Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Reverse (-)

27152740 .. 27153966

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGTGGAGAAGAACATCAATGCACCAGTTGTAGACTGCTGCATTGGAATTCCTCTTTATTTCACTGATCTTCAAAGGAGAAGTGTTATGGACGCGGCCACAATTGCCGGCTTGAAGCCCCTGTGCTTGTTTCATGAAACTAAAGCGTCTGCTTTAGAGTTTGGTGTTTACAAGAAGGATTTACCAGAAAGTAAACACAGCCAACTCAATGTTGCTTTTGTGGATATTGGACATGCTACCTTTAAGAAGGGCGTGATGAAAATACTAGTTCATTCATTTGATCAGTGTTTGGGTGTACTATTCCGGCATTTCTCTGTGAAATTTCAGGACGATTACCAGATCAATGTTTTTCAGAACACCAGGGCCTGCCATCAGCTTCAAACTGCATGTGAGAAGCTGAAGAAGGTGCTGAGTAATAAATCTGAGGCATCTGTGAATATCCAGTGCTTAATTGGCGATAAAGATGTTAGCGGTTTCATTAAGGAGGAGTTTGAACAAATTTGTGTTCCTATTTTGGAACGACTGATGAGACCTTTGAAGAAAGACCTTGCTGAAGATGGCGAGTTTACAGTAGAAGATGTTGACATGGTTGAGGTTGTGCTCTCATGTTCCTGCTATAATCAAGATGTTGAAACATTTTTTGGGGCTACGCGAGCTTTGAATGCGAGTGAGAACATTGCGAGGCTTTGTGCCCTGCAATGTGCAATTTTTTGTCCGATATTCAAAGTCCAAAAGTATCAGGTCTATGATTTCTTGCCATTTTCAGTTACAATTTCTTGGATACATTATTCTTGTAATCCCCAAAGTACTTTCCTTTTGCCAAAGGGAAATCCTATTCCAAGTCTCAAGCCTCTTGCATATAATGGAGCAGATACATTCTCAGTTGATGTGCAGACTCTGCAGTATGACGATCTTGGTGAAGTGCAGGCAGCACCCGCAAAAAGTACGTATTCAATTGGCCCTTTGAAGTCTACATCAGGTGAACGGGTGAAAATGAAGGTGAAAGTTCGCATGAATTTGAATGATATTGTGTCTATAGAGTCGGCAACTGTTTTGGAAAAGAAAGAAGTTCATGGGGTTCTAGAGGTAACAGAAGTTCGTGTGCCTGTGGCCGAATTAGTTTATGGAGGAATGACTGAAGCAGAAGTGCATAAGGCAAGGACGAAGGAATTTGAGATGGGCTTCACAAGATCGATTAACGGAGACCTGAGCATCATGGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

408

Amino Acids

45.6

Weight (kDa)

5.91

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 360	1.4e-48	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	33, 971
AccII	CGCG	2 cut(s)	95, 652
AciI	CCGC	3 cut(s)	95, 471, 936
AcoI	YGGCCR	2 cut(s)	96, 1110
AcsI	RAATTY	5 cut(s)	48, 320, 498, 1015, 1169
AcuI	CTGAAG	3 cut(s)	419, 573, 1158
AfaI	GTAC	3 cut(s)	297, 808, 946
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	3 cut(s)	376, 397, 656
AluI	AGCT	3 cut(s)	376, 397, 656
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	3 cut(s)	523, 848, 1197
AlwNI	CAGNNNCTG	2 cut(s)	366, 898
AoxI	GGCC	4 cut(s)	96, 363, 958, 1110
ApeKI	GCWGC	2 cut(s)	39, 929
ApoI	RAATTY	5 cut(s)	48, 320, 498, 1015, 1169
AspS9I	GGNCC	2 cut(s)	363, 959
AsuHPI	GGTGA	4 cut(s)	929, 992, 1000, 1012
BaeGI	GKGCMC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	26, 941
BccI	CCATC	3 cut(s)	378, 551, 1171
BciT130I	CCWGG	1 cut(s)	361
BciVI	GTATCC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	523, 848, 1197
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	266, 1082
BfmI	CTRYAG	2 cut(s)	899, 1035
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	40, 96, 930
BlsI	GCNGC	3 cut(s)	41, 97, 931
BmcAI	AGTACT	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	363, 959
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	437, 1221
Bpu10I	CCTNAGC	1 cut(s)	1208
BpuEI	CTTGAG	1 cut(s)	830
Bsa29I	ATCGAT	1 cut(s)	1193
BsaAI	YACGTR	1 cut(s)	948
BsaI	GGTCTC	2 cut(s)	523, 1197
BsaJI	CCNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	26, 442
Bse3DI	GCAATG	2 cut(s)	675, 704
BseBI	CCWGG	1 cut(s)	361
BseCI	ATCGAT	1 cut(s)	1193
BseDI	CCNNGG	1 cut(s)	360
BseMI	GCAATG	2 cut(s)	675, 704
BseMII	CTCAG	4 cut(s)	401, 414, 894, 1199
BseNI	ACTGG	2 cut(s)	26, 442
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	26, 941
BsgI	GTGCAG	2 cut(s)	911, 944
Bsh1236I	CGCG	2 cut(s)	95, 652
BshFI	GGCC	4 cut(s)	98, 365, 960, 1112
BshVI	ATCGAT	1 cut(s)	1193
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	108, 304
BsmAI	GTCTC	3 cut(s)	523, 848, 1197
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	4 cut(s)	98, 365, 960, 1112
Bso31I	GGTCTC	2 cut(s)	523, 1197
Bsp1286I	GDGCHC	2 cut(s)	603, 694
Bsp143I	GATC	5 cut(s)	67, 280, 339, 910, 1190
BspACI	CCGC	3 cut(s)	95, 471, 936
BspANI	GGCC	4 cut(s)	98, 365, 960, 1112
BspCNI	CTCAG	4 cut(s)	402, 415, 893, 1200
BspDI	ATCGAT	1 cut(s)	1193
BspFNI	CGCG	2 cut(s)	95, 652
BspHI	TCATGA	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	903
BspTNI	GGTCTC	2 cut(s)	523, 1197
BsrDI	GCAATG	2 cut(s)	675, 704
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	26, 442
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	5 cut(s)	67, 280, 339, 910, 1190
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	571, 1051
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstBAI	YACGTR	1 cut(s)	948
BstC8I	GCNNGC	4 cut(s)	109, 367, 654, 927
BstDEI	CTNAG	4 cut(s)	410, 423, 880, 1208
BstFNI	CGCG	2 cut(s)	95, 652
BstKTI	GATC	5 cut(s)	70, 283, 342, 913, 1193
BstMAI	GTCTC	3 cut(s)	523, 848, 1197
BstMBI	GATC	5 cut(s)	67, 280, 339, 910, 1190
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 453, 653, 662, 898, 935
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	2 cut(s)	236, 390
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	2 cut(s)	899, 1035
BstSLI	GKGCMC	1 cut(s)	694
BstSNI	TACGTA	1 cut(s)	948
BstUI	CGCG	2 cut(s)	95, 652
BstV1I	GCAGC	2 cut(s)	26, 941
Bsu15I	ATCGAT	1 cut(s)	1193
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	4 cut(s)	98, 365, 960, 1112
BsuTUI	ATCGAT	1 cut(s)	1193
BtsIMutI	CAGTG	3 cut(s)	63, 290, 449
Cac8I	GCNNGC	4 cut(s)	109, 367, 654, 927
CaiI	CAGNNNCTG	2 cut(s)	366, 898
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	363, 959
ClaI	ATCGAT	1 cut(s)	1193
CseI	GACGC	2 cut(s)	101, 135
Csp6I	GTAC	3 cut(s)	296, 807, 945
CviAII	CATG	8 cut(s)	134, 233, 387, 586, 606, 1012, 1073, 1216
CviQI	GTAC	3 cut(s)	296, 807, 945
DdeI	CTNAG	4 cut(s)	410, 423, 880, 1208
DpnI	GATC	5 cut(s)	69, 282, 341, 912, 1192
DpnII	GATC	5 cut(s)	67, 280, 339, 910, 1190
EaeI	YGGCCR	2 cut(s)	96, 1110
Eco105I	TACGTA	1 cut(s)	948
Eco31I	GGTCTC	2 cut(s)	523, 1197
Eco57I	CTGAAG	3 cut(s)	419, 573, 1158
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	359
FaeI	CATG	8 cut(s)	137, 236, 390, 589, 609, 1015, 1076, 1219
FatI	CATG	8 cut(s)	133, 232, 386, 585, 605, 1011, 1072, 1215
FauI	CCCGC	1 cut(s)	943
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	2 cut(s)	33, 971
Fnu4HI	GCNGC	3 cut(s)	40, 96, 930
Fsp4HI	GCNGC	3 cut(s)	40, 96, 930
FspBI	CTAG	2 cut(s)	266, 1082
GluI	GCNGC	3 cut(s)	40, 96, 930
HaeIII	GGCC	4 cut(s)	98, 365, 960, 1112
HapII	CCGG	2 cut(s)	108, 304
HgaI	GACGC	2 cut(s)	101, 135
Hin1II	CATG	8 cut(s)	137, 236, 390, 589, 609, 1015, 1076, 1219
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	895, 1040
HpaII	CCGG	2 cut(s)	108, 304
HphI	GGTGA	4 cut(s)	929, 992, 1000, 1012
Hpy166II	GTNNAC	8 cut(s)	34, 169, 194, 296, 567, 583, 972, 983
Hpy188I	TCNGA	3 cut(s)	354, 424, 717
Hpy188III	TCNNGA	4 cut(s)	134, 326, 623, 1082
Hpy8I	GTNNAC	8 cut(s)	34, 169, 194, 296, 567, 583, 972, 983
HpyAV	CCTTC	5 cut(s)	169, 241, 397, 991, 1159
HpyCH4III	ACNGT	2 cut(s)	571, 1051
HpyCH4IV	ACGT	1 cut(s)	947
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 453, 653, 662, 898, 935
HpyF3I	CTNAG	4 cut(s)	410, 423, 880, 1208
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	8 cut(s)	137, 236, 390, 589, 609, 1015, 1076, 1219
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	67, 280, 339, 910, 1190
LmnI	GCTCC	1 cut(s)	866
Lsp1109I	GCAGC	2 cut(s)	26, 941
LweI	GCATC	2 cut(s)	437, 1221
MaeI	CTAG	2 cut(s)	266, 1082
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	2 cut(s)	766, 1087
MalI	GATC	5 cut(s)	69, 282, 341, 912, 1192
MboI	GATC	5 cut(s)	67, 280, 339, 910, 1190
MboII	GAAGA	6 cut(s)	22, 62, 412, 550, 566, 587
MfeI	CAATTG	2 cut(s)	102, 954
MhlI	GDGCHC	2 cut(s)	603, 694
MlyI	GAGTC	2 cut(s)	889, 1049
MnlI	CCTC	8 cut(s)	63, 418, 478, 586, 675, 861, 1078, 1121
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	5 cut(s)	243, 449, 480, 1197, 1225
MspI	CCGG	2 cut(s)	108, 304
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	2 cut(s)	102, 954
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	95, 652
MwoI	GCNNNNNNNGC	6 cut(s)	104, 453, 653, 662, 898, 935
NaeI	GCCGGC	1 cut(s)	109
NdeII	GATC	5 cut(s)	67, 280, 339, 910, 1190
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	8 cut(s)	137, 236, 390, 589, 609, 1015, 1076, 1219
NspI	RCATGY	2 cut(s)	236, 390
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	667
PdiI	GCCGGC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	41, 97, 931
PleI	GAGTC	2 cut(s)	889, 1048
PpsI	GAGTC	2 cut(s)	889, 1048
Ppu21I	YACGTR	1 cut(s)	948
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	363, 959
PsrI	GAACNNNNNNTAC	2 cut(s)	1080, 1112
PstI	CTGCAG	1 cut(s)	903
PstNI	CAGNNNCTG	2 cut(s)	366, 898
RsaI	GTAC	3 cut(s)	297, 808, 946
RsaNI	GTAC	3 cut(s)	296, 807, 945
SaqAI	TTAA	5 cut(s)	243, 449, 480, 1197, 1225
SatI	GCNGC	3 cut(s)	40, 96, 930
Sau3AI	GATC	5 cut(s)	67, 280, 339, 910, 1190
Sau96I	GGNCC	2 cut(s)	363, 959
ScaI	AGTACT	1 cut(s)	808
SchI	GAGTC	2 cut(s)	889, 1049
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	603, 694
SfaNI	GCATC	2 cut(s)	437, 1221
SfcI	CTRYAG	2 cut(s)	899, 1035
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SnaBI	TACGTA	1 cut(s)	948
SpeI	ACTAGT	1 cut(s)	265
SsiI	CCGC	3 cut(s)	95, 471, 936
SspMI	CTAG	2 cut(s)	266, 1082
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	571, 1051
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	1 cut(s)	1193
TatI	WGTACW	2 cut(s)	295, 806
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	5 cut(s)	243, 449, 480, 1197, 1225
Tru9I	TTAA	5 cut(s)	243, 449, 480, 1197, 1225
TscAI	CASTG	3 cut(s)	70, 290, 449
TseI	GCWGC	2 cut(s)	39, 929
TspDTI	ATGAA	9 cut(s)	122, 150, 260, 264, 272, 466, 1010, 1028, 1061
TspGWI	ACGGA	1 cut(s)	1215
TspRI	CASTG	3 cut(s)	70, 290, 449
XapI	RAATTY	5 cut(s)	48, 320, 498, 1015, 1169
XbaI	TCTAGA	1 cut(s)	1081
XceI	RCATGY	2 cut(s)	236, 390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmiI	GTMKAC	2 cut(s)	33, 971
XspI	CTAG	2 cut(s)	266, 1082
ZrmI	AGTACT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.