Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Reverse (-)

26625709 .. 26628420

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGACATTGTGGAGAAGAACATCAATGCACCAGTTGTAGACTGCTGCATTGGAATTCCTCTTTATTTCACTGATCTTCAAAGGAGAAGTGTCGTGGACGCGGCCATAATTGCCGGCTTGAAGCCCCTGTGTTTGTTTCATGAAACTAAAGCGTCTGCTTTAGAGTTTGGTGTTTACAAGAAGGATTTACCAGAAAGTAAACACAGCCAACTCAATGTTGCTTTTGTGGATATTGGACATGCTACCTTTAAGAAGGGCGTGATGAAAATACTAGTTCATTCATCTGATCAGTGTTTGGGTGTACTATTCCGGCATTTCTCTGTGAAATTTCAGGACGATTACCAGATCAATGTTTTTCAGAACACCAGGGCCTGCCATCAGCTTCAAACTGCATGTGAGAAGCTGAAGAAGGTGCTTAGTAATAAATCTGAGGCATCTGTGAATATCCAGTGCTTAATTGGCGATAAAGATGTTAGCGGTTTCATTAAGGAGGAGTTTGAACAAATTTGTGTTCCTATTTTGGAACGACTGATGAGACCTTTGAAGAAAGACCTTGCTGAAAATGACGAGTTTACAGTAGAAGATGTTGACATGGTTGAGGGAAATCCTATTCCAAGTCTCAAGCCTCTTGCATATAATGGAGCAGATACATTCTCAGTTGATGTGCAGACTCTGCAGTATGAAGTGCAGGCAGCACCCGCAAAAAGTACGTATTCAATTGGCCCCTTGAAGTCTACATCAGGTGAACGGGTGAAAATGAAGGTGAAAGTTCGCATGAATTTGAATGATATTGTGTCTATAGAGTCGGCAACTGTTTTGGAAAAGAAAGAAGTTCATGGGGTTCTAGAGGTAACAGAAGTTCGTGTGCCTGTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

292

Amino Acids

32.54

Weight (kDa)

6.02

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	3 - 199	9.4e-37	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	39, 734
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	101, 477, 699
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	4 cut(s)	54, 326, 504, 778
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	303, 709
AgsI	TTSAA	8 cut(s)	80, 121, 386, 500, 544, 717, 730, 784
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	382, 403
AluI	AGCT	2 cut(s)	382, 403
Alw26I	GTCTC	2 cut(s)	529, 623
AlwNI	CAGNNNCTG	2 cut(s)	372, 673
AoxI	GGCC	3 cut(s)	102, 369, 721
ApeKI	GCWGC	2 cut(s)	45, 692
ApoI	RAATTY	4 cut(s)	54, 326, 504, 778
AspS9I	GGNCC	2 cut(s)	369, 722
AsuHPI	GGTGA	3 cut(s)	755, 763, 775
BbvI	GCAGC	2 cut(s)	32, 704
BccI	CCATC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	529, 623
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	272, 845
BfmI	CTRYAG	2 cut(s)	674, 798
BisI	GCNGC	3 cut(s)	46, 102, 693
BlsI	GCNGC	3 cut(s)	47, 103, 694
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	369, 722
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	32, 448
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	420, 669
BseNI	ACTGG	2 cut(s)	32, 448
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	32, 704
BsgI	GTGCAG	2 cut(s)	686, 707
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	104, 371, 723
BsiSI	CCGG	2 cut(s)	114, 310
BsmAI	GTCTC	2 cut(s)	529, 623
BsnI	GGCC	3 cut(s)	104, 371, 723
Bso31I	GGTCTC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	73, 286, 345
BspACI	CCGC	3 cut(s)	101, 477, 699
BspANI	GGCC	3 cut(s)	104, 371, 723
BspCNI	CTCAG	2 cut(s)	421, 668
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	724
BspMAI	CTGCAG	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	32, 448
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	73, 286, 345
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	577, 814
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstBAI	YACGTR	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	115, 373, 690
BstDEI	CTNAG	3 cut(s)	416, 429, 655
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	76, 289, 348
BstMAI	GTCTC	2 cut(s)	529, 623
BstMBI	GATC	3 cut(s)	73, 286, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 459, 673, 698
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	2 cut(s)	242, 396
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	2 cut(s)	674, 798
BstSNI	TACGTA	1 cut(s)	711
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	32, 704
BsuRI	GGCC	3 cut(s)	104, 371, 723
BtsIMutI	CAGTG	3 cut(s)	69, 296, 455
Cac8I	GCNNGC	3 cut(s)	115, 373, 690
CaiI	CAGNNNCTG	2 cut(s)	372, 673
CciI	TCATGA	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	369, 722
CseI	GACGC	2 cut(s)	107, 141
Csp6I	GTAC	2 cut(s)	302, 708
CviAII	CATG	6 cut(s)	140, 239, 393, 592, 775, 836
CviJI	RGCY	9 cut(s)	104, 117, 124, 207, 371, 382, 403, 625, 723
CviKI_1	RGCY	9 cut(s)	104, 117, 124, 207, 371, 382, 403, 625, 723
CviQI	GTAC	2 cut(s)	302, 708
DdeI	CTNAG	3 cut(s)	416, 429, 655
DpnI	GATC	3 cut(s)	75, 288, 347
DpnII	GATC	3 cut(s)	73, 286, 345
EaeI	YGGCCR	1 cut(s)	102
Eco105I	TACGTA	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	365
FaeI	CATG	6 cut(s)	143, 242, 396, 595, 778, 839
FatI	CATG	6 cut(s)	139, 238, 392, 591, 774, 835
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	2 cut(s)	39, 734
Fnu4HI	GCNGC	3 cut(s)	46, 102, 693
Fsp4HI	GCNGC	3 cut(s)	46, 102, 693
FspBI	CTAG	2 cut(s)	272, 845
GluI	GCNGC	3 cut(s)	46, 102, 693
HaeIII	GGCC	3 cut(s)	104, 371, 723
HapII	CCGG	2 cut(s)	114, 310
HgaI	GACGC	2 cut(s)	107, 141
Hin1II	CATG	6 cut(s)	143, 242, 396, 595, 778, 839
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	2 cut(s)	670, 803
HpaII	CCGG	2 cut(s)	114, 310
HphI	GGTGA	3 cut(s)	755, 763, 775
Hpy166II	GTNNAC	9 cut(s)	40, 97, 175, 200, 302, 573, 589, 735, 746
Hpy188I	TCNGA	3 cut(s)	286, 360, 430
Hpy188III	TCNNGA	3 cut(s)	140, 332, 845
Hpy8I	GTNNAC	9 cut(s)	40, 97, 175, 200, 302, 573, 589, 735, 746
HpyAV	CCTTC	4 cut(s)	175, 247, 403, 754
HpyCH4III	ACNGT	2 cut(s)	577, 814
HpyCH4IV	ACGT	1 cut(s)	710
HpyCH4V	TGCA	7 cut(s)	29, 48, 392, 632, 667, 676, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 459, 673, 698
HpyF3I	CTNAG	3 cut(s)	416, 429, 655
HpySE526I	ACGT	1 cut(s)	710
Hsp92II	CATG	6 cut(s)	143, 242, 396, 595, 778, 839
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	73, 286, 345
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	2 cut(s)	32, 704
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	2 cut(s)	272, 845
MaeII	ACGT	1 cut(s)	710
MaeIII	GTNAC	2 cut(s)	850, 871
MalI	GATC	3 cut(s)	75, 288, 347
MboI	GATC	3 cut(s)	73, 286, 345
MboII	GAAGA	5 cut(s)	28, 68, 418, 556, 593
MfeI	CAATTG	1 cut(s)	717
MluCI	AATT	7 cut(s)	54, 108, 326, 456, 504, 717, 778
MlyI	GAGTC	2 cut(s)	664, 812
MnlI	CCTC	6 cut(s)	69, 424, 484, 592, 636, 841
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	3 cut(s)	249, 455, 486
MspI	CCGG	2 cut(s)	114, 310
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	110, 459, 673, 698
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	3 cut(s)	73, 286, 345
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	6 cut(s)	143, 242, 396, 595, 778, 839
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	871
NspI	RCATGY	2 cut(s)	242, 396
PagI	TCATGA	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	47, 103, 694
PleI	GAGTC	2 cut(s)	664, 811
PpsI	GAGTC	2 cut(s)	664, 811
Ppu21I	YACGTR	1 cut(s)	711
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	2 cut(s)	369, 722
PsrI	GAACNNNNNNTAC	2 cut(s)	843, 875
PstI	CTGCAG	1 cut(s)	678
PstNI	CAGNNNCTG	2 cut(s)	372, 673
RsaI	GTAC	2 cut(s)	303, 709
RsaNI	GTAC	2 cut(s)	302, 708
SaqAI	TTAA	3 cut(s)	249, 455, 486
SatI	GCNGC	3 cut(s)	46, 102, 693
Sau3AI	GATC	3 cut(s)	73, 286, 345
Sau96I	GGNCC	2 cut(s)	369, 722
SchI	GAGTC	2 cut(s)	664, 812
ScrFI	CCNGG	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	2 cut(s)	674, 798
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SnaBI	TACGTA	1 cut(s)	711
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	7 cut(s)	54, 108, 326, 456, 504, 717, 778
SsiI	CCGC	3 cut(s)	101, 477, 699
SspMI	CTAG	2 cut(s)	272, 845
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	577, 814
TaiI	ACGT	1 cut(s)	713
TasI	AATT	7 cut(s)	54, 108, 326, 456, 504, 717, 778
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	249, 455, 486
Tru9I	TTAA	3 cut(s)	249, 455, 486
TscAI	CASTG	3 cut(s)	76, 296, 455
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	2 cut(s)	45, 692
Tsp45I	GTSAC	1 cut(s)	871
TspRI	CASTG	3 cut(s)	76, 296, 455
XapI	RAATTY	4 cut(s)	54, 326, 504, 778
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	2 cut(s)	242, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	2 cut(s)	39, 734
XspI	CTAG	2 cut(s)	272, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.