Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012486

Physical Location & Seq

Genomic Coordinates Forward (+)

23504640 .. 23515784

Gene Structure 11145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG258300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGACTACTCTGCAAGCTTCGCTTCTCCTTAACCTCCCACTCACTCCAACTCTTTCTTCTTCTTCTTCACTCAAACGCTTTTACTTCTCTCGCTGCTCGGCTTGTTATAGTTGCAGCCCTGTTTTTCTTCTCAATATCAATGTCTCTTCATCGCCGAGCTCAAGAAATTTCAGATTCAGCGGTCGGAACACGTCGATTCCCTGCACATTGCACCCGGAGAACGCGAATTTGGATCAAGAATCGAACTTTGTCGACACCCGTTTGGATTCCGAGGGGAAAGAATCGAGCTTGGATGAAATTAACGGCGGGGATTTGAGTAATAGCTCGGTTGCCGGAGCCGAAAGGCCCGAAAGTGAGAAACTTGAGGCGAAGGGGCAGTCTGGGGAGGTGGGTTTGGAGAATGGGGGTGAGAAGAGTGAGGGAGTGGTGGTGGAGAGTGAGGGAAAGAGTGGGGTTTTGGTTGGGAAGAAGAGTGGGAATGGGTTGCCATTGGTGGTGTTCTTCATGGGGTTGTGGGCAACTGCAAGGAGAGGGTTTGAGAAGGCATTGGCGTCGGAATGGTTCAGTTGGTGGCCCTTTTGGCGGCAGGAGAAGCGGTTGGAGAGGCTGATTGCGGAGGCGGATGCGGATCCCAAGGACCCGGTGAAGCAGAGTGCTCTGTTTGCTGAGCTCAATAAGCACAGTCCTGAGTCTGTCATCAAGCGCTTTGAACAAAGGGATCACGTTGTAGACAGTAGAGGAGTTGCAGAGTATCTTCGTGCTCTTGTGGTCACTGATGCTATAACTGATTATCTTCCAAACGATGAATCTGGAAAGCCTTCTACTCTTCCTTCGCTGTTGCAAGAATTGAAACAGCGTGCATCAGGCAACTTGGATGAACCCTTTGTCAAACCTGGCATAAATGAGAAGCAACCATTGCACGTGCTGATGGTTGAACCGAAAGTATCAAACAAATCTCGTTTTACTCAAGAGCTTGTCTCAACCATCTTGTTCACAGTTGCGGTTGGATTAGTGTGGTTTATGGGTGCAGCTGCTCTTCAAAAGTACATAGGGAGCTTGGGTGGAATAGGTGCTTCAGGTGTTGGCTCAGGTTCTTCCTATACCCCAAAGGAGTTGAATAAAGAAGTGATTCCAGAAAAGAATGTTAAAACCTTTAAAGATGTCAAAGGTTGTGATGATGCAAAGCAAGAGCTTGAGGAGGTAGTGGAGTACCTCAAAAACCCAACTAAATTTACCCGCCTTGGGGGCAAGTTGCCAAAGGGAATTCTTTTGACAGGAGCACCAGGAACTGGAAAGACATTACTTGCTAAGGCTATTGCTGGAGAAGCTGGGGTGCCATTTTTCTATAGAGCAGGATCTGAGTTTGAAGAAATGTTTGTTGGAGTTGGTGCTCGGCGTGTAAGATCGTTATTTCAAGCAGCTAAGAAAAAGGCTCCTTGCATCATTTTCATTGATGAAATAGATGCTGTTGGATCCACTCGGAAACAATGGGAAGGGCACACAAAGAAGACGCTGCATCAATTACTGGTTGAAATGGATGGTTTCGAGCAGAATGAGGGAATAATTCTGATGGCTGCAACCAACTTGCCTGATATTCTTGATCCAGCATTGACCAGGCCCGGTCGATTCGACAGGCATATTGTTGTTCCAAATCCAGACGTTCGAGGTCGTCAAGAGATATTGGAACTTTATCTTCAAGATAAGCCATTAGCTGATGATGTGGATGCTAAAGCAATAGCCCGTGGCACACCAGGATTTAATGGGGCAGATCTTGCGAACTTGGTTAATATTGCTGCTATAAAAGCTGCTGTTGACGGGGCTGACAAGTTGACTGGTTCACAATTAGAATTTGCCAAGGATCGGATAGTAATGGGAACAGAACGGAAAACAATGTTCATATCTGAAGAGTCAAAAAAGCTCACTGCATACCATGAAAGTGGTCATGCAATTGTTGCTCTGAATACTGAGGGGGCACATCCAATTCACAAGGCTACAATCTTGCCTCGTGGATCTGCTTTGGGAATGGTCACCCAGCTCCCTTCAAATGACGAGACATCAATTAGCAAGAGGCAGCTATTAGCTCGTCTTGATGTCTGCATGGGAGGAAGAGTAGCAGAAGAGATCATCTTTGGTCAGGATTTTGTCACAACTGGAGCAAGTAGTGATCTAAACACAGCTACAGAGCTGGCCCACTATATGGTATCAAGCTGCGGTATGAGTGACACAATTGGGCCAGTTCATGTCAAAGAGCGACCAAGTTCTGAAATGCAATCTCGTATTGATGCAGAAGTTGTGAAAATGTTAAGGGAAGCATATGATCGTGTAAAGGTCCTCCTAAAGAAGCATGAGAAGGCGTTACATGCATTGGCAAATGCACTTTTGGAGTATGAGACACTTAGTTCAGAAGAAATTAAGCGTATTATGCTGCCATATCAGGAAGGACGGCTGCCTGAGCTACAAGAAGAGCAACAAGAAGAAGGGGATCTTGTATTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010304 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0030163 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

832

Amino Acids

90.97

Weight (kDa)

5.73

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	422 - 550	7.1e-42	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	573 - 616	4.8e-09	AAA+ lid domain
Peptidase_M41	PF01434	632 - 807	1.1e-59	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53170
fragaria_vesca	FvH4_5g23210 FvH4_5g23210 FvH4_5g23210
malus_domestica	MD06G1038500.v1.1
prunus_persica	Prupe.5G026500_v2.0.a1
pyrus_communis	pycom06g03220
rosa_chinensis	RchiOBHm_Chr7g0212141
rosa_laevigata	RLG00000002923
rosa_multiflora	Rmu_sc0002283.1_g000047 Rmu_sc0013167.1_g000005
rosa_roxburghii	Rroxscaffold_3G00247080
rosa_rugosa	Rorug07G0131400 Rorug07G0131500
rosa_samantha	Rh7AG264400 Rh7BG258300 Rh7CG280900 Rh7DG270800
rosa_wichuraiana	Rw7G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1333
AccB7I	CCANNNNNTGG	2 cut(s)	1289, 2197
AccI	GTMKAC	2 cut(s)	252, 729
AccII	CGCG	1 cut(s)	224
AcsI	RAATTY	5 cut(s)	166, 226, 1229, 1263, 1847
AcuI	CTGAAG	2 cut(s)	1059, 1923
AcvI	CACGTG	1 cut(s)	922
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	2 cut(s)	1046, 1211
AfeI	AGCGCT	1 cut(s)	704
AfiI	CCNNNNNNNGG	6 cut(s)	582, 1242, 1243, 1289, 1860, 2197
AflIII	ACRYGT	1 cut(s)	189
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	4 cut(s)	892, 1282, 1613, 1750
AjuI	GAANNNNNNNTTGG	6 cut(s)	40, 72, 212, 244, 1362, 1394
Alw21I	GWGCWC	6 cut(s)	161, 658, 672, 763, 1282, 1393
Alw26I	GTCTC	4 cut(s)	148, 982, 2045, 2384
AlwNI	CAGNNNCTG	2 cut(s)	1289, 1358
Aor51HI	AGCGCT	1 cut(s)	704
AoxI	GGCC	5 cut(s)	344, 572, 1616, 2187, 2231
ApoI	RAATTY	5 cut(s)	166, 226, 1229, 1263, 1847
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp700I	GAANNNNTTC	2 cut(s)	817, 1128
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	7 cut(s)	345, 573, 637, 1617, 2188, 2231, 2329
AsuC2I	CCSGG	3 cut(s)	215, 641, 1620
AsuHPI	GGTGA	3 cut(s)	419, 655, 2020
AvaII	GGWCC	2 cut(s)	637, 2329
BaeGI	GKGCMC	2 cut(s)	1500, 1975
BamHI	GGATCC	2 cut(s)	628, 1472
BanI	GGYRCC	1 cut(s)	1333
BanII	GRGCYC	2 cut(s)	161, 672
BauI	CACGAG	1 cut(s)	2004
BbrPI	CACGTG	1 cut(s)	922
BbsI	GAAGAC	1 cut(s)	1514
Bbv12I	GWGCWC	6 cut(s)	161, 658, 672, 763, 1282, 1393
BccI	CCATC	4 cut(s)	922, 992, 1532, 1564
BceAI	ACGGC	2 cut(s)	319, 2459
BcgI	CGANNNNNNTGC	2 cut(s)	534, 568
BciT130I	CCWGG	4 cut(s)	894, 1284, 1615, 1752
BcnI	CCSGG	3 cut(s)	215, 641, 1620
BcoDI	GTCTC	4 cut(s)	148, 982, 2045, 2384
BfmI	CTRYAG	2 cut(s)	1345, 2178
BfoI	RGCGCY	1 cut(s)	706
BglI	GCCNNNNNGGC	2 cut(s)	580, 1245
BglII	AGATCT	1 cut(s)	1768
BlpI	GCTNAGC	1 cut(s)	666
Bme1390I	CCNGG	7 cut(s)	215, 641, 894, 1284, 1615, 1620, 1752
Bme18I	GGWCC	2 cut(s)	637, 2329
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	7 cut(s)	345, 573, 637, 1617, 2188, 2231, 2329
BmiI	GGNNCC	6 cut(s)	337, 630, 639, 1335, 1434, 1474
BmrFI	CCNGG	7 cut(s)	215, 641, 894, 1284, 1615, 1620, 1752
BmsI	GCATC	9 cut(s)	613, 766, 869, 1168, 1449, 1453, 1525, 1714, 2272
BpiI	GAAGAC	1 cut(s)	1514
BplI	GAGNNNNNCTC	2 cut(s)	962, 994
BpmI	CTGGAG	2 cut(s)	1341, 2172
Bpu10I	CCTNAGC	3 cut(s)	1087, 1308, 2451
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	4 cut(s)	145, 383, 951, 1214
BpuMI	CCSGG	3 cut(s)	215, 641, 1620
BsaAI	YACGTR	1 cut(s)	922
BsaBI	GATNNNNATC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	5 cut(s)	270, 633, 1240, 1741, 1854
BsaXI	ACNNNNNCTCC	8 cut(s)	414, 444, 581, 611, 1045, 1075, 2094, 2124
Bsc4I	CCNNNNNNNGG	6 cut(s)	582, 1242, 1243, 1289, 1860, 2197
Bse1I	ACTGG	5 cut(s)	1294, 1530, 1837, 2155, 2234
Bse3DI	GCAATG	2 cut(s)	206, 914
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	4 cut(s)	894, 1284, 1615, 1752
BseDI	CCNNGG	5 cut(s)	270, 633, 1240, 1741, 1854
BseGI	GGATG	6 cut(s)	298, 628, 880, 1543, 1729, 1975
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	6 cut(s)	582, 1242, 1243, 1289, 1860, 2197
BseMI	GCAATG	2 cut(s)	206, 914
BseMII	CTCAG	6 cut(s)	657, 678, 1101, 1350, 1956, 2442
BseNI	ACTGG	5 cut(s)	1294, 1530, 1837, 2155, 2234
BseRI	GAGGAG	2 cut(s)	753, 1211
BseSI	GKGCMC	2 cut(s)	1500, 1975
BseYI	CCCAGC	2 cut(s)	1328, 2031
BsgI	GTGCAG	2 cut(s)	187, 1047
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	2 cut(s)	184, 1624
BshFI	GGCC	5 cut(s)	346, 574, 1618, 2189, 2233
BshNI	GGYRCC	1 cut(s)	1333
BsiEI	CGRYCG	2 cut(s)	184, 1624
BsiHKAI	GWGCWC	6 cut(s)	161, 658, 672, 763, 1282, 1393
BsiSI	CCGG	4 cut(s)	215, 333, 641, 1620
BslI	CCNNNNNNNGG	6 cut(s)	582, 1242, 1243, 1289, 1860, 2197
BsmAI	GTCTC	4 cut(s)	148, 982, 2045, 2384
BsnI	GGCC	5 cut(s)	346, 574, 1618, 2189, 2233
Bsp1286I	GDGCHC	8 cut(s)	161, 658, 672, 763, 1282, 1393, 1500, 1975
Bsp1720I	GCTNAGC	1 cut(s)	666
BspANI	GGCC	5 cut(s)	346, 574, 1618, 2189, 2233
BspCNI	CTCAG	6 cut(s)	658, 679, 1100, 1351, 1957, 2443
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	6 cut(s)	337, 630, 639, 1335, 1434, 1474
BspQI	GCTCTTC	2 cut(s)	1041, 2457
BspT107I	GGYRCC	1 cut(s)	1333
BsrDI	GCAATG	2 cut(s)	206, 914
BsrI	ACTGG	5 cut(s)	1294, 1530, 1837, 2155, 2234
BssECI	CCNNGG	5 cut(s)	270, 633, 1240, 1741, 1854
BssNI	GRCGYC	1 cut(s)	551
BssSI	CACGAG	1 cut(s)	2004
BssT1I	CCWWGG	3 cut(s)	633, 1240, 1854
Bst2BI	CACGAG	1 cut(s)	2004
Bst2UI	CCWGG	4 cut(s)	894, 1284, 1615, 1752
Bst4CI	ACNGT	3 cut(s)	683, 734, 997
Bst6I	CTCTTC	9 cut(s)	151, 407, 464, 831, 1041, 1899, 2101, 2112, 2457
BstACI	GRCGYC	1 cut(s)	551
BstAPI	GCANNNNNTGC	3 cut(s)	916, 1772, 1952
BstBAI	YACGTR	1 cut(s)	922
BstC8I	GCNNGC	3 cut(s)	15, 858, 2187
BstDEI	CTNAG	9 cut(s)	666, 687, 1087, 1308, 1359, 1422, 1965, 2396, 2451
BstDSI	CCRYGG	1 cut(s)	1741
BstEII	GGTNACC	1 cut(s)	2026
BstF5I	GGATG	6 cut(s)	298, 628, 880, 1543, 1729, 1975
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstMAI	GTCTC	4 cut(s)	148, 982, 2045, 2384
BstMCI	CGRYCG	2 cut(s)	184, 1624
BstNI	CCWGG	4 cut(s)	894, 1284, 1615, 1752
BstNSI	RCATGY	1 cut(s)	2363
BstPI	GGTNACC	1 cut(s)	2026
BstSCI	CCNGG	7 cut(s)	213, 639, 892, 1282, 1613, 1618, 1750
BstSFI	CTRYAG	2 cut(s)	1345, 2178
BstSLI	GKGCMC	2 cut(s)	1500, 1975
BstUI	CGCG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	1514
BstX2I	RGATCY	6 cut(s)	628, 1355, 1472, 1768, 2009, 2482
BstXI	CCANNNNNNTGG	1 cut(s)	1937
BstYI	RGATCY	6 cut(s)	628, 1355, 1472, 1768, 2009, 2482
BsuRI	GGCC	5 cut(s)	346, 574, 1618, 2189, 2233
BtgI	CCRYGG	1 cut(s)	1741
BtgZI	GCGATG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	6 cut(s)	298, 628, 880, 1543, 1729, 1975
BtsI	GCAGTG	1 cut(s)	1920
BtsIMutI	CAGTG	2 cut(s)	771, 1920
Cac8I	GCNNGC	3 cut(s)	15, 858, 2187
CaiI	CAGNNNCTG	2 cut(s)	1289, 1358
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	7 cut(s)	345, 573, 637, 1617, 2188, 2231, 2329
CseI	GACGC	2 cut(s)	540, 1519
Csp6I	GTAC	2 cut(s)	1045, 1210
CviAII	CATG	7 cut(s)	505, 1931, 1943, 2098, 2240, 2345, 2360
CviQI	GTAC	2 cut(s)	1045, 1210
DdeI	CTNAG	9 cut(s)	666, 687, 1087, 1308, 1359, 1422, 1965, 2396, 2451
DraI	TTTAAA	1 cut(s)	1156
Eam1104I	CTCTTC	9 cut(s)	151, 407, 464, 831, 1041, 1899, 2101, 2112, 2457
EarI	CTCTTC	9 cut(s)	151, 407, 464, 831, 1041, 1899, 2101, 2112, 2457
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	2 cut(s)	159, 670
Eco130I	CCWWGG	3 cut(s)	633, 1240, 1854
Eco24I	GRGCYC	2 cut(s)	161, 672
Eco47I	GGWCC	2 cut(s)	637, 2329
Eco47III	AGCGCT	1 cut(s)	704
Eco53kI	GAGCTC	2 cut(s)	159, 670
Eco57I	CTGAAG	2 cut(s)	1059, 1923
Eco72I	CACGTG	1 cut(s)	922
Eco91I	GGTNACC	1 cut(s)	2026
EcoICRI	GAGCTC	2 cut(s)	159, 670
EcoO109I	RGGNCCY	2 cut(s)	637, 2329
EcoO65I	GGTNACC	1 cut(s)	2026
EcoRI	GAATTC	1 cut(s)	1263
EcoRII	CCWGG	4 cut(s)	892, 1282, 1613, 1750
EcoT14I	CCWWGG	3 cut(s)	633, 1240, 1854
EcoT22I	ATGCAT	1 cut(s)	2365
EcoT38I	GRGCYC	2 cut(s)	161, 672
ErhI	CCWWGG	3 cut(s)	633, 1240, 1854
FaeI	CATG	7 cut(s)	508, 1934, 1946, 2101, 2243, 2348, 2363
FalI	AAGNNNNNCTT	2 cut(s)	38, 2469
FatI	CATG	7 cut(s)	504, 1930, 1942, 2097, 2239, 2344, 2359
FauI	CCCGC	2 cut(s)	299, 1244
FauNDI	CATATG	1 cut(s)	2314
FblI	GTMKAC	2 cut(s)	252, 729
FokI	GGATG	6 cut(s)	305, 635, 887, 1550, 1736, 1962
FriOI	GRGCYC	2 cut(s)	161, 672
GlaI	GCGC	1 cut(s)	704
GsaI	CCCAGC	2 cut(s)	1332, 2035
GsuI	CTGGAG	2 cut(s)	1341, 2172
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	5 cut(s)	346, 574, 1618, 2189, 2233
HapII	CCGG	4 cut(s)	215, 333, 641, 1620
HgaI	GACGC	2 cut(s)	540, 1519
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	7 cut(s)	508, 1934, 1946, 2101, 2243, 2348, 2363
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	3 cut(s)	253, 1813, 1830
HindII	GTYRAC	3 cut(s)	253, 1813, 1830
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	4 cut(s)	215, 333, 641, 1620
HphI	GGTGA	3 cut(s)	419, 655, 2020
Hpy166II	GTNNAC	6 cut(s)	253, 730, 993, 1813, 1830, 1838
Hpy8I	GTNNAC	6 cut(s)	253, 730, 993, 1813, 1830, 1838
Hpy99I	CGWCG	2 cut(s)	196, 556
HpyAV	CCTTC	9 cut(s)	364, 535, 828, 840, 1487, 2049, 2344, 2432, 2471
HpyCH4III	ACNGT	3 cut(s)	683, 734, 997
HpyCH4IV	ACGT	4 cut(s)	191, 723, 921, 1659
HpyF3I	CTNAG	9 cut(s)	666, 687, 1087, 1308, 1359, 1422, 1965, 2396, 2451
HpySE526I	ACGT	4 cut(s)	191, 723, 921, 1659
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	7 cut(s)	508, 1934, 1946, 2101, 2243, 2348, 2363
HspAI	GCGC	1 cut(s)	703
LguI	GCTCTTC	2 cut(s)	1041, 2457
LmnI	GCTCC	6 cut(s)	335, 1053, 1277, 1438, 2040, 2153
LweI	GCATC	9 cut(s)	613, 766, 869, 1168, 1449, 1453, 1525, 1714, 2272
MaeII	ACGT	4 cut(s)	191, 723, 921, 1659
MaeIII	GTNAC	5 cut(s)	769, 2026, 2143, 2219, 2355
MfeI	CAATTG	2 cut(s)	1947, 2226
MflI	RGATCY	6 cut(s)	628, 1355, 1472, 1768, 2009, 2482
MhlI	GDGCHC	8 cut(s)	161, 658, 672, 763, 1282, 1393, 1500, 1975
MlyI	GAGTC	2 cut(s)	698, 1916
MmeI	TCCRAC	7 cut(s)	71, 164, 534, 579, 985, 1360, 1450
Mph1103I	ATGCAT	1 cut(s)	2365
MroXI	GAANNNNTTC	2 cut(s)	817, 1128
MseI	TTAA	8 cut(s)	30, 300, 1146, 1155, 1758, 1785, 2303, 2412
MslI	CAYNNNNRTG	1 cut(s)	1935
MspA1I	CMGCKG	2 cut(s)	180, 1031
MspI	CCGG	4 cut(s)	215, 333, 641, 1620
MspR9I	CCNGG	7 cut(s)	215, 641, 894, 1284, 1615, 1620, 1752
MunI	CAATTG	2 cut(s)	1947, 2226
MvaI	CCWGG	4 cut(s)	894, 1284, 1615, 1752
MvnI	CGCG	1 cut(s)	224
NciI	CCSGG	3 cut(s)	215, 641, 1620
NdeI	CATATG	1 cut(s)	2314
NlaIII	CATG	7 cut(s)	508, 1934, 1946, 2101, 2243, 2348, 2363
NlaIV	GGNNCC	6 cut(s)	337, 630, 639, 1335, 1434, 1474
NmeAIII	GCCGAG	3 cut(s)	77, 180, 1372
NmuCI	GTSAC	4 cut(s)	769, 2026, 2143, 2219
NsiI	ATGCAT	1 cut(s)	2365
NspI	RCATGY	1 cut(s)	2363
PciSI	GCTCTTC	2 cut(s)	1041, 2457
PdmI	GAANNNNTTC	2 cut(s)	817, 1128
PfeI	GAWTC	8 cut(s)	174, 196, 239, 266, 281, 806, 1129, 1626
PflMI	CCANNNNNTGG	2 cut(s)	1289, 2197
PleI	GAGTC	2 cut(s)	697, 1915
PmaCI	CACGTG	1 cut(s)	922
PmlI	CACGTG	1 cut(s)	922
PpsI	GAGTC	2 cut(s)	697, 1915
Ppu21I	YACGTR	1 cut(s)	922
PpuMI	RGGWCCY	2 cut(s)	637, 2329
Psp124BI	GAGCTC	2 cut(s)	161, 672
Psp5II	RGGWCCY	2 cut(s)	637, 2329
Psp6I	CCWGG	4 cut(s)	892, 1282, 1613, 1750
PspCI	CACGTG	1 cut(s)	922
PspEI	GGTNACC	1 cut(s)	2026
PspFI	CCCAGC	2 cut(s)	1328, 2031
PspGI	CCWGG	4 cut(s)	892, 1282, 1613, 1750
PspN4I	GGNNCC	6 cut(s)	337, 630, 639, 1335, 1434, 1474
PspPI	GGNCC	7 cut(s)	345, 573, 637, 1617, 2188, 2231, 2329
PspPPI	RGGWCCY	2 cut(s)	637, 2329
PstNI	CAGNNNCTG	2 cut(s)	1289, 1358
PsuI	RGATCY	6 cut(s)	628, 1355, 1472, 1768, 2009, 2482
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	2 cut(s)	1046, 1211
RsaNI	GTAC	2 cut(s)	1045, 1210
RseI	CAYNNNNRTG	1 cut(s)	1935
SacI	GAGCTC	2 cut(s)	161, 672
SalI	GTCGAC	1 cut(s)	251
SapI	GCTCTTC	2 cut(s)	1041, 2457
SaqAI	TTAA	8 cut(s)	30, 300, 1146, 1155, 1758, 1785, 2303, 2412
Sau96I	GGNCC	7 cut(s)	345, 573, 637, 1617, 2188, 2231, 2329
SchI	GAGTC	2 cut(s)	698, 1916
ScrFI	CCNGG	7 cut(s)	215, 641, 894, 1284, 1615, 1620, 1752
SduI	GDGCHC	8 cut(s)	161, 658, 672, 763, 1282, 1393, 1500, 1975
SfaNI	GCATC	9 cut(s)	613, 766, 869, 1168, 1449, 1453, 1525, 1714, 2272
SfcI	CTRYAG	2 cut(s)	1345, 2178
SinI	GGWCC	2 cut(s)	637, 2329
SmiMI	CAYNNNNRTG	1 cut(s)	1935
SmlI	CTYRAG	4 cut(s)	160, 362, 966, 1193
SmoI	CTYRAG	4 cut(s)	160, 362, 966, 1193
SspI	AATATT	1 cut(s)	1789
SstI	GAGCTC	2 cut(s)	161, 672
StyD4I	CCNGG	7 cut(s)	213, 639, 892, 1282, 1613, 1618, 1750
StyI	CCWWGG	3 cut(s)	633, 1240, 1854
TaaI	ACNGT	3 cut(s)	683, 734, 997
TaiI	ACGT	4 cut(s)	194, 726, 924, 1662
TaqI	TCGA	8 cut(s)	194, 242, 252, 284, 1545, 1624, 1629, 1663
TatI	WGTACW	1 cut(s)	1044
TauI	GCSGC	1 cut(s)	586
TfiI	GAWTC	8 cut(s)	174, 196, 239, 266, 281, 806, 1129, 1626
Tru1I	TTAA	8 cut(s)	30, 300, 1146, 1155, 1758, 1785, 2303, 2412
Tru9I	TTAA	8 cut(s)	30, 300, 1146, 1155, 1758, 1785, 2303, 2412
TscAI	CASTG	2 cut(s)	778, 1927
TseFI	GTSAC	4 cut(s)	769, 2026, 2143, 2219
Tsp45I	GTSAC	4 cut(s)	769, 2026, 2143, 2219
TspGWI	ACGGA	1 cut(s)	1897
TspRI	CASTG	2 cut(s)	778, 1927
Van91I	CCANNNNNTGG	2 cut(s)	1289, 2197
VpaK11BI	GGWCC	2 cut(s)	637, 2329
XapI	RAATTY	5 cut(s)	166, 226, 1229, 1263, 1847
XceI	RCATGY	1 cut(s)	2363
XmiI	GTMKAC	2 cut(s)	252, 729
XmnI	GAANNNNTTC	2 cut(s)	817, 1128
Zsp2I	ATGCAT	1 cut(s)	2365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.