Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002616.1

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Reverse (-)

33944 .. 34570

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002616.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgttgacatggttgaggttgtgctctcatgttcctgctataatcaagatgttgaaacattttttggggaaggaacctacgcgagctttgaatgcgagtgagaacattgccaggggttgtgccctgcaatgtgcaattttttgtccgatattcaaagtccaaaagtatcaggtctatgagttcttgccattttcagttacaatttcttggatacattattcttgtaatccccaaagtactttccttttcccaaagggaaatcctattccaagtctcaagcctcttgcatataatggagcagatacattctcagttgatgtgcagactctgcagtatgaagtgcaggcagcacccgcaaaaagtacgtattcaattggccctttgaagtctacatcaggtgaacgggtgaagatgaaggtgaaagttcgcacgaatttgaatgatattgtgtctatagagtcggcaactgttttggaaaagaaggaagttcatggggttctagaggtaacagaagttcgtgtgcctgtggccgaattagtttatggaggaatgactgaagcagaagtgcataaggcaaggacgaaggagtttgagatggcttcacaagatcgattaatggagacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

208

Amino Acids

23.3

Weight (kDa)

8.75

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	238, 364
AgsI	TTSAA	6 cut(s)	55, 91, 154, 372, 385, 439
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	278, 614
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	2 cut(s)	376, 528
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	433
AseI	ATTAAT	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	410, 418, 430
BaeGI	GKGCMC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	278, 614
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	329, 453
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	610
BsaAI	YACGTR	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	105, 134
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	610
BseDI	CCNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	105, 134
BseMII	CTCAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	2 cut(s)	341, 362
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	378, 530
BshVI	ATCGAT	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	278, 614
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	378, 530
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	26, 124
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	2 cut(s)	378, 530
BspCNI	CTCAG	1 cut(s)	323
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	105, 134
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	84, 345
BstDEI	CTNAG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	2 cut(s)	278, 614
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 328, 353
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	329, 453
BstSLI	GKGCMC	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	366
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	359
Bsu15I	ATCGAT	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	378, 530
BsuTUI	ATCGAT	1 cut(s)	610
Cac8I	GCNNGC	2 cut(s)	84, 345
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	237, 363
CviAII	CATG	3 cut(s)	9, 29, 491
CviJI	RGCY	5 cut(s)	86, 280, 378, 530, 599
CviKI_1	RGCY	5 cut(s)	86, 280, 378, 530, 599
CviQI	GTAC	2 cut(s)	237, 363
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	528
Eco105I	TACGTA	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	3 cut(s)	12, 32, 494
FatI	CATG	3 cut(s)	8, 28, 490
FauI	CCCGC	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	378, 530
Hin1II	CATG	3 cut(s)	12, 32, 494
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	325, 458
HphI	GGTGA	3 cut(s)	410, 418, 430
Hpy166II	GTNNAC	3 cut(s)	6, 390, 401
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	46, 500
Hpy8I	GTNNAC	3 cut(s)	6, 390, 401
HpyAV	CCTTC	4 cut(s)	64, 409, 475, 577
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	7 cut(s)	127, 134, 287, 322, 331, 343, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 328, 353
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	12, 32, 494
Kzo9I	GATC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	48, 97, 124, 137, 155, 329, 381, 537
Lsp1109I	GCAGC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	196, 505
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	1 cut(s)	421
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	26, 124
MluCI	AATT	5 cut(s)	135, 201, 372, 433, 533
MlyI	GAGTC	2 cut(s)	319, 467
MnlI	CCTC	4 cut(s)	9, 291, 496, 539
MseI	TTAA	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	92, 328, 353
NdeII	GATC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	12, 32, 494
NlaIV	GGNNCC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	319, 466
PpsI	GAGTC	2 cut(s)	319, 466
Ppu21I	YACGTR	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	377
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	238, 364
RsaNI	GTAC	2 cut(s)	237, 363
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	319, 467
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	26, 124
SetI	ASST	9 cut(s)	20, 79, 88, 174, 368, 400, 420, 507, 626
SfcI	CTRYAG	2 cut(s)	329, 453
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SnaBI	TACGTA	1 cut(s)	366
Sse9I	AATT	5 cut(s)	135, 201, 372, 433, 533
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	610
TasI	AATT	5 cut(s)	135, 201, 372, 433, 533
TatI	WGTACW	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	351, 428, 479
VspI	ATTAAT	1 cut(s)	614
XapI	RAATTY	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.