Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Reverse (-)

24719219 .. 24719857

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG249200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTGACATGGTTGAGGTTGTGCTCTCATGTTCCTGCTATAATCAAGATGTTGAAACATTTTTTGGGGAAGGAACCTACGCGAGCTTTGAATGCGACTGAGAACATTGCCAGGGGTTGTGCCCTGCAATGTGCAATTTTTTGTCCGATATTCGAAGTCCAAAAGTATCAGGTCTATGATTTCTTGCCATTTTCAGTTACAATTTCTTGGATACATTATTCTTGTAATCCCCAAAGTACTTTCCTTTTCCCAAGGGGAAATCCTATTCCAAGTCTCAAGCCTCTTGCATATAATGGAGCAGATACATTCTCAGTTGATGTGCAGACTCTGCAGTATGACGATCTTGGTGAAGTGAAGGCAGCACCCGCAAAAAGTACGTATTCAATTGGCCCTTTGAAGTCTACATCAGGTGAACGGGTGAAAATGAAGGTGAAAGTTCGCATGAATTTGAATGATATTGTGTCTATAGAGTCGGCAACTGTTTTGGAAAAGAAAGAAGTTCATGGGGTTCTAGAGGTAACAGAAGTTCGTGTGCCTGTGGCCGAATTAGTTTATGGAGGAATGACTGAAGCAGAAGTGCATAAGGCAAGGACGAAGGAGTTTGAGATGGCTTCACAAGATCGATTAATGGAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

212

Amino Acids

23.76

Weight (kDa)

7.64

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 175	1.7e-13	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	2 cut(s)	238, 376
AgsI	TTSAA	5 cut(s)	55, 91, 384, 397, 451
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	278, 626
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	2 cut(s)	388, 540
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	445
AseI	ATTAAT	1 cut(s)	626
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	4 cut(s)	359, 422, 430, 442
AsuII	TTCGAA	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	278, 626
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	2 cut(s)	329, 465
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	112
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	111, 251
Bse3DI	GCAATG	2 cut(s)	105, 134
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	111, 251
BseMI	GCAATG	2 cut(s)	105, 134
BseMII	CTCAG	2 cut(s)	90, 324
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	390, 542
BshVI	ATCGAT	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	278, 626
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	390, 542
Bso31I	GGTCTC	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	26, 124
Bsp143I	GATC	2 cut(s)	340, 619
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	2 cut(s)	390, 542
BspCNI	CTCAG	2 cut(s)	91, 323
BspDI	ATCGAT	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	105, 134
BssECI	CCNNGG	2 cut(s)	111, 251
BssMI	GATC	2 cut(s)	340, 619
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	99, 310
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	343, 622
BstMAI	GTCTC	2 cut(s)	278, 626
BstMBI	GATC	2 cut(s)	340, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 328, 365
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	329, 465
BstSLI	GKGCMC	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	378
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	390, 542
BsuTUI	ATCGAT	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	622
Csp6I	GTAC	2 cut(s)	237, 375
CviAII	CATG	4 cut(s)	9, 29, 442, 503
CviJI	RGCY	5 cut(s)	86, 280, 390, 542, 611
CviKI_1	RGCY	5 cut(s)	86, 280, 390, 542, 611
CviQI	GTAC	2 cut(s)	237, 375
DdeI	CTNAG	2 cut(s)	99, 310
DpnI	GATC	2 cut(s)	342, 621
DpnII	GATC	2 cut(s)	340, 619
EaeI	YGGCCR	1 cut(s)	540
Eco105I	TACGTA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	4 cut(s)	12, 32, 445, 506
FatI	CATG	4 cut(s)	8, 28, 441, 502
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	390, 542
Hin1II	CATG	4 cut(s)	12, 32, 445, 506
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	325, 470
HphI	GGTGA	4 cut(s)	359, 422, 430, 442
Hpy166II	GTNNAC	3 cut(s)	6, 402, 413
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	46, 512
Hpy8I	GTNNAC	3 cut(s)	6, 402, 413
HpyAV	CCTTC	4 cut(s)	64, 349, 421, 589
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	127, 134, 287, 322, 331, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 328, 365
HpyF3I	CTNAG	2 cut(s)	99, 310
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	4 cut(s)	12, 32, 445, 506
Kzo9I	GATC	2 cut(s)	340, 619
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	48, 97, 124, 137, 155, 393, 549
Lsp1109I	GCAGC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	196, 517
MalI	GATC	2 cut(s)	342, 621
MboI	GATC	2 cut(s)	340, 619
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	26, 124
MluCI	AATT	5 cut(s)	135, 201, 384, 445, 545
MlyI	GAGTC	2 cut(s)	319, 479
MnlI	CCTC	4 cut(s)	9, 291, 508, 551
MseI	TTAA	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	92, 328, 365
NdeII	GATC	2 cut(s)	340, 619
NlaIII	CATG	4 cut(s)	12, 32, 445, 506
NlaIV	GGNNCC	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	153
PctI	GAATGC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	2 cut(s)	319, 478
PpsI	GAGTC	2 cut(s)	319, 478
Ppu21I	YACGTR	1 cut(s)	378
PshBI	ATTAAT	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	238, 376
RsaNI	GTAC	2 cut(s)	237, 375
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	340, 619
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	319, 479
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	26, 124
SetI	ASST	9 cut(s)	20, 79, 88, 174, 380, 412, 432, 519, 638
SfcI	CTRYAG	2 cut(s)	329, 465
SfuI	TTCGAA	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SnaBI	TACGTA	1 cut(s)	378
Sse9I	AATT	5 cut(s)	135, 201, 384, 445, 545
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	153, 622
TasI	AATT	5 cut(s)	135, 201, 384, 445, 545
TatI	WGTACW	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	440, 458, 491
VspI	ATTAAT	1 cut(s)	626
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	1 cut(s)	512
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.