Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Forward (+)

42694885 .. 42695517

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTGACACGGTTGTGCTCTCATGTTCCTGCTATAATCAAGATGTTGAAACATTTTTTGGGGAAGGAACCTACGCGAGCTTTGAATGCGAGTGAGAACATTGCCAGGGGTTGTGCCCTGCAATGTGCAATTTTTTGTCCGATATTCAAAGTCCAAAAGTATCAGGTCTATAATTTCTTGCCATTTTCAGTTACAATTTCTTGGATACATTATTCTTGTAATCCCCAAAGTACTTTCCTTTTCCCAAAGCGAAATCCTATTACAAGTCTCAAGCCTCTTGCATATAATGGAGCAGATGCATTCTCAGTTGACGTGCAGACTCTGCAGTATGACGATCTTGGTGAAGTGCACGCAGCACCCGCAAAGAGTACTTATTCAATTGGCCCTTTGAAGTCTACATCAGGTGAACGGGTGAAAATGAAGGTGAAAGTTCGCTTGAATTTGAATGATATTGTGTCTATAGAGTCGGCAACTGTTTTCGAAAAGAAAGAGGTTCATGGGGTTCTAGAGGTAACAGAAGTTCGCGTGTCTGTGGCCGAATTAGTTCATGGAGGAATGACTGAAGCAGAAGTGCATAAGGCAAGGAAGAAGGAGTTTGAGATGGCTTCACAAGATCGATTAATGGAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

210

Amino Acids

23.5

Weight (kDa)

8.92

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	7 - 200	4.3e-13	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	2 cut(s)	76, 525
AciI	CCGC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	232, 370
AgsI	TTSAA	7 cut(s)	49, 85, 148, 378, 391, 439, 445
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw21I	GWGCWC	2 cut(s)	20, 351
Alw26I	GTCTC	2 cut(s)	272, 620
Alw44I	GTGCAC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	382, 534
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	439
AseI	ATTAAT	1 cut(s)	620
Asp700I	GAANNNNTTC	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	353, 416, 424, 436
AsuII	TTCGAA	1 cut(s)	480
BaeGI	GKGCMC	2 cut(s)	118, 351
Bbv12I	GWGCWC	2 cut(s)	20, 351
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	272, 620
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	2 cut(s)	323, 459
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmcAI	AGTACT	2 cut(s)	232, 370
Bme1390I	CCNGG	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	616
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	105
Bse3DI	GCAATG	2 cut(s)	99, 128
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	99, 128
BseMII	CTCAG	1 cut(s)	318
BseSI	GKGCMC	2 cut(s)	118, 351
BseXI	GCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	76, 525
BshFI	GGCC	2 cut(s)	384, 536
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	2 cut(s)	20, 351
BsmAI	GTCTC	2 cut(s)	272, 620
BsmI	GAATGC	2 cut(s)	91, 299
BsnI	GGCC	2 cut(s)	384, 536
Bso31I	GGTCTC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	3 cut(s)	20, 118, 351
Bsp143I	GATC	2 cut(s)	334, 613
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	384, 536
BspCNI	CTCAG	1 cut(s)	317
BspDI	ATCGAT	1 cut(s)	616
BspFNI	CGCG	2 cut(s)	76, 525
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	2 cut(s)	99, 128
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	334, 613
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	12, 475
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	78, 351
BstDEI	CTNAG	1 cut(s)	304
BstFNI	CGCG	2 cut(s)	76, 525
BstKTI	GATC	2 cut(s)	337, 616
BstMAI	GTCTC	2 cut(s)	272, 620
BstMBI	GATC	2 cut(s)	334, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 322, 359
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	2 cut(s)	323, 459
BstSLI	GKGCMC	2 cut(s)	118, 351
BstUI	CGCG	2 cut(s)	76, 525
BstV1I	GCAGC	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	384, 536
BsuTUI	ATCGAT	1 cut(s)	616
BtrI	CACGTC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	78, 351
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	231, 369
CviAII	CATG	3 cut(s)	23, 497, 548
CviJI	RGCY	5 cut(s)	80, 274, 384, 536, 605
CviKI_1	RGCY	5 cut(s)	80, 274, 384, 536, 605
CviQI	GTAC	2 cut(s)	231, 369
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	336, 615
DpnII	GATC	2 cut(s)	334, 613
EaeI	YGGCCR	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	301
FaeI	CATG	3 cut(s)	26, 500, 551
FatI	CATG	3 cut(s)	22, 496, 547
FauI	CCCGC	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	384, 536
Hin1II	CATG	3 cut(s)	26, 500, 551
HincII	GTYRAC	2 cut(s)	6, 310
HindII	GTYRAC	2 cut(s)	6, 310
HinfI	GANTC	2 cut(s)	319, 464
HphI	GGTGA	4 cut(s)	353, 416, 424, 436
Hpy166II	GTNNAC	5 cut(s)	6, 310, 349, 396, 407
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	40, 506
Hpy8I	GTNNAC	5 cut(s)	6, 310, 349, 396, 407
HpyAV	CCTTC	3 cut(s)	58, 415, 583
HpyCH4III	ACNGT	2 cut(s)	12, 475
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	8 cut(s)	121, 128, 281, 299, 316, 325, 349, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 322, 359
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	26, 500, 551
Kzo9I	GATC	2 cut(s)	334, 613
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	6 cut(s)	42, 91, 118, 131, 149, 387
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	190, 511
MalI	GATC	2 cut(s)	336, 615
MboI	GATC	2 cut(s)	334, 613
MboII	GAAGA	1 cut(s)	598
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	3 cut(s)	20, 118, 351
MluCI	AATT	6 cut(s)	129, 172, 195, 378, 439, 539
MlyI	GAGTC	2 cut(s)	313, 473
MnlI	CCTC	4 cut(s)	285, 484, 502, 545
Mph1103I	ATGCAT	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	2 cut(s)	91, 299
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	76, 525
MwoI	GCNNNNNNNGC	3 cut(s)	86, 322, 359
NdeII	GATC	2 cut(s)	334, 613
NlaIII	CATG	3 cut(s)	26, 500, 551
NlaIV	GGNNCC	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	480
OliI	CACNNNNGTG	1 cut(s)	13
PctI	GAATGC	2 cut(s)	91, 299
PdmI	GAANNNNTTC	1 cut(s)	543
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	313, 472
PpsI	GAGTC	2 cut(s)	313, 472
PshBI	ATTAAT	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	383
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	232, 370
RsaNI	GTAC	2 cut(s)	231, 369
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	334, 613
Sau96I	GGNCC	1 cut(s)	383
ScaI	AGTACT	2 cut(s)	232, 370
SchI	GAGTC	2 cut(s)	313, 473
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	3 cut(s)	20, 118, 351
SetI	ASST	9 cut(s)	73, 82, 168, 315, 406, 426, 495, 513, 632
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	2 cut(s)	323, 459
SfuI	TTCGAA	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	129, 172, 195, 378, 439, 539
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	12, 475
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	480, 616
TasI	AATT	6 cut(s)	129, 172, 195, 378, 439, 539
TatI	WGTACW	2 cut(s)	230, 368
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	434, 485, 536
VneI	GTGCAC	1 cut(s)	347
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	1 cut(s)	506
ZrmI	AGTACT	2 cut(s)	232, 370
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.