Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Forward (+)

44408808 .. 44409308

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGCATGGTTGGATTTTATATTGGCAATGAGAGTTGCATTGTAGCCATGGTAAGGGGGAGCAGTATTGATATTGTTCCCAATGATGAGTCTAACCATGGAATTCCTCTTTATTTTACTGATCTTCAAAGGAGAAGTGTTATGGACGTGGCCACAATTGCCGGCTTGAAGCCCCTGTGCTTGTTTCATGAAACTACAGCCTCTGCTTTGGAGTTTGGTGTTTACAAGAAGGATTTACCAGAAAGTAAACACAGCCAACTCAATGATGCTTTTGTGGATATTGGACATGCTAGCTTGCAAGTTTGCATTGCTACCTTTAAGAAGGGCGTGATGAAAATACTAGTTCGTTCATTTGACCAGTGTTTGGGTGGTAGGGATTTTGACGTACTATTCCGGCATTTCTCTGTGAAATTTAAGGACGAGTACCAGATCAATGTTTTTCGGACACCAGGGCCTGCCATCAGCTTCATCTGCATGTGGGAAGCTGAAGAAGGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

5.69

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	35 - 146	1.6e-26	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	102, 410
AfaI	GTAC	2 cut(s)	387, 425
AfiI	CCNNNNNNNGG	2 cut(s)	54, 364
AgsI	TTSAA	2 cut(s)	128, 169
AhlI	ACTAGT	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	3 cut(s)	294, 465, 485
AluI	AGCT	3 cut(s)	294, 465, 485
AlwNI	CAGNNNCTG	2 cut(s)	203, 455
AoxI	GGCC	2 cut(s)	150, 452
ApoI	RAATTY	2 cut(s)	102, 410
AspS9I	GGNCC	1 cut(s)	452
AsuNHI	GCTAGC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	152
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	450
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	2 cut(s)	291, 341
BfmI	CTRYAG	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	48, 97, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 364
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	34, 306
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	48, 97, 449
BseLI	CCNNNNNNNGG	2 cut(s)	54, 364
BseMI	GCAATG	2 cut(s)	34, 306
BseNI	ACTGG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	152, 454
BsiSI	CCGG	2 cut(s)	162, 394
BslI	CCNNNNNNNGG	2 cut(s)	54, 364
BsnI	GGCC	2 cut(s)	152, 454
Bsp143I	GATC	2 cut(s)	121, 429
Bsp19I	CCATGG	2 cut(s)	48, 97
BspANI	GGCC	2 cut(s)	152, 454
BspHI	TCATGA	1 cut(s)	187
BspOI	GCTAGC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	34, 306
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	48, 97, 449
BssMI	GATC	2 cut(s)	121, 429
BssT1I	CCWWGG	2 cut(s)	48, 97
Bst2UI	CCWGG	1 cut(s)	450
BstC8I	GCNNGC	4 cut(s)	163, 292, 296, 456
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	48, 97
BstKTI	GATC	2 cut(s)	124, 432
BstMBI	GATC	2 cut(s)	121, 429
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 471
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	2 cut(s)	290, 478
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	152, 454
BtgI	CCRYGG	2 cut(s)	48, 97
BtrI	CACGTC	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	163, 292, 296, 456
CaiI	CAGNNNCTG	2 cut(s)	203, 455
CciI	TCATGA	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	386, 424
CviAII	CATG	6 cut(s)	7, 49, 98, 188, 287, 475
CviQI	GTAC	2 cut(s)	386, 424
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	123, 431
DpnII	GATC	2 cut(s)	121, 429
EaeI	YGGCCR	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	48, 97
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	48, 97
ErhI	CCWWGG	2 cut(s)	48, 97
FaeI	CATG	6 cut(s)	10, 52, 101, 191, 290, 478
FaiI	YATR	8 cut(s)	8, 21, 50, 99, 143, 189, 288, 476
FatI	CATG	6 cut(s)	6, 48, 97, 187, 286, 474
FspBI	CTAG	2 cut(s)	291, 341
HaeIII	GGCC	2 cut(s)	152, 454
HapII	CCGG	2 cut(s)	162, 394
Hin1II	CATG	6 cut(s)	10, 52, 101, 191, 290, 478
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	162, 394
Hpy166II	GTNNAC	2 cut(s)	223, 248
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	223, 248
HpyAV	CCTTC	3 cut(s)	223, 316, 485
HpyCH4IV	ACGT	2 cut(s)	147, 384
HpyCH4V	TGCA	4 cut(s)	39, 298, 306, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 471
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	2 cut(s)	147, 384
Hsp92II	CATG	6 cut(s)	10, 52, 101, 191, 290, 478
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	121, 429
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	9 cut(s)	175, 188, 252, 371, 407, 435, 440, 462, 468
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	291, 341
MaeII	ACGT	2 cut(s)	147, 384
MalI	GATC	2 cut(s)	123, 431
MboI	GATC	2 cut(s)	121, 429
MboII	GAAGA	2 cut(s)	116, 500
MfeI	CAATTG	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	3 cut(s)	102, 156, 410
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	117, 211
Mox20I	TGGCCA	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	2 cut(s)	318, 414
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	2 cut(s)	162, 394
MspR9I	CCNGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	158, 471
NaeI	GCCGGC	1 cut(s)	163
NcoI	CCATGG	2 cut(s)	48, 97
NdeII	GATC	2 cut(s)	121, 429
NgoMIV	GCCGGC	1 cut(s)	161
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	6 cut(s)	10, 52, 101, 191, 290, 478
NspI	RCATGY	2 cut(s)	290, 478
PagI	TCATGA	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	364
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	2 cut(s)	203, 455
RsaI	GTAC	2 cut(s)	387, 425
RsaNI	GTAC	2 cut(s)	386, 424
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	318, 414
Sau3AI	GATC	2 cut(s)	121, 429
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	7 cut(s)	150, 296, 317, 387, 467, 487, 496
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	340
Sse9I	AATT	3 cut(s)	102, 156, 410
SspMI	CTAG	2 cut(s)	291, 341
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	48, 97
TaiI	ACGT	2 cut(s)	150, 387
TasI	AATT	3 cut(s)	102, 156, 410
Tru1I	TTAA	2 cut(s)	318, 414
Tru9I	TTAA	2 cut(s)	318, 414
TscAI	CASTG	1 cut(s)	365
TspDTI	ATGAA	5 cut(s)	176, 204, 339, 347, 457
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	102, 410
XceI	RCATGY	2 cut(s)	290, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XspI	CTAG	2 cut(s)	291, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.