Rw7G012550

Leucine-rich repeats, outliers

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
11895826 .. 11899428
3603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012550.1

Sequence Viewer

Length: 1869 bp
ATGGAGACCCAACTGGTGGACCTCTGCTTAAAAGCGGCATGTGAAAGCAGAGACAGCGTCGAGAAATGGCGGAGGCAGCGGCGGAGTCTGGAGCACTTGCCTTCTCAGCTCGCCGACGCTCTCCTCCGTCGCCTCATCTCTCGTCGCCTTCTCTTCCCTTCGTTGCTCGAGGTGTTCAAACACAGTGCAGAGGAGATTGATCTGAGAGGCGACAACAACGTTGACGCCGAATGGTTTGCATACATTGGAGCATTTCGTCATCTCCGAAGTTTGAATGTCTCTGGCTGTCGTAAACTCACAAGCTCAGCTCTCTGGGCTGTAGCAGGGATGAGGACTTTAAGGGAGATGGATCTTTCGAGATGCTCCAAGGTTAATGATGCTGGCATTAGGCATCTTTCATCTGTTACAACTTTGGAAAAGTTATGGATTTCGGAGACGGGGGTGTCTGCTAAAGGGGTTATGCTTCTCTCTTCGCTTGGAAACTTGTCTGTTCTCGACTTGGGTGGTTTGCCTGTCACTGATCAAGCACTCAGTTCTCTCCAGGTACTTACTAAACTCCAGTATCTTGACCTTTGGGGGAGTAACATATCTGACAAGGGTGCTGCTCTTCTTCATATGTTCCCTAGGTTGAGTTTCCTCAATCTAGCTTGGACCAGCGTCACAAAGTTGCCAAATTGGTTAACCCTTGAATGCTTAAACATGAGTAACTGTACAATAAATCTACTTCAAGGAGATAATGGTAAAGCTCCTTTAGTCAAGCTTATTGTTTCTGGAGCTACATTTGGAGAAGAGGTTGCTGATTTCCATTATATAGAAACAACCCTTTTAACCTTTTTGGATCTTTCCAAGTCTACAATTCTAGACTTCAGCTTCTTATCTCATCTAAATGCTCTGGAACACTTGGATCTCAGCTCTACTGTGATAGGAGATGATTCGCTTCAACTTATTGCATGTATTGGAGTGAATTTGAAATATCTGAATCTTAACAACACCAAAGTAAGCTCTGCAGGAGTTGGAAATTTAACAGGGCATGTACCTAATCTTCAGGTTTTGTCTATATCACATACATCAGTAGATGATGTTACCATATCTTATATTGGCATGATGCCTTCTCTGAAGGTTATTGACCTGAGCAATACCAACATTAAAGAGCCTGAGCATGAGCCTGAGTCAGTTTCAGTCCTCTCAATGTCAACACTTCAAAGTCTCAGGCATTTGGAAAGGTTGAATTTGGCAGATACCCAAGTTATGGATGCAGCTCTATACCCTTTGACAAGCTTCCCAAAGTTAAGCCATTTATCTCTTAAAAGTGCTTCTCTTACAGACATCTCCCTTAACTACGTGTCATCCATATCAAAGCTGACAAATGTCTGCATTCATGATGGTGTTCTGACAAACTCTGGGCTCAATTCATTCAAACCCCCAGCAACTCTTAGAATGATGGACCTGAGGGGTTGTTGGCTCTTAACTGAGGATGCTATCACATCCTTCTCTAAAACTCACCCCCAGATTGAAGTATGGCATGATCTTGTTCACATCTCACGATCGAACCAGACTGTTTCTGATACTGCACCTTCTTCAAGATCAAATTTGAGGACTTCACAAGTGAAGAAGAAGCATGAAAGTATTCCCATGTTGGAATGTTTTTTAGATCAAAGATTGAAGTATAGCAGAGAAGAGCTCCTTTCCATGCGGTTCTCGTCTGTTTCCCTTGCAGCTTCTATTGATAGCGGCATTGGAATATGCAACACACAATCGGCACACCCAGAAGCTACCCTACACTACCTTCGAGAAAATAAAAATGCAGTCTTTGTGGGTAACCCTGGTGACATTCCTCAAACCAATCTAGCCCAAGAGAACCAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

622

Amino Acids

68.69

Weight (kDa)

6.29

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 82 - 241 3.8e-08 Leucine-rich repeat region
LRR_14 PF23598 290 - 487 2.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 16, 1249
AccI GTMKAC 1 cut(s) 851
AciI CCGC 6 cut(s) 35, 70, 79, 82, 1693, 1731
AclI AACGTT 1 cut(s) 219
AclWI GGATC 3 cut(s) 357, 846, 912
AcsI RAATTY 4 cut(s) 964, 1018, 1228, 1588
AcuI CTGAAG 3 cut(s) 850, 1028, 1136
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 546, 712, 1035
AfiI CCNNNNNNNGG 2 cut(s) 16, 1249
AflIII ACRYGT 1 cut(s) 1341
AjnI CCWGG 2 cut(s) 540, 1822
Alw21I GWGCWC 2 cut(s) 96, 1683
Alw26I GTCTC 4 cut(s) 45, 283, 428, 1211
AlwI GGATC 3 cut(s) 357, 846, 912
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 76, 602, 1256, 1715
ApoI RAATTY 4 cut(s) 964, 1018, 1228, 1588
Asp700I GAANNNNTTC 1 cut(s) 1626
AspA2I CCTAGG 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 19, 651, 1444
AsuHPI GGTGA 2 cut(s) 1493, 1838
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 3 cut(s) 19, 651, 1444
AvrII CCTAGG 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 1448
BaeI ACNNNNGTAYC 4 cut(s) 545, 578, 1230, 1263
BanII GRGCYC 2 cut(s) 1407, 1683
BarI GAAGNNNNNNTAC 4 cut(s) 1026, 1058, 1761, 1793
Bbv12I GWGCWC 2 cut(s) 96, 1683
BbvI GCAGC 4 cut(s) 88, 589, 1268, 1727
BccI CCATC 3 cut(s) 340, 1376, 1435
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 542, 1824
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 4 cut(s) 45, 283, 428, 1211
BfaI CTAG 5 cut(s) 624, 644, 860, 1847, 1867
BfmI CTRYAG 2 cut(s) 318, 1005
BisI GCNGC 7 cut(s) 36, 77, 80, 603, 1257, 1716, 1732
BlnI CCTAGG 1 cut(s) 623
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 7 cut(s) 37, 78, 81, 604, 1258, 1717, 1733
Bme1390I CCNGG 2 cut(s) 542, 1824
Bme18I GGWCC 3 cut(s) 19, 651, 1444
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 19, 651, 1444
BmrFI CCNGG 2 cut(s) 542, 1824
BmsI GCATC 6 cut(s) 350, 367, 400, 1095, 1243, 1465
BoxI GACNNNNGTC 2 cut(s) 656, 1367
BplI GAGNNNNNCTC 2 cut(s) 1665, 1697
BpmI CTGGAG 4 cut(s) 110, 524, 542, 792
Bpu10I CCTNAGC 2 cut(s) 1130, 1155
Bpu1102I GCTNAGC 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 1342
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 366, 623, 1822
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 1249
Bse1I ACTGG 2 cut(s) 18, 559
Bse21I CCTNAGG 1 cut(s) 1448
BseBI CCWGG 2 cut(s) 542, 1824
BseDI CCNNGG 3 cut(s) 366, 623, 1822
BseGI GGATG 5 cut(s) 333, 1258, 1346, 1480, 1484
BseLI CCNNNNNNNGG 2 cut(s) 16, 1249
BseNI ACTGG 2 cut(s) 18, 559
BseRI GAGGAG 2 cut(s) 113, 206
BseXI GCAGC 4 cut(s) 88, 589, 1268, 1727
BseYI CCCAGC 1 cut(s) 1423
BsgI GTGCAG 2 cut(s) 207, 1554
Bsh1285I CGRYCG 1 cut(s) 1547
BsiEI CGRYCG 1 cut(s) 1547
BsiHKAI GWGCWC 2 cut(s) 96, 1683
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 16, 1249
BsmAI GTCTC 4 cut(s) 45, 283, 428, 1211
BsmBI CGTCTC 1 cut(s) 428
BsmI GAATGC 2 cut(s) 695, 1374
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 96, 1407, 1683
Bsp1407I TGTACA 1 cut(s) 710
Bsp143I GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 6 cut(s) 35, 70, 79, 82, 1693, 1731
BspHI TCATGA 1 cut(s) 1378
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 3 cut(s) 357, 846, 912
BspQI GCTCTTC 2 cut(s) 612, 1671
BsrGI TGTACA 1 cut(s) 710
BsrI ACTGG 2 cut(s) 18, 559
BssECI CCNNGG 3 cut(s) 366, 623, 1822
BssMI GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 366, 623
Bst2UI CCWGG 2 cut(s) 542, 1824
Bst4CI ACNGT 4 cut(s) 185, 710, 919, 1558
Bst6I CTCTTC 5 cut(s) 158, 475, 612, 783, 1671
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1342
BstC8I GCNNGC 2 cut(s) 111, 382
BstEII GGTNACC 1 cut(s) 1817
BstF5I GGATG 5 cut(s) 333, 1258, 1346, 1480, 1484
BstKTI GATC 9 cut(s) 202, 352, 523, 841, 907, 1528, 1547, 1586, 1654
BstMAI GTCTC 4 cut(s) 45, 283, 428, 1211
BstMBI GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
BstMCI CGRYCG 1 cut(s) 1547
BstMWI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
BstNI CCWGG 2 cut(s) 542, 1824
BstNSI RCATGY 3 cut(s) 42, 954, 1034
BstPAI GACNNNNGTC 2 cut(s) 656, 1367
BstPI GGTNACC 1 cut(s) 1817
BstSCI CCNGG 2 cut(s) 540, 1822
BstSFI CTRYAG 2 cut(s) 318, 1005
BstV1I GCAGC 4 cut(s) 88, 589, 1268, 1727
BstX2I RGATCY 3 cut(s) 349, 838, 904
BstYI RGATCY 3 cut(s) 349, 838, 904
Bsu36I CCTNAGG 1 cut(s) 1448
BtsCI GGATG 5 cut(s) 333, 1258, 1346, 1480, 1484
BtsIMutI CAGTG 2 cut(s) 190, 516
Cac8I GCNNGC 2 cut(s) 111, 382
CciI TCATGA 1 cut(s) 1378
Cfr13I GGNCC 3 cut(s) 19, 651, 1444
CseI GACGC 4 cut(s) 46, 125, 233, 646
Csp6I GTAC 3 cut(s) 545, 711, 1034
CviQI GTAC 3 cut(s) 545, 711, 1034
DpnI GATC 9 cut(s) 201, 351, 522, 840, 906, 1527, 1546, 1585, 1653
DpnII GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 5 cut(s) 158, 475, 612, 783, 1671
EarI CTCTTC 5 cut(s) 158, 475, 612, 783, 1671
EciI GGCGGA 2 cut(s) 85, 97
Ecl136II GAGCTC 1 cut(s) 1681
Eco130I CCWWGG 2 cut(s) 366, 623
Eco24I GRGCYC 2 cut(s) 1407, 1683
Eco47I GGWCC 3 cut(s) 19, 651, 1444
Eco53kI GAGCTC 1 cut(s) 1681
Eco57I CTGAAG 3 cut(s) 850, 1028, 1136
Eco81I CCTNAGG 1 cut(s) 1448
Eco88I CYCGRG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 1817
EcoICRI GAGCTC 1 cut(s) 1681
EcoO65I GGTNACC 1 cut(s) 1817
EcoRII CCWGG 2 cut(s) 540, 1822
EcoT14I CCWWGG 2 cut(s) 366, 623
EcoT38I GRGCYC 2 cut(s) 1407, 1683
ErhI CCWWGG 2 cut(s) 366, 623
Esp3I CGTCTC 1 cut(s) 428
FalI AAGNNNNNCTT 2 cut(s) 1668, 1700
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 7 cut(s) 36, 77, 80, 603, 1257, 1716, 1732
FokI GGATG 5 cut(s) 340, 1265, 1333, 1471, 1487
FriOI GRGCYC 2 cut(s) 1407, 1683
Fsp4HI GCNGC 7 cut(s) 36, 77, 80, 603, 1257, 1716, 1732
FspBI CTAG 5 cut(s) 624, 644, 860, 1847, 1867
GluI GCNGC 7 cut(s) 36, 77, 80, 603, 1257, 1716, 1732
GsaI CCCAGC 1 cut(s) 1427
GsuI CTGGAG 4 cut(s) 110, 524, 542, 792
HgaI GACGC 4 cut(s) 46, 125, 233, 646
Hin1I GRCGYC 1 cut(s) 225
HincII GTYRAC 3 cut(s) 223, 681, 1194
HindII GTYRAC 3 cut(s) 223, 681, 1194
HindIII AAGCTT 2 cut(s) 758, 1276
HinfI GANTC 4 cut(s) 85, 932, 979, 1169
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 2 cut(s) 1493, 1838
Hpy166II GTNNAC 7 cut(s) 19, 223, 293, 681, 852, 1194, 1534
Hpy188I TCNGA 8 cut(s) 204, 266, 433, 592, 978, 1116, 1392, 1564
Hpy8I GTNNAC 7 cut(s) 19, 223, 293, 681, 852, 1194, 1534
Hpy99I CGWCG 4 cut(s) 62, 119, 132, 147
HpyAV CCTTC 8 cut(s) 111, 158, 168, 1111, 1119, 1498, 1584, 1796
HpyCH4III ACNGT 4 cut(s) 185, 710, 919, 1558
HpyCH4IV ACGT 2 cut(s) 219, 1341
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
HpySE526I ACGT 2 cut(s) 219, 1341
Hsp92I GRCGYC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
LguI GCTCTTC 2 cut(s) 612, 1671
LmnI GCTCC 6 cut(s) 91, 248, 368, 751, 773, 1686
Lsp1109I GCAGC 4 cut(s) 88, 589, 1268, 1727
LweI GCATC 6 cut(s) 350, 367, 400, 1095, 1243, 1465
MaeI CTAG 5 cut(s) 624, 644, 860, 1847, 1867
MaeII ACGT 2 cut(s) 219, 1341
MaeIII GTNAC 8 cut(s) 403, 514, 581, 658, 704, 1081, 1817, 1826
MalI GATC 9 cut(s) 201, 351, 522, 840, 906, 1527, 1546, 1585, 1653
MboI GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
MflI RGATCY 3 cut(s) 349, 838, 904
MhlI GDGCHC 3 cut(s) 96, 1407, 1683
MluCI AATT 7 cut(s) 673, 855, 964, 1018, 1228, 1408, 1588
MlyI GAGTC 2 cut(s) 94, 1178
MmeI TCCRAC 2 cut(s) 994, 1617
MroXI GAANNNNTTC 1 cut(s) 1626
MslI CAYNNNNRTG 2 cut(s) 885, 1383
MspA1I CMGCKG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 542, 1824
Mva1269I GAATGC 2 cut(s) 695, 1374
MvaI CCWGG 2 cut(s) 542, 1824
MwoI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
NdeI CATATG 1 cut(s) 615
NdeII GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
NmuCI GTSAC 3 cut(s) 514, 658, 1826
NspI RCATGY 3 cut(s) 42, 954, 1034
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 1378
PciSI GCTCTTC 2 cut(s) 612, 1671
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 262
PctI GAATGC 2 cut(s) 695, 1374
PdmI GAANNNNTTC 1 cut(s) 1626
PfeI GAWTC 2 cut(s) 932, 979
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 2 cut(s) 16, 1249
PkrI GCNGC 7 cut(s) 37, 78, 81, 604, 1258, 1717, 1733
Ple19I CGATCG 1 cut(s) 1547
PleI GAGTC 2 cut(s) 93, 1177
PpsI GAGTC 2 cut(s) 93, 1177
Ppu21I YACGTR 1 cut(s) 1342
PshAI GACNNNNGTC 2 cut(s) 656, 1367
Psp124BI GAGCTC 1 cut(s) 1683
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 540, 1822
PspEI GGTNACC 1 cut(s) 1817
PspFI CCCAGC 1 cut(s) 1423
PspGI CCWGG 2 cut(s) 540, 1822
PspPI GGNCC 3 cut(s) 19, 651, 1444
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 1009
PsuI RGATCY 3 cut(s) 349, 838, 904
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 1547
RsaI GTAC 3 cut(s) 546, 712, 1035
RsaNI GTAC 3 cut(s) 545, 711, 1034
RseI CAYNNNNRTG 2 cut(s) 885, 1383
SacI GAGCTC 1 cut(s) 1683
SapI GCTCTTC 2 cut(s) 612, 1671
SatI GCNGC 7 cut(s) 36, 77, 80, 603, 1257, 1716, 1732
Sau3AI GATC 9 cut(s) 199, 349, 520, 838, 904, 1525, 1544, 1583, 1651
Sau96I GGNCC 3 cut(s) 19, 651, 1444
SchI GAGTC 2 cut(s) 94, 1178
ScrFI CCNGG 2 cut(s) 542, 1824
SduI GDGCHC 3 cut(s) 96, 1407, 1683
SfaNI GCATC 6 cut(s) 350, 367, 400, 1095, 1243, 1465
SfcI CTRYAG 2 cut(s) 318, 1005
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 3 cut(s) 19, 651, 1444
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 885, 1383
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 7 cut(s) 673, 855, 964, 1018, 1228, 1408, 1588
SsiI CCGC 6 cut(s) 35, 70, 79, 82, 1693, 1731
SspMI CTAG 5 cut(s) 624, 644, 860, 1847, 1867
SstI GAGCTC 1 cut(s) 1683
StyD4I CCNGG 2 cut(s) 540, 1822
StyI CCWWGG 2 cut(s) 366, 623
TaaI ACNGT 4 cut(s) 185, 710, 919, 1558
TaiI ACGT 2 cut(s) 222, 1344
TaqI TCGA 6 cut(s) 60, 168, 356, 495, 1547, 1789
TasI AATT 7 cut(s) 673, 855, 964, 1018, 1228, 1408, 1588
TatI WGTACW 1 cut(s) 710
TauI GCSGC 3 cut(s) 38, 82, 1734
TfiI GAWTC 2 cut(s) 932, 979
TscAI CASTG 2 cut(s) 190, 523
TseFI GTSAC 3 cut(s) 514, 658, 1826
TseI GCWGC 4 cut(s) 76, 602, 1256, 1715
Tsp45I GTSAC 3 cut(s) 514, 658, 1826
TspDTI ATGAA 5 cut(s) 387, 602, 1367, 1401, 1635
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 190, 523
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 2 cut(s) 16, 1249
VpaK11BI GGWCC 3 cut(s) 19, 651, 1444
XapI RAATTY 4 cut(s) 964, 1018, 1228, 1588
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 3 cut(s) 42, 954, 1034
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 1626
XspI CTAG 5 cut(s) 624, 644, 860, 1847, 1867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.