Rh7AG147000

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010274
Physical Location & Seq
Reverse (-)
11921043 .. 11925737
4695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG147000.1

Sequence Viewer

Length: 1272 bp
ATGGAGACCCAACTGGTGGACCTCTGCTTAAAAGCGGCGTGTGAAAGCAGAGACAGCGTCGAGAAATGGCGGAGGCAGCGGCGGAGTCTGGAGCACTTGCCTTCTCAGCTCGCCGACGCTCTCCTCCGTCGCCTCATCTCTCGTCGCCTTCTCTTCCCTTCGTTGCTCGAGGTGTTCAAACACAGTGCAGAGGAGATTGATCTGAGAGGCGACAACAACGTTGACGCCGAATGGTTTGCATACATTGGAGCATTTCGTCACCTCCGAAGTTTAAATGTCTCTGGCTGCCGTAAACTCACAAGCTCAGCTCTTTGGGCTGTAGCAGGGATGGGGAGTTTAAGGGAGATGGATCTTTCGAGATGCTCCAAGGTTAATGATGCTGGCATTAGGCATCTTTCATCTGTTACAACTTTGGAAAAGTTATGGATTTCGGAGACGGGGGTGTCTGCTAAAGGGGTTATGCTTCTCTCTTCGCTTGGAAACTTGTCTGTTCTCGACTTGGGTGGTTTGCCTGTCACTGATCAAGCACTCAGTTCTCTCCAGGTACTTACTAAACTCCAGTACCTTGACCTTTGGGGGAGTAACATATCTGACAAGGGTGCTGCTCTTCTTCATATGTTCCCTAGGTTGAGTTTCCTCAATCTAGCTTGGACCAGCGTCACAAAGTTGCCAAATTGGTTAACCCTTGAATGCTTAAACATGAGTAACTGTACAATAAATCTACTTGAAGGAGATAATGGTAAAGCTCCTTTAGTCAAGCTAATTGTTTCTGGAGCTACATTTGGAGAAGAGGTTGCTGATTTCCATTATATAGAAACAACCCTTTTAACCTTTTTGGATCTTTCCAAGTCTACAATTCTAGACTTCAGCTTCTTATCTCATCTAAATGCTCTGGAACACTTGGATCTCAGCTCTACTGTGATAGGAGATGATTCGCTTCAACTTATTGCATGTATTGGAGTGAATTTGAAATATCTGAATCTTAACAACACCAAAGTAAGCTCTGCAGGAGTTGGAAATTTGACAGGGCATGTACCTAATCTTCAGGTTTTGTCTATATCACATACATCAGTAGATGATGTTACCATATCTTACATTGGCATGATGCCTTCTCTGAAGGTTATTGACCTGAGCAATACCAACATTAAAGGTACAGATTTTCAAATACAAATCCTACATCACAGGGTTTTTCGTTTACATAGCGATAAAAAAGAGGGAGGCTTGAATAATCTGACAGTAAATGGGCTGCACTTATTCAGTCTTCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6 LRR_8

Protein Analysis

423

Amino Acids

46.66

Weight (kDa)

6.43

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 82 - 241 1.5e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 851
AciI CCGC 4 cut(s) 35, 70, 79, 82
AclI AACGTT 1 cut(s) 219
AclWI GGATC 3 cut(s) 357, 846, 912
AcsI RAATTY 2 cut(s) 964, 1018
AcuI CTGAAG 3 cut(s) 850, 1028, 1136
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 5 cut(s) 546, 563, 712, 1035, 1153
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 7 cut(s) 178, 689, 728, 941, 970, 1163, 1225
AjnI CCWGG 1 cut(s) 540
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 45, 283, 428
AlwI GGATC 3 cut(s) 357, 846, 912
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 76, 285, 602, 1246
ApoI RAATTY 2 cut(s) 964, 1018
AspA2I CCTAGG 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 19, 651
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 19, 651
AvrII CCTAGG 1 cut(s) 623
BaeI ACNNNNGTAYC 2 cut(s) 545, 578
BarI GAAGNNNNNNTAC 2 cut(s) 1026, 1058
BbsI GAAGAC 1 cut(s) 1253
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 4 cut(s) 88, 272, 589, 1233
BccI CCATC 2 cut(s) 322, 340
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 542
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 45, 283, 428
BfaI CTAG 3 cut(s) 624, 644, 860
BfmI CTRYAG 2 cut(s) 318, 1005
BisI GCNGC 6 cut(s) 36, 77, 80, 286, 603, 1247
BlnI CCTAGG 1 cut(s) 623
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 6 cut(s) 37, 78, 81, 287, 604, 1248
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 2 cut(s) 19, 651
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 19, 651
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 4 cut(s) 350, 367, 400, 1095
BoxI GACNNNNGTC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 1253
BpmI CTGGAG 4 cut(s) 110, 524, 542, 792
Bpu10I CCTNAGC 1 cut(s) 1130
Bpu1102I GCTNAGC 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 366, 623
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 18, 559
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 366, 623
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 6 cut(s) 119, 194, 318, 544, 922, 1121
BseNI ACTGG 2 cut(s) 18, 559
BseRI GAGGAG 2 cut(s) 113, 206
BseXI GCAGC 4 cut(s) 88, 272, 589, 1233
BsgI GTGCAG 2 cut(s) 207, 1232
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 3 cut(s) 45, 283, 428
BsmBI CGTCTC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 695
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 710
Bsp143I GATC 5 cut(s) 199, 349, 520, 838, 904
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 4 cut(s) 35, 70, 79, 82
BspCNI CTCAG 6 cut(s) 118, 195, 317, 543, 921, 1122
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 3 cut(s) 357, 846, 912
BspQI GCTCTTC 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 710
BsrI ACTGG 2 cut(s) 18, 559
BssECI CCNNGG 2 cut(s) 366, 623
BssMI GATC 5 cut(s) 199, 349, 520, 838, 904
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 366, 623
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 4 cut(s) 185, 710, 919, 1237
Bst6I CTCTTC 4 cut(s) 158, 475, 612, 783
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 710
BstC8I GCNNGC 2 cut(s) 111, 382
BstDEI CTNAG 6 cut(s) 105, 203, 304, 530, 908, 1130
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 5 cut(s) 202, 352, 523, 841, 907
BstMAI GTCTC 3 cut(s) 45, 283, 428
BstMBI GATC 5 cut(s) 199, 349, 520, 838, 904
BstMWI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
BstNI CCWGG 1 cut(s) 542
BstNSI RCATGY 2 cut(s) 954, 1034
BstPAI GACNNNNGTC 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 2 cut(s) 318, 1005
BstV1I GCAGC 4 cut(s) 88, 272, 589, 1233
BstV2I GAAGAC 1 cut(s) 1253
BstX2I RGATCY 3 cut(s) 349, 838, 904
BstYI RGATCY 3 cut(s) 349, 838, 904
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 190, 516
Cac8I GCNNGC 2 cut(s) 111, 382
Cfr13I GGNCC 2 cut(s) 19, 651
CseI GACGC 4 cut(s) 46, 125, 233, 646
Csp6I GTAC 5 cut(s) 545, 562, 711, 1034, 1152
CviAII CATG 4 cut(s) 700, 951, 1031, 1102
CviQI GTAC 5 cut(s) 545, 562, 711, 1034, 1152
DdeI CTNAG 6 cut(s) 105, 203, 304, 530, 908, 1130
DpnI GATC 5 cut(s) 201, 351, 522, 840, 906
DpnII GATC 5 cut(s) 199, 349, 520, 838, 904
DraI TTTAAA 1 cut(s) 273
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 4 cut(s) 158, 475, 612, 783
EarI CTCTTC 4 cut(s) 158, 475, 612, 783
EciI GGCGGA 2 cut(s) 85, 97
Eco130I CCWWGG 2 cut(s) 366, 623
Eco47I GGWCC 2 cut(s) 19, 651
Eco57I CTGAAG 3 cut(s) 850, 1028, 1136
Eco88I CYCGRG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 366, 623
ErhI CCWWGG 2 cut(s) 366, 623
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 4 cut(s) 703, 954, 1034, 1105
FatI CATG 4 cut(s) 699, 950, 1030, 1101
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 6 cut(s) 36, 77, 80, 286, 603, 1247
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 6 cut(s) 36, 77, 80, 286, 603, 1247
FspBI CTAG 3 cut(s) 624, 644, 860
GluI GCNGC 6 cut(s) 36, 77, 80, 286, 603, 1247
GsuI CTGGAG 4 cut(s) 110, 524, 542, 792
HgaI GACGC 4 cut(s) 46, 125, 233, 646
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 4 cut(s) 703, 954, 1034, 1105
HincII GTYRAC 2 cut(s) 223, 681
HindII GTYRAC 2 cut(s) 223, 681
HinfI GANTC 3 cut(s) 85, 932, 979
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 6 cut(s) 19, 223, 293, 681, 852, 1196
Hpy188I TCNGA 7 cut(s) 204, 266, 433, 592, 978, 1116, 1233
Hpy188III TCNNGA 7 cut(s) 61, 89, 357, 494, 771, 860, 893
Hpy8I GTNNAC 6 cut(s) 19, 223, 293, 681, 852, 1196
Hpy99I CGWCG 4 cut(s) 62, 119, 132, 147
HpyAV CCTTC 6 cut(s) 111, 158, 168, 722, 1111, 1119
HpyCH4III ACNGT 4 cut(s) 185, 710, 919, 1237
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 5 cut(s) 188, 239, 950, 1007, 1249
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
HpyF3I CTNAG 6 cut(s) 105, 203, 304, 530, 908, 1130
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 4 cut(s) 703, 954, 1034, 1105
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 5 cut(s) 199, 349, 520, 838, 904
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 5 cut(s) 91, 248, 368, 751, 773
Lsp1109I GCAGC 4 cut(s) 88, 272, 589, 1233
LweI GCATC 4 cut(s) 350, 367, 400, 1095
MaeI CTAG 3 cut(s) 624, 644, 860
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 7 cut(s) 257, 403, 514, 581, 658, 704, 1081
MalI GATC 5 cut(s) 201, 351, 522, 840, 906
MboI GATC 5 cut(s) 199, 349, 520, 838, 904
MboII GAAGA 7 cut(s) 145, 462, 599, 602, 800, 1034, 1253
MflI RGATCY 3 cut(s) 349, 838, 904
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 673, 762, 855, 964, 1018
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 994
MseI TTAA 9 cut(s) 29, 272, 338, 372, 680, 695, 827, 984, 1146
MslI CAYNNNNRTG 2 cut(s) 885, 1100
MspA1I CMGCKG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
NdeI CATATG 1 cut(s) 615
NdeII GATC 5 cut(s) 199, 349, 520, 838, 904
NlaIII CATG 4 cut(s) 703, 954, 1034, 1105
NmuCI GTSAC 3 cut(s) 257, 514, 658
NspI RCATGY 2 cut(s) 954, 1034
PaeR7I CTCGAG 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 262
PctI GAATGC 1 cut(s) 695
PfeI GAWTC 2 cut(s) 932, 979
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 6 cut(s) 37, 78, 81, 287, 604, 1248
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PshAI GACNNNNGTC 1 cut(s) 656
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspPI GGNCC 2 cut(s) 19, 651
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 1009
PsuI RGATCY 3 cut(s) 349, 838, 904
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 5 cut(s) 546, 563, 712, 1035, 1153
RsaNI GTAC 5 cut(s) 545, 562, 711, 1034, 1152
RseI CAYNNNNRTG 2 cut(s) 885, 1100
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 9 cut(s) 29, 272, 338, 372, 680, 695, 827, 984, 1146
SatI GCNGC 6 cut(s) 36, 77, 80, 286, 603, 1247
Sau3AI GATC 5 cut(s) 199, 349, 520, 838, 904
Sau96I GGNCC 2 cut(s) 19, 651
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 4 cut(s) 350, 367, 400, 1095
SfcI CTRYAG 2 cut(s) 318, 1005
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 19, 651
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 885, 1100
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 5 cut(s) 673, 762, 855, 964, 1018
SsiI CCGC 4 cut(s) 35, 70, 79, 82
SspMI CTAG 3 cut(s) 624, 644, 860
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 366, 623
TaaI ACNGT 4 cut(s) 185, 710, 919, 1237
TaiI ACGT 1 cut(s) 222
TaqI TCGA 4 cut(s) 60, 168, 356, 495
TasI AATT 5 cut(s) 673, 762, 855, 964, 1018
TatI WGTACW 1 cut(s) 710
TauI GCSGC 2 cut(s) 38, 82
TfiI GAWTC 2 cut(s) 932, 979
Tru1I TTAA 9 cut(s) 29, 272, 338, 372, 680, 695, 827, 984, 1146
Tru9I TTAA 9 cut(s) 29, 272, 338, 372, 680, 695, 827, 984, 1146
TscAI CASTG 2 cut(s) 190, 523
TseFI GTSAC 3 cut(s) 257, 514, 658
TseI GCWGC 4 cut(s) 76, 285, 602, 1246
Tsp45I GTSAC 3 cut(s) 257, 514, 658
TspDTI ATGAA 2 cut(s) 387, 602
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 190, 523
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 19, 651
XapI RAATTY 2 cut(s) 964, 1018
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 2 cut(s) 954, 1034
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 851
XspI CTAG 3 cut(s) 624, 644, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.