Prupe.5G118200_v2.0.a1 Prupe.5G118200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194941
rosa_laevigata	RLG00000004154
rosa_multiflora	Rmu_co8383009.1_g000001 Rmu_sc0008218.1_g000004 Rmu_ssc0000157.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260870
rosa_rugosa	Rorug07G0019300
rosa_samantha	Rh7AG147000 Rh7BG147800 Rh7CG151100 Rh7DG148200
rosa_wichuraiana	Rw7G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	6 cut(s)	35, 70, 79, 82, 1708, 1746
AclWI	GGATC	3 cut(s)	357, 846, 912
AcsI	RAATTY	2 cut(s)	964, 1018
AcuI	CTGAAG	3 cut(s)	850, 1028, 1136
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	3 cut(s)	546, 712, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	1356
AjnI	CCWGG	2 cut(s)	540, 1161
Alw21I	GWGCWC	3 cut(s)	96, 1281, 1698
Alw26I	GTCTC	4 cut(s)	45, 283, 428, 1163
AlwI	GGATC	3 cut(s)	357, 846, 912
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	167
ApeKI	GCWGC	4 cut(s)	76, 285, 602, 1730
ApoI	RAATTY	2 cut(s)	964, 1018
Asp700I	GAANNNNTTC	1 cut(s)	1641
AspA2I	CCTAGG	1 cut(s)	623
AspS9I	GGNCC	3 cut(s)	19, 651, 1459
AsuHPI	GGTGA	1 cut(s)	1508
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	3 cut(s)	19, 651, 1459
AvrII	CCTAGG	1 cut(s)	623
AxyI	CCTNAGG	1 cut(s)	1463
BaeI	ACNNNNGTAYC	2 cut(s)	545, 578
BanII	GRGCYC	2 cut(s)	1422, 1698
BarI	GAAGNNNNNNTAC	2 cut(s)	1026, 1058
Bbv12I	GWGCWC	3 cut(s)	96, 1281, 1698
BbvI	GCAGC	4 cut(s)	88, 272, 589, 1742
BccI	CCATC	3 cut(s)	340, 1391, 1450
BceAI	ACGGC	1 cut(s)	273
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	2 cut(s)	542, 1163
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	45, 283, 428, 1163
BfaI	CTAG	3 cut(s)	624, 644, 860
BfmI	CTRYAG	2 cut(s)	318, 1005
BisI	GCNGC	7 cut(s)	36, 77, 80, 286, 603, 1731, 1747
BlnI	CCTAGG	1 cut(s)	623
BlpI	GCTNAGC	1 cut(s)	304
BlsI	GCNGC	7 cut(s)	37, 78, 81, 287, 604, 1732, 1748
Bme1390I	CCNGG	2 cut(s)	542, 1163
Bme18I	GGWCC	3 cut(s)	19, 651, 1459
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	19, 651, 1459
BmrFI	CCNGG	2 cut(s)	542, 1163
BmsI	GCATC	5 cut(s)	350, 367, 400, 1095, 1480
BoxI	GACNNNNGTC	2 cut(s)	656, 1382
BplI	GAGNNNNNCTC	2 cut(s)	1680, 1712
BpmI	CTGGAG	4 cut(s)	110, 524, 542, 792
Bpu10I	CCTNAGC	5 cut(s)	1130, 1191, 1197, 1203, 1209
Bpu1102I	GCTNAGC	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	1357
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	366, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	18, 559
Bse21I	CCTNAGG	1 cut(s)	1463
BseBI	CCWGG	2 cut(s)	542, 1163
BseDI	CCNNGG	2 cut(s)	366, 623
BseGI	GGATG	5 cut(s)	333, 1107, 1361, 1495, 1499
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	2 cut(s)	18, 559
BseRI	GAGGAG	3 cut(s)	113, 206, 346
BseXI	GCAGC	4 cut(s)	88, 272, 589, 1742
BseYI	CCCAGC	1 cut(s)	1438
BsgI	GTGCAG	2 cut(s)	207, 1569
Bsh1285I	CGRYCG	1 cut(s)	1562
BsiEI	CGRYCG	1 cut(s)	1562
BsiHKAI	GWGCWC	3 cut(s)	96, 1281, 1698
BsiHKCI	CYCGRG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	4 cut(s)	45, 283, 428, 1163
BsmBI	CGTCTC	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	695, 1389
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	4 cut(s)	96, 1281, 1422, 1698
Bsp1407I	TGTACA	1 cut(s)	710
Bsp143I	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
Bsp1720I	GCTNAGC	1 cut(s)	304
BspACI	CCGC	6 cut(s)	35, 70, 79, 82, 1708, 1746
BspHI	TCATGA	1 cut(s)	1393
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	3 cut(s)	357, 846, 912
BspQI	GCTCTTC	2 cut(s)	612, 1686
BsrGI	TGTACA	1 cut(s)	710
BsrI	ACTGG	2 cut(s)	18, 559
BssECI	CCNNGG	2 cut(s)	366, 623
BssMI	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	366, 623
Bst2UI	CCWGG	2 cut(s)	542, 1163
Bst4CI	ACNGT	5 cut(s)	185, 710, 919, 1174, 1573
Bst6I	CTCTTC	5 cut(s)	158, 475, 612, 783, 1686
BstACI	GRCGYC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	710
BstBAI	YACGTR	1 cut(s)	1357
BstC8I	GCNNGC	2 cut(s)	111, 382
BstF5I	GGATG	5 cut(s)	333, 1107, 1361, 1495, 1499
BstKTI	GATC	9 cut(s)	202, 352, 523, 841, 907, 1543, 1562, 1601, 1669
BstMAI	GTCTC	4 cut(s)	45, 283, 428, 1163
BstMBI	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
BstMCI	CGRYCG	1 cut(s)	1562
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 76, 106, 314
BstNI	CCWGG	2 cut(s)	542, 1163
BstNSI	RCATGY	1 cut(s)	954
BstPAI	GACNNNNGTC	2 cut(s)	656, 1382
BstSCI	CCNGG	2 cut(s)	540, 1161
BstSFI	CTRYAG	2 cut(s)	318, 1005
BstV1I	GCAGC	4 cut(s)	88, 272, 589, 1742
BstX2I	RGATCY	3 cut(s)	349, 838, 904
BstYI	RGATCY	3 cut(s)	349, 838, 904
Bsu36I	CCTNAGG	1 cut(s)	1463
BtsCI	GGATG	5 cut(s)	333, 1107, 1361, 1495, 1499
BtsIMutI	CAGTG	2 cut(s)	190, 516
Cac8I	GCNNGC	2 cut(s)	111, 382
CaiI	CAGNNNCTG	1 cut(s)	1172
CciI	TCATGA	1 cut(s)	1393
Cfr13I	GGNCC	3 cut(s)	19, 651, 1459
CseI	GACGC	4 cut(s)	46, 125, 233, 646
Csp6I	GTAC	3 cut(s)	545, 711, 1034
CviQI	GTAC	3 cut(s)	545, 711, 1034
DpnI	GATC	9 cut(s)	201, 351, 522, 840, 906, 1542, 1561, 1600, 1668
DpnII	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	5 cut(s)	158, 475, 612, 783, 1686
EarI	CTCTTC	5 cut(s)	158, 475, 612, 783, 1686
EciI	GGCGGA	2 cut(s)	85, 97
Ecl136II	GAGCTC	1 cut(s)	1696
Eco130I	CCWWGG	2 cut(s)	366, 623
Eco24I	GRGCYC	2 cut(s)	1422, 1698
Eco47I	GGWCC	3 cut(s)	19, 651, 1459
Eco53kI	GAGCTC	1 cut(s)	1696
Eco57I	CTGAAG	3 cut(s)	850, 1028, 1136
Eco81I	CCTNAGG	1 cut(s)	1463
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	1696
EcoRII	CCWGG	2 cut(s)	540, 1161
EcoT14I	CCWWGG	2 cut(s)	366, 623
EcoT38I	GRGCYC	2 cut(s)	1422, 1698
ErhI	CCWWGG	2 cut(s)	366, 623
Esp3I	CGTCTC	1 cut(s)	428
FalI	AAGNNNNNCTT	4 cut(s)	1588, 1620, 1683, 1715
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	7 cut(s)	36, 77, 80, 286, 603, 1731, 1747
FokI	GGATG	5 cut(s)	340, 1114, 1348, 1486, 1502
FriOI	GRGCYC	2 cut(s)	1422, 1698
Fsp4HI	GCNGC	7 cut(s)	36, 77, 80, 286, 603, 1731, 1747
FspBI	CTAG	3 cut(s)	624, 644, 860
GluI	GCNGC	7 cut(s)	36, 77, 80, 286, 603, 1731, 1747
GsaI	CCCAGC	1 cut(s)	1442
GsuI	CTGGAG	4 cut(s)	110, 524, 542, 792
HgaI	GACGC	4 cut(s)	46, 125, 233, 646
Hin1I	GRCGYC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	2 cut(s)	758, 1291
HinfI	GANTC	3 cut(s)	85, 932, 979
HpaI	GTTAAC	1 cut(s)	681
HphI	GGTGA	1 cut(s)	1508
Hpy166II	GTNNAC	7 cut(s)	19, 223, 293, 681, 852, 1034, 1549
Hpy188I	TCNGA	8 cut(s)	204, 266, 433, 592, 978, 1116, 1407, 1774
Hpy8I	GTNNAC	7 cut(s)	19, 223, 293, 681, 852, 1034, 1549
Hpy99I	CGWCG	4 cut(s)	62, 119, 132, 147
HpyAV	CCTTC	8 cut(s)	111, 158, 168, 722, 1111, 1119, 1513, 1599
HpyCH4III	ACNGT	5 cut(s)	185, 710, 919, 1174, 1573
HpyCH4IV	ACGT	2 cut(s)	219, 1356
HpyCH4V	TGCA	8 cut(s)	188, 239, 950, 1007, 1389, 1586, 1730, 1761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 76, 106, 314
HpySE526I	ACGT	2 cut(s)	219, 1356
Hsp92I	GRCGYC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	681
Kzo9I	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
LguI	GCTCTTC	2 cut(s)	612, 1686
LmnI	GCTCC	6 cut(s)	91, 248, 368, 751, 773, 1701
Lsp1109I	GCAGC	4 cut(s)	88, 272, 589, 1742
LweI	GCATC	5 cut(s)	350, 367, 400, 1095, 1480
MaeI	CTAG	3 cut(s)	624, 644, 860
MaeII	ACGT	2 cut(s)	219, 1356
MaeIII	GTNAC	6 cut(s)	403, 514, 581, 658, 704, 1081
MalI	GATC	9 cut(s)	201, 351, 522, 840, 906, 1542, 1561, 1600, 1668
MboI	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
MflI	RGATCY	3 cut(s)	349, 838, 904
MhlI	GDGCHC	4 cut(s)	96, 1281, 1422, 1698
MluCI	AATT	5 cut(s)	673, 855, 964, 1018, 1423
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	3 cut(s)	937, 994, 1632
MroXI	GAANNNNTTC	1 cut(s)	1641
MspA1I	CMGCKG	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	542, 1163
Mva1269I	GAATGC	2 cut(s)	695, 1389
MvaI	CCWGG	2 cut(s)	542, 1163
MwoI	GCNNNNNNNGC	4 cut(s)	54, 76, 106, 314
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
NmuCI	GTSAC	2 cut(s)	514, 658
NspI	RCATGY	1 cut(s)	954
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	1393
PciSI	GCTCTTC	2 cut(s)	612, 1686
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 262
PctI	GAATGC	2 cut(s)	695, 1389
PdmI	GAANNNNTTC	1 cut(s)	1641
PfeI	GAWTC	2 cut(s)	932, 979
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	7 cut(s)	37, 78, 81, 287, 604, 1732, 1748
Ple19I	CGATCG	1 cut(s)	1562
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	1357
PshAI	GACNNNNGTC	2 cut(s)	656, 1382
Psp124BI	GAGCTC	1 cut(s)	1698
Psp6I	CCWGG	2 cut(s)	540, 1161
PspFI	CCCAGC	1 cut(s)	1438
PspGI	CCWGG	2 cut(s)	540, 1161
PspPI	GGNCC	3 cut(s)	19, 651, 1459
PspXI	VCTCGAGB	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	3 cut(s)	349, 838, 904
PsyI	GACNNNGTC	1 cut(s)	56
PvuI	CGATCG	1 cut(s)	1562
RsaI	GTAC	3 cut(s)	546, 712, 1035
RsaNI	GTAC	3 cut(s)	545, 711, 1034
SacI	GAGCTC	1 cut(s)	1698
SapI	GCTCTTC	2 cut(s)	612, 1686
SatI	GCNGC	7 cut(s)	36, 77, 80, 286, 603, 1731, 1747
Sau3AI	GATC	9 cut(s)	199, 349, 520, 838, 904, 1540, 1559, 1598, 1666
Sau96I	GGNCC	3 cut(s)	19, 651, 1459
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	542, 1163
SduI	GDGCHC	4 cut(s)	96, 1281, 1422, 1698
SfaNI	GCATC	5 cut(s)	350, 367, 400, 1095, 1480
SfcI	CTRYAG	2 cut(s)	318, 1005
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	3 cut(s)	19, 651, 1459
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	5 cut(s)	673, 855, 964, 1018, 1423
SsiI	CCGC	6 cut(s)	35, 70, 79, 82, 1708, 1746
SspMI	CTAG	3 cut(s)	624, 644, 860
SstI	GAGCTC	1 cut(s)	1698
StyD4I	CCNGG	2 cut(s)	540, 1161
StyI	CCWWGG	2 cut(s)	366, 623
TaaI	ACNGT	5 cut(s)	185, 710, 919, 1174, 1573
TaiI	ACGT	2 cut(s)	222, 1359
TaqI	TCGA	5 cut(s)	60, 168, 356, 495, 1562
TasI	AATT	5 cut(s)	673, 855, 964, 1018, 1423
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	3 cut(s)	38, 82, 1749
TfiI	GAWTC	2 cut(s)	932, 979
TscAI	CASTG	2 cut(s)	190, 523
TseFI	GTSAC	2 cut(s)	514, 658
TseI	GCWGC	4 cut(s)	76, 285, 602, 1730
Tsp45I	GTSAC	2 cut(s)	514, 658
TspDTI	ATGAA	5 cut(s)	387, 602, 1382, 1416, 1650
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	190, 523
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	19, 651, 1459
XapI	RAATTY	2 cut(s)	964, 1018
XbaI	TCTAGA	1 cut(s)	859
XceI	RCATGY	1 cut(s)	954
XhoI	CTCGAG	1 cut(s)	167
XmaJI	CCTAGG	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	1641
XspI	CTAG	3 cut(s)	624, 644, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.