Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Forward (+)

44409473 .. 44410111

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGACATGGTTGAGGTTGTGCTCTCATGTTCCTGCTATAATCAAGATGTTGAAACATTTTTTGGGGAAGGAACCTACGCGAGCTTTGAATGCGAGTGAGAGCATAGCCAGGGGTTGTGCCCTGCAATGTGCAATTTTTTGTCCGATATTCAAAGTCCAAAAGTATCAGGGAAATCCTATTCCAAGTCTCAAGCCTCTTGCATATAATGGAGCAGACACATTCTCAGTTGATGTGCAGACTCTGCAGTATGACGATCTTGGTGAAGTGCAGGCAGCACCTGCAAAAAGTACGTATTCAATTGGCCCTTTGAAGTCTACATCAGGTGAACGGGTGAAAATGAAGGTGAAAGTTCGCTTGAATTTGAATGATATTGTGTCTATAGAATCAGCAACTGTTTTGGAAAAGAAAGAAGTTCATGGGGTTCTAGAGGTAACAGAAGTTCGTGTGCCTGTGGCCGAATTAGTTTATGGAGGAATGACTGAAGCAGAAGTGCATAAGGCAAGGAAGGAGGAGTTTGAGATGGCTTCACAAGATCGATTAATGGAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

185

Amino Acids

20.38

Weight (kDa)

7.67

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 55	1e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	317
AccII	CGCG	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	292
AgsI	TTSAA	7 cut(s)	55, 91, 154, 300, 313, 361, 367
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	194, 542
AlwNI	CAGNNNCTG	3 cut(s)	244, 281, 395
AoxI	GGCC	2 cut(s)	304, 456
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	361
AseI	ATTAAT	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	4 cut(s)	275, 338, 346, 358
BaeGI	GKGCMC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	194, 542
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	2 cut(s)	245, 381
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	2 cut(s)	257, 290
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	306, 458
BshVI	ATCGAT	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	194, 542
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	306, 458
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	26, 124
Bsp143I	GATC	2 cut(s)	256, 535
BspANI	GGCC	2 cut(s)	306, 458
BspCNI	CTCAG	1 cut(s)	239
BspDI	ATCGAT	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	256, 535
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	397
BstAPI	GCANNNNNTGC	2 cut(s)	244, 281
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	84, 273
BstDEI	CTNAG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	259, 538
BstMAI	GTCTC	2 cut(s)	194, 542
BstMBI	GATC	2 cut(s)	256, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 244, 281
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	245, 381
BstSLI	GKGCMC	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	294
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	306, 458
BsuTUI	ATCGAT	1 cut(s)	538
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	84, 273
CaiI	CAGNNNCTG	3 cut(s)	244, 281, 395
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	538
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	3 cut(s)	9, 29, 419
CviJI	RGCY	6 cut(s)	86, 110, 196, 306, 458, 527
CviKI_1	RGCY	6 cut(s)	86, 110, 196, 306, 458, 527
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	2 cut(s)	258, 537
DpnII	GATC	2 cut(s)	256, 535
EaeI	YGGCCR	1 cut(s)	456
Eco105I	TACGTA	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	3 cut(s)	12, 32, 422
FatI	CATG	3 cut(s)	8, 28, 418
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	306, 458
Hin1II	CATG	3 cut(s)	12, 32, 422
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	241, 386
HphI	GGTGA	4 cut(s)	275, 338, 346, 358
Hpy166II	GTNNAC	3 cut(s)	6, 318, 329
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	46, 428
Hpy8I	GTNNAC	3 cut(s)	6, 318, 329
HpyAV	CCTTC	3 cut(s)	64, 337, 502
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	8 cut(s)	127, 134, 203, 238, 247, 271, 284, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 244, 281
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	12, 32, 422
Kzo9I	GATC	2 cut(s)	256, 535
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	9 cut(s)	48, 97, 124, 137, 155, 257, 294, 309, 465
Lsp1109I	GCAGC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	2 cut(s)	258, 537
MboI	GATC	2 cut(s)	256, 535
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	26, 124
MluCI	AATT	4 cut(s)	135, 300, 361, 461
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	9, 207, 424, 467, 505
MseI	TTAA	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	92, 244, 281
NdeII	GATC	2 cut(s)	256, 535
NlaIII	CATG	3 cut(s)	12, 32, 422
NlaIV	GGNNCC	1 cut(s)	75
PaqCI	CACCTGC	1 cut(s)	289
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	305
PsrI	GAACNNNNNNTAC	2 cut(s)	426, 458
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	3 cut(s)	244, 281, 395
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	256, 535
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	26, 124
SetI	ASST	9 cut(s)	20, 79, 88, 283, 296, 328, 348, 435, 554
SfcI	CTRYAG	2 cut(s)	245, 381
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SnaBI	TACGTA	1 cut(s)	294
Sse9I	AATT	4 cut(s)	135, 300, 361, 461
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	538
TasI	AATT	4 cut(s)	135, 300, 361, 461
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	356, 407
VspI	ATTAAT	1 cut(s)	542
XapI	RAATTY	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.