Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012486

Physical Location & Seq

Genomic Coordinates Forward (+)

29409518 .. 29418840

Gene Structure 9323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGACTACTCTGCAAGCTTCGCTTCTCCTTAACCTCCCGCTCACTCCAACTCTTTCTTCTTCTTCTTCTTCTTCACTCAAACGCTTTCACTGCTCTCGCTCGGGTTGTTATAGTTGCAGCCCTGTTTTTCTTCCCAATATCAATGTCTCTTCATCGCCGAGCTCAAGAAATTTCAGATTCAGCGGTCGAAACACGTCGATTCCCTGCACATTGCACCCGGAGAGCGCGAATTTGGATCAAGAATCGAACTTTGTCGACACCCGTTTGGATTCCAAGGGGAAAGAATCGAGCTTGGGTGAAATTAACGGCGGGGATTTGAGTAATAGCTCGGTTGCCGGAGCCGAAAGGCCCGAAAGTGAGAAACTTGAGGCGAAGGAGCAGTCTGGGGAGGTGGGTTTGGAGAATGGGGGTGAGAAGAGTGAGGGAGTGGTGGTGGAGAGTGAGGGAAAGAGTGGGGGTTTGGTTGAGAAGAAGAGTGGGAATGGGTTGCCATTGGTGGTGTTCTTCATGGGGTTGTGGGCAACTGCAAGGAGAGGGTTTGAGAAGGCATTGGCGTCGGAATGGTTCAGTTGGTGGCCCTTTTGGCGGCAGGAGAAGCGGTTGGAGAGGCTGATTGCGGAGGCGGATGCGGATCCCAAGGACCCGGTGAAGCAGAGTGCTCTGTTTGCTGAGCTCAATAAGCACAGTCCTGAGTCTGTCATCAAGCGCTTTGAACAAAGGGATCATGCTGTAGACAGTAGAGGAGTTGCAGAGTATCTTCGAGCTCTTGTGGTCACTGATGCTATAGCTGAATATCTTCCAAACGATGAATCTGGAAAGCCTTCTACTCTTCCTTCACTGTTGCAAGAATTGAAACAGCGTGCATCAGGCAACTTGGATGAACCCTTTGTCAAACCTGGCATAAATGAGAAGCAACCATTGCACGTGCTGATGGTTGAACCGAAAGTATCAAACAAATCTCGTTTTACTCAAGAGCTTGTCTCAACCATCTTGTTCACAGTTGCGGTTGGATTAGTGTGGTTTATGGGTGCAGCTGCTCTTCAAAAGTACATAGGGAGCTTGGGTGGAATAGGTGCTTCAGGTGTTGGCTCAAGTTCTTCCTATACCCCAAAGGAGTTGAATAAAGAAGTGATTCCAGAAAAGAATGTTAAAACCTTTAAAGATGTCAAAGGCTGTGATGATGCAAAGCAAGAGCTTGAGGAGGTAGTGGAGTACCTCAAAAACCCAACAAAGTTTACCCGCCTTGGGGGCAAGCTGCCAAAGGGAATTCTTTTGACAGGAGCACCAGGAACAGGAAAGACATTACTTGCTAAGGCTATTGCTGGAGAAGCTGGGGTGCCATTTTTCTATAGAGCAGGATCTGAGTTTGAAGAAATGTTTGTTGGAGTTGGTGCTCGGCGTGTAAGATCGTTATTTCAAGCAGCTAAGAAAAAGGCTCCTTGCATCATTTTCATTGATGAAATAGATGCTGTTGGATCCACTCGGAAACAATGGGAAGGGCACACAAAGAAGACGCTGCATCAATTACTGGTTGAAATGGATGGTTTCGAGCAGAATGAGGGAATAATTCTGATGGCTGCAACCAACTTGCCTGATATTCTTGATCCAGCATTGACCAGGCCCGGTCGATTCGACAGGCATATTGTTGTTCCAAATCCAGACGTTCGAGGTCGTCAAGAGATATTGGAACTTTATCTTCAAGATAAGCCATTAGCTGATGATGTGGATGCTAAAGCAATAGCCCGTGGCACACCAGGATTTAATGGGGCAGATCTTGCGAACTTGGTTAATATTGCTGCTATAAAAGCAGCTGTTGACGGGGCTGACAAGTTGACTGGTTCACAATTAGAATTTGCCAAGGATCGGATAGTAATGGGAACAGAACGGAAAACAATGTTCATATCTGAAGAGTCAAAAAAGCTCACCGCATACCATGAAAGTGGTCATGCAATTGTTGCTCTGAATACTGAGGGGGCACATCCAATTCACAAGGCTACAATCCTACCTCGTGGATCTGCTTTGGGAATGGTCACCCAGCTCCCTTCAAATGACGAGACATCAATTAGCAAGAAGCAGCTATTAGCTCGTCTTGATGTCTGCATGGGAGGAAGAGTAGCAGAAGAGATCATCTTTGGTCAGGATTTTGTCACAACCGGAGCAAGTAGTGATCTAAACACAGCTACAGAGCTGGCCCACTATATGGTATCAAGCTGTGGTATGAGTGACACAATTGGGCCAGTTCATGTCAAAGAGCGACCAAGTTCTGAAATGCAATCTCGTATTGATGCAGAAGTTGTGAAAATGTTAAGGGAAGCATATGATCGTGTAAAGGTCCTCCTAAAGAAGCATGAGAAGGCGTTACATGCATTGGCAAATTCACTTTTGGAGTATGAGACGCTTAATTCAGAAGAAATTAAGCGTATTACGCTGCCATATCAGGAAGGACGGCTGCCTGAGCTACAAGAAGAGCAACAAGAAGAAGGGGATCTTGTATTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010304 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0030163 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

833

Amino Acids

90.93

Weight (kDa)

5.83

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	423 - 551	7.1e-42	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	574 - 617	4.8e-09	AAA+ lid domain
Peptidase_M41	PF01434	633 - 808	1e-59	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53170
fragaria_vesca	FvH4_5g23210 FvH4_5g23210 FvH4_5g23210
malus_domestica	MD06G1038500.v1.1
prunus_persica	Prupe.5G026500_v2.0.a1
pyrus_communis	pycom06g03220
rosa_chinensis	RchiOBHm_Chr7g0212141
rosa_laevigata	RLG00000002923
rosa_multiflora	Rmu_sc0002283.1_g000047 Rmu_sc0013167.1_g000005
rosa_roxburghii	Rroxscaffold_3G00247080
rosa_rugosa	Rorug07G0131400 Rorug07G0131500
rosa_samantha	Rh7AG264400 Rh7BG258300 Rh7CG280900 Rh7DG270800
rosa_wichuraiana	Rw7G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1336
AccB7I	CCANNNNNTGG	1 cut(s)	2200
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	2 cut(s)	255, 732
AccII	CGCG	1 cut(s)	227
AcsI	RAATTY	5 cut(s)	169, 229, 1266, 1850, 2374
AcuI	CTGAAG	2 cut(s)	1062, 1926
AcvI	CACGTG	1 cut(s)	925
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	2 cut(s)	1049, 1214
AfeI	AGCGCT	1 cut(s)	707
AfiI	CCNNNNNNNGG	6 cut(s)	585, 1245, 1246, 1292, 1863, 2200
AflIII	ACRYGT	1 cut(s)	192
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	4 cut(s)	895, 1285, 1616, 1753
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 1365, 1397
Alw21I	GWGCWC	6 cut(s)	164, 661, 675, 766, 1285, 1396
Alw26I	GTCTC	4 cut(s)	151, 985, 2048, 2387
AlwNI	CAGNNNCTG	1 cut(s)	1361
Ama87I	CYCGRG	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	707
AoxI	GGCC	5 cut(s)	347, 575, 1619, 2190, 2234
ApoI	RAATTY	5 cut(s)	169, 229, 1266, 1850, 2374
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
Asp700I	GAANNNNTTC	3 cut(s)	795, 820, 1131
AspLEI	GCGC	2 cut(s)	227, 708
AspS9I	GGNCC	7 cut(s)	348, 576, 640, 1620, 2191, 2234, 2332
AsuC2I	CCSGG	3 cut(s)	218, 644, 1623
AsuHPI	GGTGA	5 cut(s)	308, 422, 658, 1915, 2023
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	640, 2332
BaeGI	GKGCMC	2 cut(s)	1503, 1978
BamHI	GGATCC	2 cut(s)	631, 1475
BanI	GGYRCC	1 cut(s)	1336
BanII	GRGCYC	3 cut(s)	164, 675, 766
BauI	CACGAG	1 cut(s)	2007
BbrPI	CACGTG	1 cut(s)	925
BbsI	GAAGAC	1 cut(s)	1517
Bbv12I	GWGCWC	6 cut(s)	164, 661, 675, 766, 1285, 1396
BccI	CCATC	4 cut(s)	925, 995, 1535, 1567
BceAI	ACGGC	2 cut(s)	322, 2462
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	4 cut(s)	897, 1287, 1618, 1755
BcnI	CCSGG	3 cut(s)	218, 644, 1623
BcoDI	GTCTC	4 cut(s)	151, 985, 2048, 2387
BfmI	CTRYAG	4 cut(s)	729, 783, 1348, 2181
BfoI	RGCGCY	1 cut(s)	709
BglI	GCCNNNNNGGC	2 cut(s)	583, 1248
BglII	AGATCT	1 cut(s)	1771
BlpI	GCTNAGC	1 cut(s)	669
Bme1390I	CCNGG	7 cut(s)	218, 644, 897, 1287, 1618, 1623, 1755
Bme18I	GGWCC	2 cut(s)	640, 2332
BmeT110I	CYCGRG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	7 cut(s)	348, 576, 640, 1620, 2191, 2234, 2332
BmiI	GGNNCC	6 cut(s)	340, 633, 642, 1338, 1437, 1477
BmrFI	CCNGG	7 cut(s)	218, 644, 897, 1287, 1618, 1623, 1755
BmsI	GCATC	9 cut(s)	616, 769, 872, 1171, 1452, 1456, 1528, 1717, 2275
BpiI	GAAGAC	1 cut(s)	1517
BplI	GAGNNNNNCTC	2 cut(s)	965, 997
BpmI	CTGGAG	1 cut(s)	1344
Bpu10I	CCTNAGC	2 cut(s)	1311, 2454
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	5 cut(s)	148, 386, 954, 1075, 1217
BpuMI	CCSGG	3 cut(s)	218, 644, 1623
BsaAI	YACGTR	1 cut(s)	925
BsaBI	GATNNNNATC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	5 cut(s)	273, 636, 1243, 1744, 1857
BsaWI	WCCGGW	1 cut(s)	2153
BsaXI	ACNNNNNCTCC	8 cut(s)	417, 447, 584, 614, 1048, 1078, 2097, 2127
Bsc4I	CCNNNNNNNGG	6 cut(s)	585, 1245, 1246, 1292, 1863, 2200
Bse1I	ACTGG	3 cut(s)	1533, 1840, 2237
Bse3DI	GCAATG	2 cut(s)	209, 917
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	4 cut(s)	897, 1287, 1618, 1755
BseDI	CCNNGG	5 cut(s)	273, 636, 1243, 1744, 1857
BseGI	GGATG	5 cut(s)	631, 883, 1546, 1732, 1978
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	6 cut(s)	585, 1245, 1246, 1292, 1863, 2200
BseMI	GCAATG	2 cut(s)	209, 917
BseMII	CTCAG	5 cut(s)	660, 681, 1353, 1959, 2445
BseNI	ACTGG	3 cut(s)	1533, 1840, 2237
BseRI	GAGGAG	2 cut(s)	756, 1214
BseSI	GKGCMC	2 cut(s)	1503, 1978
BseYI	CCCAGC	2 cut(s)	1331, 2034
BsgI	GTGCAG	2 cut(s)	190, 1050
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	2 cut(s)	187, 1627
BshFI	GGCC	5 cut(s)	349, 577, 1621, 2192, 2236
BshNI	GGYRCC	1 cut(s)	1336
BsiEI	CGRYCG	2 cut(s)	187, 1627
BsiHKAI	GWGCWC	6 cut(s)	164, 661, 675, 766, 1285, 1396
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	5 cut(s)	218, 336, 644, 1623, 2154
BslI	CCNNNNNNNGG	6 cut(s)	585, 1245, 1246, 1292, 1863, 2200
BsmAI	GTCTC	4 cut(s)	151, 985, 2048, 2387
BsmBI	CGTCTC	1 cut(s)	2387
BsnI	GGCC	5 cut(s)	349, 577, 1621, 2192, 2236
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	8 cut(s)	164, 661, 675, 766, 1285, 1396, 1503, 1978
Bsp1720I	GCTNAGC	1 cut(s)	669
BspANI	GGCC	5 cut(s)	349, 577, 1621, 2192, 2236
BspCNI	CTCAG	5 cut(s)	661, 682, 1354, 1960, 2446
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	6 cut(s)	340, 633, 642, 1338, 1437, 1477
BspQI	GCTCTTC	2 cut(s)	1044, 2460
BspT107I	GGYRCC	1 cut(s)	1336
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	2 cut(s)	209, 917
BsrI	ACTGG	3 cut(s)	1533, 1840, 2237
BssECI	CCNNGG	5 cut(s)	273, 636, 1243, 1744, 1857
BssNI	GRCGYC	1 cut(s)	554
BssSI	CACGAG	1 cut(s)	2007
BssT1I	CCWWGG	4 cut(s)	273, 636, 1243, 1857
Bst2BI	CACGAG	1 cut(s)	2007
Bst2UI	CCWGG	4 cut(s)	897, 1287, 1618, 1755
Bst4CI	ACNGT	4 cut(s)	686, 737, 840, 1000
Bst6I	CTCTTC	9 cut(s)	154, 410, 467, 834, 1044, 1902, 2104, 2115, 2460
BstACI	GRCGYC	1 cut(s)	554
BstAPI	GCANNNNNTGC	3 cut(s)	919, 1775, 1955
BstBAI	YACGTR	1 cut(s)	925
BstC8I	GCNNGC	4 cut(s)	15, 861, 1253, 2190
BstDEI	CTNAG	7 cut(s)	669, 690, 1311, 1362, 1425, 1968, 2454
BstDSI	CCRYGG	1 cut(s)	1744
BstEII	GGTNACC	1 cut(s)	2029
BstF5I	GGATG	5 cut(s)	631, 883, 1546, 1732, 1978
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	2 cut(s)	227, 708
BstMAI	GTCTC	4 cut(s)	151, 985, 2048, 2387
BstMCI	CGRYCG	2 cut(s)	187, 1627
BstNI	CCWGG	4 cut(s)	897, 1287, 1618, 1755
BstNSI	RCATGY	1 cut(s)	2366
BstPI	GGTNACC	1 cut(s)	2029
BstSCI	CCNGG	7 cut(s)	216, 642, 895, 1285, 1616, 1621, 1753
BstSFI	CTRYAG	4 cut(s)	729, 783, 1348, 2181
BstSLI	GKGCMC	2 cut(s)	1503, 1978
BstUI	CGCG	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	1517
BstX2I	RGATCY	6 cut(s)	631, 1358, 1475, 1771, 2012, 2485
BstXI	CCANNNNNNTGG	1 cut(s)	1940
BstYI	RGATCY	6 cut(s)	631, 1358, 1475, 1771, 2012, 2485
BsuRI	GGCC	5 cut(s)	349, 577, 1621, 2192, 2236
BtgI	CCRYGG	1 cut(s)	1744
BtgZI	GCGATG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	195
BtsCI	GGATG	5 cut(s)	631, 883, 1546, 1732, 1978
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	88, 774, 836
Cac8I	GCNNGC	4 cut(s)	15, 861, 1253, 2190
CaiI	CAGNNNCTG	1 cut(s)	1361
CfoI	GCGC	2 cut(s)	227, 708
Cfr13I	GGNCC	7 cut(s)	348, 576, 640, 1620, 2191, 2234, 2332
CseI	GACGC	3 cut(s)	543, 1522, 2404
Csp6I	GTAC	2 cut(s)	1048, 1213
CviAII	CATG	8 cut(s)	508, 725, 1934, 1946, 2101, 2243, 2348, 2363
CviQI	GTAC	2 cut(s)	1048, 1213
DdeI	CTNAG	7 cut(s)	669, 690, 1311, 1362, 1425, 1968, 2454
DraI	TTTAAA	1 cut(s)	1159
Eam1104I	CTCTTC	9 cut(s)	154, 410, 467, 834, 1044, 1902, 2104, 2115, 2460
EarI	CTCTTC	9 cut(s)	154, 410, 467, 834, 1044, 1902, 2104, 2115, 2460
EciI	GGCGGA	1 cut(s)	638
Ecl136II	GAGCTC	3 cut(s)	162, 673, 764
Eco130I	CCWWGG	4 cut(s)	273, 636, 1243, 1857
Eco24I	GRGCYC	3 cut(s)	164, 675, 766
Eco47I	GGWCC	2 cut(s)	640, 2332
Eco47III	AGCGCT	1 cut(s)	707
Eco53kI	GAGCTC	3 cut(s)	162, 673, 764
Eco57I	CTGAAG	2 cut(s)	1062, 1926
Eco72I	CACGTG	1 cut(s)	925
Eco88I	CYCGRG	1 cut(s)	100
Eco91I	GGTNACC	1 cut(s)	2029
EcoICRI	GAGCTC	3 cut(s)	162, 673, 764
EcoO109I	RGGNCCY	2 cut(s)	640, 2332
EcoO65I	GGTNACC	1 cut(s)	2029
EcoRI	GAATTC	1 cut(s)	1266
EcoRII	CCWGG	4 cut(s)	895, 1285, 1616, 1753
EcoT14I	CCWWGG	4 cut(s)	273, 636, 1243, 1857
EcoT22I	ATGCAT	1 cut(s)	2368
EcoT38I	GRGCYC	3 cut(s)	164, 675, 766
ErhI	CCWWGG	4 cut(s)	273, 636, 1243, 1857
Esp3I	CGTCTC	1 cut(s)	2387
FaeI	CATG	8 cut(s)	511, 728, 1937, 1949, 2104, 2246, 2351, 2366
FalI	AAGNNNNNCTT	2 cut(s)	38, 2472
FatI	CATG	8 cut(s)	507, 724, 1933, 1945, 2100, 2242, 2347, 2362
FauI	CCCGC	3 cut(s)	45, 302, 1247
FauNDI	CATATG	1 cut(s)	2317
FblI	GTMKAC	2 cut(s)	255, 732
FokI	GGATG	5 cut(s)	638, 890, 1553, 1739, 1965
FriOI	GRGCYC	3 cut(s)	164, 675, 766
GlaI	GCGC	2 cut(s)	226, 707
GsaI	CCCAGC	2 cut(s)	1335, 2038
GsuI	CTGGAG	1 cut(s)	1344
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	5 cut(s)	349, 577, 1621, 2192, 2236
HapII	CCGG	5 cut(s)	218, 336, 644, 1623, 2154
HgaI	GACGC	3 cut(s)	543, 1522, 2404
HhaI	GCGC	2 cut(s)	227, 708
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	8 cut(s)	511, 728, 1937, 1949, 2104, 2246, 2351, 2366
Hin6I	GCGC	2 cut(s)	225, 706
HinP1I	GCGC	2 cut(s)	225, 706
HincII	GTYRAC	3 cut(s)	256, 1816, 1833
HindII	GTYRAC	3 cut(s)	256, 1816, 1833
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	5 cut(s)	218, 336, 644, 1623, 2154
HphI	GGTGA	5 cut(s)	308, 422, 658, 1915, 2023
Hpy166II	GTNNAC	7 cut(s)	256, 733, 996, 1236, 1816, 1833, 1841
Hpy8I	GTNNAC	7 cut(s)	256, 733, 996, 1236, 1816, 1833, 1841
Hpy99I	CGWCG	2 cut(s)	199, 559
HpyAV	CCTTC	9 cut(s)	367, 538, 831, 843, 1490, 2052, 2347, 2435, 2474
HpyCH4III	ACNGT	4 cut(s)	686, 737, 840, 1000
HpyCH4IV	ACGT	3 cut(s)	194, 924, 1662
HpyF3I	CTNAG	7 cut(s)	669, 690, 1311, 1362, 1425, 1968, 2454
HpySE526I	ACGT	3 cut(s)	194, 924, 1662
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	8 cut(s)	511, 728, 1937, 1949, 2104, 2246, 2351, 2366
HspAI	GCGC	2 cut(s)	225, 706
LguI	GCTCTTC	2 cut(s)	1044, 2460
LmnI	GCTCC	7 cut(s)	338, 376, 1056, 1280, 1441, 2043, 2156
LweI	GCATC	9 cut(s)	616, 769, 872, 1171, 1452, 1456, 1528, 1717, 2275
MaeII	ACGT	3 cut(s)	194, 924, 1662
MaeIII	GTNAC	5 cut(s)	772, 2029, 2146, 2222, 2358
MbiI	CCGCTC	1 cut(s)	40
MfeI	CAATTG	2 cut(s)	1950, 2229
MflI	RGATCY	6 cut(s)	631, 1358, 1475, 1771, 2012, 2485
MhlI	GDGCHC	8 cut(s)	164, 661, 675, 766, 1285, 1396, 1503, 1978
MlyI	GAGTC	2 cut(s)	701, 1919
MmeI	TCCRAC	6 cut(s)	71, 537, 582, 988, 1363, 1453
Mph1103I	ATGCAT	1 cut(s)	2368
MroXI	GAANNNNTTC	3 cut(s)	795, 820, 1131
MseI	TTAA	9 cut(s)	30, 303, 1149, 1158, 1761, 1788, 2306, 2400, 2415
MslI	CAYNNNNRTG	1 cut(s)	1938
MspA1I	CMGCKG	3 cut(s)	183, 1034, 1811
MspI	CCGG	5 cut(s)	218, 336, 644, 1623, 2154
MspR9I	CCNGG	7 cut(s)	218, 644, 897, 1287, 1618, 1623, 1755
MunI	CAATTG	2 cut(s)	1950, 2229
MvaI	CCWGG	4 cut(s)	897, 1287, 1618, 1755
MvnI	CGCG	1 cut(s)	227
NciI	CCSGG	3 cut(s)	218, 644, 1623
NdeI	CATATG	1 cut(s)	2317
NlaIII	CATG	8 cut(s)	511, 728, 1937, 1949, 2104, 2246, 2351, 2366
NlaIV	GGNNCC	6 cut(s)	340, 633, 642, 1338, 1437, 1477
NmeAIII	GCCGAG	2 cut(s)	183, 1375
NmuCI	GTSAC	4 cut(s)	772, 2029, 2146, 2222
NsiI	ATGCAT	1 cut(s)	2368
NspI	RCATGY	1 cut(s)	2366
PciSI	GCTCTTC	2 cut(s)	1044, 2460
PdmI	GAANNNNTTC	3 cut(s)	795, 820, 1131
PfeI	GAWTC	8 cut(s)	177, 199, 242, 269, 284, 809, 1132, 1629
PflMI	CCANNNNNTGG	1 cut(s)	2200
PleI	GAGTC	2 cut(s)	700, 1918
PmaCI	CACGTG	1 cut(s)	925
PmlI	CACGTG	1 cut(s)	925
PpsI	GAGTC	2 cut(s)	700, 1918
Ppu21I	YACGTR	1 cut(s)	925
PpuMI	RGGWCCY	2 cut(s)	640, 2332
Psp124BI	GAGCTC	3 cut(s)	164, 675, 766
Psp5II	RGGWCCY	2 cut(s)	640, 2332
Psp6I	CCWGG	4 cut(s)	895, 1285, 1616, 1753
PspCI	CACGTG	1 cut(s)	925
PspEI	GGTNACC	1 cut(s)	2029
PspFI	CCCAGC	2 cut(s)	1331, 2034
PspGI	CCWGG	4 cut(s)	895, 1285, 1616, 1753
PspN4I	GGNNCC	6 cut(s)	340, 633, 642, 1338, 1437, 1477
PspPI	GGNCC	7 cut(s)	348, 576, 640, 1620, 2191, 2234, 2332
PspPPI	RGGWCCY	2 cut(s)	640, 2332
PstNI	CAGNNNCTG	1 cut(s)	1361
PsuI	RGATCY	6 cut(s)	631, 1358, 1475, 1771, 2012, 2485
PvuII	CAGCTG	2 cut(s)	1034, 1811
RsaI	GTAC	2 cut(s)	1049, 1214
RsaNI	GTAC	2 cut(s)	1048, 1213
RseI	CAYNNNNRTG	1 cut(s)	1938
SacI	GAGCTC	3 cut(s)	164, 675, 766
SalI	GTCGAC	1 cut(s)	254
SapI	GCTCTTC	2 cut(s)	1044, 2460
SaqAI	TTAA	9 cut(s)	30, 303, 1149, 1158, 1761, 1788, 2306, 2400, 2415
Sau96I	GGNCC	7 cut(s)	348, 576, 640, 1620, 2191, 2234, 2332
SchI	GAGTC	2 cut(s)	701, 1919
ScrFI	CCNGG	7 cut(s)	218, 644, 897, 1287, 1618, 1623, 1755
SduI	GDGCHC	8 cut(s)	164, 661, 675, 766, 1285, 1396, 1503, 1978
SfaNI	GCATC	9 cut(s)	616, 769, 872, 1171, 1452, 1456, 1528, 1717, 2275
SfcI	CTRYAG	4 cut(s)	729, 783, 1348, 2181
SinI	GGWCC	2 cut(s)	640, 2332
SmiMI	CAYNNNNRTG	1 cut(s)	1938
SmlI	CTYRAG	5 cut(s)	163, 365, 969, 1090, 1196
SmoI	CTYRAG	5 cut(s)	163, 365, 969, 1090, 1196
SspI	AATATT	1 cut(s)	1792
SstI	GAGCTC	3 cut(s)	164, 675, 766
StyD4I	CCNGG	7 cut(s)	216, 642, 895, 1285, 1616, 1621, 1753
StyI	CCWWGG	4 cut(s)	273, 636, 1243, 1857
TaaI	ACNGT	4 cut(s)	686, 737, 840, 1000
TaiI	ACGT	3 cut(s)	197, 927, 1665
TatI	WGTACW	1 cut(s)	1047
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	8 cut(s)	177, 199, 242, 269, 284, 809, 1132, 1629
Tru1I	TTAA	9 cut(s)	30, 303, 1149, 1158, 1761, 1788, 2306, 2400, 2415
Tru9I	TTAA	9 cut(s)	30, 303, 1149, 1158, 1761, 1788, 2306, 2400, 2415
TscAI	CASTG	3 cut(s)	95, 781, 843
TseFI	GTSAC	4 cut(s)	772, 2029, 2146, 2222
Tsp45I	GTSAC	4 cut(s)	772, 2029, 2146, 2222
TspDTI	ATGAA	9 cut(s)	141, 496, 822, 894, 1441, 1473, 1888, 1950, 2231
TspGWI	ACGGA	1 cut(s)	1900
TspRI	CASTG	3 cut(s)	95, 781, 843
Van91I	CCANNNNNTGG	1 cut(s)	2200
VpaK11BI	GGWCC	2 cut(s)	640, 2332
XapI	RAATTY	5 cut(s)	169, 229, 1266, 1850, 2374
XceI	RCATGY	1 cut(s)	2366
XmiI	GTMKAC	2 cut(s)	255, 732
XmnI	GAANNNNTTC	3 cut(s)	795, 820, 1131
Zsp2I	ATGCAT	1 cut(s)	2368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.