Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002616.1

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Reverse (-)

34622 .. 35137

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002616.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggtggagaagaacatcaatgcaccagttgtagactgctgcattggaattcctctttatttcattgatcttcaaaggagaagtgttatggacgcggccacagttgccggcttgaagcccctgtgcttgtttcatgaaactaaagcgtctgctttagagtttggtatttacaaggatttaccagaaagtaaacacagccaactcaatgttgcttttgtggatattggacatgctacctttaagaagggcttgatgaaaatactagttcattcatttgatcagtgtttgggtgtactattccggcatttctctgtgaaatttcaggacgattaccagatcaatgtttttcagaacaccagggcctgccatcagcttcaaactgcatgtgagaagctgaagaaggtgcttagtaataaatctgaggcatctgtgaacatccagtgcttaattggcgataaagatgttagcggtttcattaaggtgaacaaatttgtgttcctattttggaacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

171

Amino Acids

19.35

Weight (kDa)

8.45

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	95, 468
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	48, 317, 488
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	74, 115, 377
AhlI	ACTAGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	373, 394
AluI	AGCT	2 cut(s)	373, 394
AlwNI	CAGNNNCTG	1 cut(s)	363
AoxI	GGCC	2 cut(s)	96, 360
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	3 cut(s)	48, 317, 488
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	358
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	40, 96
BlsI	GCNGC	2 cut(s)	41, 97
Bme1390I	CCNGG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	26, 439
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	26, 439
BseXI	GCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	98, 362
BsiSI	CCGG	2 cut(s)	108, 301
BsnI	GGCC	2 cut(s)	98, 362
Bsp143I	GATC	3 cut(s)	67, 277, 336
BspACI	CCGC	2 cut(s)	95, 468
BspANI	GGCC	2 cut(s)	98, 362
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	26, 439
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	67, 277, 336
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	109, 364
BstDEI	CTNAG	2 cut(s)	407, 420
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	3 cut(s)	70, 280, 339
BstMBI	GATC	3 cut(s)	67, 277, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 450
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	2 cut(s)	233, 387
BstSCI	CCNGG	1 cut(s)	356
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	98, 362
BtsCI	GGATG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	287, 446
Cac8I	GCNNGC	2 cut(s)	109, 364
CaiI	CAGNNNCTG	1 cut(s)	363
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	360
CseI	GACGC	2 cut(s)	101, 135
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	134, 230, 384
CviJI	RGCY	8 cut(s)	98, 111, 118, 198, 249, 362, 373, 394
CviKI_1	RGCY	8 cut(s)	98, 111, 118, 198, 249, 362, 373, 394
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	407, 420
DpnI	GATC	3 cut(s)	69, 279, 338
DpnII	GATC	3 cut(s)	67, 277, 336
EaeI	YGGCCR	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	3 cut(s)	137, 233, 387
FaiI	YATR	4 cut(s)	89, 135, 231, 385
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	3 cut(s)	133, 229, 383
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	40, 96
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	40, 96
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	2 cut(s)	40, 96
HaeIII	GGCC	2 cut(s)	98, 362
HapII	CCGG	2 cut(s)	108, 301
HgaI	GACGC	2 cut(s)	101, 135
Hin1II	CATG	3 cut(s)	137, 233, 387
HpaII	CCGG	2 cut(s)	108, 301
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	5 cut(s)	34, 191, 293, 433, 484
Hpy188I	TCNGA	2 cut(s)	351, 421
Hpy188III	TCNNGA	2 cut(s)	134, 323
Hpy8I	GTNNAC	5 cut(s)	34, 191, 293, 433, 484
HpyAV	CCTTC	2 cut(s)	238, 394
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	3 cut(s)	23, 42, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 450
HpyF3I	CTNAG	2 cut(s)	407, 420
Hsp92II	CATG	3 cut(s)	137, 233, 387
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	67, 277, 336
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	263
MalI	GATC	3 cut(s)	69, 279, 338
MboI	GATC	3 cut(s)	67, 277, 336
MboII	GAAGA	3 cut(s)	22, 62, 409
MluCI	AATT	4 cut(s)	48, 317, 447, 488
MnlI	CCTC	2 cut(s)	63, 415
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	3 cut(s)	240, 446, 477
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	2 cut(s)	108, 301
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	104, 450
NaeI	GCCGGC	1 cut(s)	109
NdeII	GATC	3 cut(s)	67, 277, 336
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	137, 233, 387
NspI	RCATGY	2 cut(s)	233, 387
PagI	TCATGA	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	41, 97
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	240, 446, 477
SatI	GCNGC	2 cut(s)	40, 96
Sau3AI	GATC	3 cut(s)	67, 277, 336
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	5 cut(s)	239, 375, 396, 405, 483
SfaNI	GCATC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	479
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	4 cut(s)	48, 317, 447, 488
SsiI	CCGC	2 cut(s)	95, 468
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	103
TasI	AATT	4 cut(s)	48, 317, 447, 488
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	240, 446, 477
Tru9I	TTAA	3 cut(s)	240, 446, 477
TscAI	CASTG	2 cut(s)	287, 446
TseI	GCWGC	1 cut(s)	39
TspDTI	ATGAA	7 cut(s)	52, 122, 150, 257, 261, 269, 463
TspRI	CASTG	2 cut(s)	287, 446
XapI	RAATTY	3 cut(s)	48, 317, 488
XceI	RCATGY	2 cut(s)	233, 387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.