Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012486

Physical Location & Seq

Genomic Coordinates Reverse (-)

40398627 .. 40407745

Gene Structure 9119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGACTACTCTACAAGCTTCGCTTCTCCTTAACCTCCCACTCACTCCAACTCTTTCTTCTTCTTCTTCTTCACTCAAACGCTTTCACTTCTCTCGCTCCTCGGCTTGTTATACTTGCAGCCCTGTTTTTCTTCCCAATATCAATGTCTCTTCATCGCCGAGCTCAAGAAATTTCAGATTCAGCGGTCGGAACACGTCGATTCCCTGCACATTGCACCCGGAGAACGCGAGTTTGGATCAAGAATCGAACTTTGTCGACACCCAGTTGGATTCTAAGAGGAAAGAATCGAGCTTGGATGAAATTAACGGCGGGGATTTGAGTCATAGCTCGGTTGCCGGAGCCGAGAGGCCCCAAAGTGAGAAACTTGAGGCGAAGGAGCAGTCTGGGGAGGTGGGTTTGGAGAATGGGGGTGAGAAGAGTGAGGGAGTGGTGGTGGAGAGTGACGGAAAGAGTGGGGTTTGGTTGAGAAGAAGAGTGGGAATGGGTTGCCATTGTTGGTGGCCGTTTTGGCGGCAGGAGAAGCGGTTGGAGAGGTTGATTGCGGAGGCGGATGCGGATCCCAAGGACCCGGTGAAGCAGAGTGCTCTGTTTGCTGAGCTCAATAAGCACAGTTCAAGTGATCCAGTAACCTCTAGTCCTGAGTCTGTCATCAAGCGCTTTGAACAAAGGGATCACGTTGTAGACAGTAGAGGGGTTGCAGAGTATCTTCGAGCTCTTGTGGTCACTGATGCTATAGCTGAATATCTTCCAAACGATGAATCTGGAAAGCCTTCTACTCTTCCTTCACTGTTGCAAGAATTGAAACAGCGTGCATCAGGCAACTTGGATGAAACCTTTGTCAAACCTGGCATAAATGAGAAGCAACCATTGCACGTGCTGATGGTTGAACCAAAAGTATCAAACAAATCTCGTTTTACTCAAGAGCTTGTCTCAACCATCTTGTTCACAGTTGCGGTTGGATTAGTGTGGTTTATGGGTGCAGCTGCTCTTCAAAAGTACATAGGGAGCTTGGGTGGAATAGGTGCTTCAGGTGTTGGCTCAAGTTCTTCCTATACCCCAAAGGAGTTGAATAAAGAAGTGATTCCAGAAAAGAATGTTAAAACCTTTAAAGATGTCAAAGGCTGTGATGATGCAAAGCAAGAGCTTGAGGAGGTAGTGGAGTACCTCAAAAACCCAACTAAGTTTACCCGCCTTGGGGGCAAGTTGCCAAAGGGAATTCTTTTGACAGGAGCACCAGGAACAGGAAAGACATTACTTGCTAAGGCTATTGCTGGAGAAGCTGGGGTGCCATTTTTCTATAGAGCAGGATCTGAGTTTGAAGAAATGTTTGTTGGAGTTGGTGCTCGGCGTGTAAGATCGTTATTTCAAGCAGCTAAGAAAAAGGCTCCTTGCATCATTTTCATTGATGAAATAGACGCTGTTGGATCCACTCGGAAACAATGGGAAGGGCACACAAAGAAGACGCTGCATCAATTACTGGTTGAAATGGATGGTTTTGAGCAGAATGAGGGAATAATTCTGATGGCTGCAACCAACTTGCCTGATATTCTTGATCCAGCATTGACCAGGCCCGGTCGATTCGACAGGCATCAGTGCTTTGCACTGGGACTAACTTTAGTTTATAGGTCAGTCTGGTTGAAAGAAAAGTTGGGCCTTCTTGGGATTGTTGTCCCAAATCCAGACGTCCGAGGTCGTCAAGAGATATTGGAACTTTATCTTCAAGATAAGCCATTAGCTGATGATGTGGATGCTAAAGCAATAGCCCGTGGCACACCAGGATTTAATGGGGCAGATCTTGCGAACTTGGTTAATATTGCTGCTATAAAAGCTGCTGTTGACGGGGCTGACAAGTTGACTGGTTCACAATTAGAATTTGCCAAGGATAGGATAGTAATGGGAACAGAACGGAAAACAATGTTCATATCTGAAGAGTCAAAAAAGCTCACTGCATACCATGAAAGTGGTCATGCAATTGTTGCTCTGAATACTGAGGGGGCACATCCAATACACAAGGCTACAATCCTGCCTCGTGGATCTGCTTTGGGAATGGTCACCCAGCTCCCTTCAAATGACGAGACATCAATTAGCAAGAAGCAGCTATTAGCTCGTCTTGATGTCTGCATGGGAGGAAGAGTAGCAGAAGAGATCATCTTTGGTCAGGATTTTGTCACAACCGGAGCAAGTAGTGATCTAAGCACAGCTACAGAGCTGGCCCACTATATGGTATCAAGCTGCGGTATGAGTGACGCAATTGGGCCAGTTCATGTCAAAGAGCGACCAAGTTCTGAAATGCAATCTCGTATTGATGCAGAAGTTGTGAAAATGTTAAGGGAAGCATATGATCGTGTAAAGGCCCTCCTAAAGAAGCATGAGAAGGCGTTACATGCATTGGCAAATGCACTTTTGGAGTATGAGACGCTCAATTCAGAAGAAATTAAGCGTATTATGCTGCCATATCAGGAAGGACGGCTGCCAGAGCTACAAGAAGAGCAACAAGAAGAAGGGGATCTTGTATTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010304 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0030163 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

840

Amino Acids

91.92

Weight (kDa)

6.01

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	406 - 533	3.7e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	581 - 624	4.8e-09	AAA+ lid domain
Peptidase_M41	PF01434	640 - 815	4.5e-60	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53170
fragaria_vesca	FvH4_5g23210 FvH4_5g23210 FvH4_5g23210
malus_domestica	MD06G1038500.v1.1
prunus_persica	Prupe.5G026500_v2.0.a1
pyrus_communis	pycom06g03220
rosa_chinensis	RchiOBHm_Chr7g0212141
rosa_laevigata	RLG00000002923
rosa_multiflora	Rmu_sc0002283.1_g000047 Rmu_sc0013167.1_g000005
rosa_roxburghii	Rroxscaffold_3G00247080
rosa_rugosa	Rorug07G0131400 Rorug07G0131500
rosa_samantha	Rh7AG264400 Rh7BG258300 Rh7CG280900 Rh7DG270800
rosa_wichuraiana	Rw7G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1686
AccB1I	GGYRCC	1 cut(s)	1285
AccB7I	CCANNNNNTGG	1 cut(s)	2221
AccI	GTMKAC	2 cut(s)	255, 681
AccII	CGCG	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	169, 1215, 1871
AcuI	CTGAAG	2 cut(s)	1011, 1947
AcvI	CACGTG	1 cut(s)	874
AcyI	GRCGYC	1 cut(s)	1683
AfaI	GTAC	2 cut(s)	998, 1163
AfeI	AGCGCT	1 cut(s)	656
AfiI	CCNNNNNNNGG	5 cut(s)	1194, 1195, 1241, 1884, 2221
AflIII	ACRYGT	1 cut(s)	192
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	4 cut(s)	844, 1234, 1565, 1774
AjuI	GAANNNNNNNTTGG	8 cut(s)	40, 72, 215, 247, 1314, 1346, 1631, 1663
Alw21I	GWGCWC	6 cut(s)	164, 586, 600, 715, 1234, 1345
Alw26I	GTCTC	4 cut(s)	151, 934, 2069, 2408
AlwNI	CAGNNNCTG	1 cut(s)	1310
Aor51HI	AGCGCT	1 cut(s)	656
AoxI	GGCC	7 cut(s)	347, 500, 1568, 1651, 2211, 2255, 2352
ApoI	RAATTY	3 cut(s)	169, 1215, 1871
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
Asp700I	GAANNNNTTC	3 cut(s)	744, 769, 1080
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	7 cut(s)	348, 565, 1569, 1651, 2212, 2255, 2353
AsuC2I	CCSGG	3 cut(s)	218, 569, 1572
AsuHPI	GGTGA	3 cut(s)	422, 583, 2044
AvaII	GGWCC	1 cut(s)	565
BaeGI	GKGCMC	2 cut(s)	1452, 1999
BamHI	GGATCC	2 cut(s)	556, 1424
BanI	GGYRCC	1 cut(s)	1285
BanII	GRGCYC	3 cut(s)	164, 600, 715
BauI	CACGAG	1 cut(s)	2028
BbrPI	CACGTG	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	1466
Bbv12I	GWGCWC	6 cut(s)	164, 586, 600, 715, 1234, 1345
BccI	CCATC	4 cut(s)	874, 944, 1484, 1516
BceAI	ACGGC	3 cut(s)	322, 487, 2483
BciT130I	CCWGG	4 cut(s)	846, 1236, 1567, 1776
BcnI	CCSGG	3 cut(s)	218, 569, 1572
BcoDI	GTCTC	4 cut(s)	151, 934, 2069, 2408
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	3 cut(s)	732, 1297, 2202
BfoI	RGCGCY	1 cut(s)	658
BglI	GCCNNNNNGGC	2 cut(s)	508, 1197
BglII	AGATCT	1 cut(s)	1792
BlpI	GCTNAGC	1 cut(s)	594
Bme1390I	CCNGG	7 cut(s)	218, 569, 846, 1236, 1567, 1572, 1776
Bme18I	GGWCC	1 cut(s)	565
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	7 cut(s)	348, 565, 1569, 1651, 2212, 2255, 2353
BmiI	GGNNCC	7 cut(s)	340, 350, 558, 567, 1287, 1386, 1426
BmrFI	CCNGG	7 cut(s)	218, 569, 846, 1236, 1567, 1572, 1776
BmrI	ACTGGG	2 cut(s)	256, 1613
BmsI	GCATC	9 cut(s)	541, 718, 821, 1120, 1401, 1477, 1597, 1738, 2296
BmuI	ACTGGG	2 cut(s)	256, 1613
BpiI	GAAGAC	1 cut(s)	1466
BplI	GAGNNNNNCTC	2 cut(s)	914, 946
BpmI	CTGGAG	1 cut(s)	1293
Bpu10I	CCTNAGC	1 cut(s)	1260
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	5 cut(s)	148, 386, 903, 1024, 1166
BpuMI	CCSGG	3 cut(s)	218, 569, 1572
BsaAI	YACGTR	1 cut(s)	874
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	1683
BsaJI	CCNNGG	6 cut(s)	99, 561, 1192, 1687, 1765, 1878
BsaWI	WCCGGW	1 cut(s)	2174
BsaXI	ACNNNNNCTCC	8 cut(s)	417, 447, 509, 539, 997, 1027, 2118, 2148
Bsc4I	CCNNNNNNNGG	5 cut(s)	1194, 1195, 1241, 1884, 2221
Bse1I	ACTGG	6 cut(s)	262, 623, 1482, 1608, 1861, 2258
Bse3DI	GCAATG	2 cut(s)	209, 866
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	4 cut(s)	846, 1236, 1567, 1776
BseDI	CCNNGG	6 cut(s)	99, 561, 1192, 1687, 1765, 1878
BseGI	GGATG	6 cut(s)	301, 556, 832, 1495, 1753, 1999
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	5 cut(s)	1194, 1195, 1241, 1884, 2221
BseMI	GCAATG	2 cut(s)	209, 866
BseMII	CTCAG	4 cut(s)	585, 630, 1302, 1980
BseNI	ACTGG	6 cut(s)	262, 623, 1482, 1608, 1861, 2258
BseRI	GAGGAG	2 cut(s)	88, 1163
BseSI	GKGCMC	2 cut(s)	1452, 1999
BseYI	CCCAGC	2 cut(s)	1280, 2055
BsgI	GTGCAG	2 cut(s)	190, 999
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	2 cut(s)	187, 1576
BshFI	GGCC	7 cut(s)	349, 502, 1570, 1653, 2213, 2257, 2354
BshNI	GGYRCC	1 cut(s)	1285
BsiEI	CGRYCG	2 cut(s)	187, 1576
BsiHKAI	GWGCWC	6 cut(s)	164, 586, 600, 715, 1234, 1345
BsiSI	CCGG	5 cut(s)	218, 336, 569, 1572, 2175
BslFI	GGGAC	2 cut(s)	1620, 1655
BslI	CCNNNNNNNGG	5 cut(s)	1194, 1195, 1241, 1884, 2221
BsmAI	GTCTC	4 cut(s)	151, 934, 2069, 2408
BsmBI	CGTCTC	1 cut(s)	2408
BsmFI	GGGAC	2 cut(s)	1620, 1655
BsnI	GGCC	7 cut(s)	349, 502, 1570, 1653, 2213, 2257, 2354
Bsp1286I	GDGCHC	8 cut(s)	164, 586, 600, 715, 1234, 1345, 1452, 1999
Bsp1720I	GCTNAGC	1 cut(s)	594
BspANI	GGCC	7 cut(s)	349, 502, 1570, 1653, 2213, 2257, 2354
BspCNI	CTCAG	4 cut(s)	586, 631, 1303, 1981
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	7 cut(s)	340, 350, 558, 567, 1287, 1386, 1426
BspQI	GCTCTTC	2 cut(s)	993, 2481
BspT107I	GGYRCC	1 cut(s)	1285
BsrDI	GCAATG	2 cut(s)	209, 866
BsrI	ACTGG	6 cut(s)	262, 623, 1482, 1608, 1861, 2258
BssECI	CCNNGG	6 cut(s)	99, 561, 1192, 1687, 1765, 1878
BssNI	GRCGYC	1 cut(s)	1683
BssSI	CACGAG	1 cut(s)	2028
BssT1I	CCWWGG	3 cut(s)	561, 1192, 1878
Bst2BI	CACGAG	1 cut(s)	2028
Bst2UI	CCWGG	4 cut(s)	846, 1236, 1567, 1776
Bst4CI	ACNGT	4 cut(s)	611, 686, 789, 949
Bst6I	CTCTTC	9 cut(s)	154, 410, 466, 783, 993, 1923, 2125, 2136, 2481
BstACI	GRCGYC	1 cut(s)	1683
BstAPI	GCANNNNNTGC	3 cut(s)	868, 1796, 1976
BstBAI	YACGTR	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	810, 2211
BstDEI	CTNAG	9 cut(s)	273, 594, 639, 1179, 1260, 1311, 1374, 1989, 2192
BstDSI	CCRYGG	1 cut(s)	1765
BstEII	GGTNACC	1 cut(s)	2050
BstF5I	GGATG	6 cut(s)	301, 556, 832, 1495, 1753, 1999
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	657
BstMAI	GTCTC	4 cut(s)	151, 934, 2069, 2408
BstMCI	CGRYCG	2 cut(s)	187, 1576
BstNI	CCWGG	4 cut(s)	846, 1236, 1567, 1776
BstNSI	RCATGY	1 cut(s)	2387
BstPI	GGTNACC	1 cut(s)	2050
BstSCI	CCNGG	7 cut(s)	216, 567, 844, 1234, 1565, 1570, 1774
BstSFI	CTRYAG	3 cut(s)	732, 1297, 2202
BstSLI	GKGCMC	2 cut(s)	1452, 1999
BstUI	CGCG	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	1466
BstX2I	RGATCY	6 cut(s)	556, 1307, 1424, 1792, 2033, 2506
BstXI	CCANNNNNNTGG	1 cut(s)	1961
BstYI	RGATCY	6 cut(s)	556, 1307, 1424, 1792, 2033, 2506
BsuRI	GGCC	7 cut(s)	349, 502, 1570, 1653, 2213, 2257, 2354
BtgI	CCRYGG	1 cut(s)	1765
BtgZI	GCGATG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	195
BtsCI	GGATG	6 cut(s)	301, 556, 832, 1495, 1753, 1999
BtsI	GCAGTG	1 cut(s)	1944
BtsIMutI	CAGTG	5 cut(s)	723, 785, 1598, 1601, 1944
Cac8I	GCNNGC	2 cut(s)	810, 2211
CaiI	CAGNNNCTG	1 cut(s)	1310
CfoI	GCGC	1 cut(s)	657
Cfr13I	GGNCC	7 cut(s)	348, 565, 1569, 1651, 2212, 2255, 2353
CseI	GACGC	4 cut(s)	1424, 1471, 2255, 2425
Csp6I	GTAC	2 cut(s)	997, 1162
CviAII	CATG	6 cut(s)	1955, 1967, 2122, 2264, 2369, 2384
CviQI	GTAC	2 cut(s)	997, 1162
DdeI	CTNAG	9 cut(s)	273, 594, 639, 1179, 1260, 1311, 1374, 1989, 2192
DraI	TTTAAA	1 cut(s)	1108
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	9 cut(s)	154, 410, 466, 783, 993, 1923, 2125, 2136, 2481
EarI	CTCTTC	9 cut(s)	154, 410, 466, 783, 993, 1923, 2125, 2136, 2481
EciI	GGCGGA	1 cut(s)	563
Ecl136II	GAGCTC	3 cut(s)	162, 598, 713
Eco130I	CCWWGG	3 cut(s)	561, 1192, 1878
Eco24I	GRGCYC	3 cut(s)	164, 600, 715
Eco47I	GGWCC	1 cut(s)	565
Eco47III	AGCGCT	1 cut(s)	656
Eco53kI	GAGCTC	3 cut(s)	162, 598, 713
Eco57I	CTGAAG	2 cut(s)	1011, 1947
Eco72I	CACGTG	1 cut(s)	874
Eco91I	GGTNACC	1 cut(s)	2050
EcoICRI	GAGCTC	3 cut(s)	162, 598, 713
EcoO109I	RGGNCCY	3 cut(s)	348, 565, 2353
EcoO65I	GGTNACC	1 cut(s)	2050
EcoRI	GAATTC	1 cut(s)	1215
EcoRII	CCWGG	4 cut(s)	844, 1234, 1565, 1774
EcoT14I	CCWWGG	3 cut(s)	561, 1192, 1878
EcoT22I	ATGCAT	1 cut(s)	2389
EcoT38I	GRGCYC	3 cut(s)	164, 600, 715
ErhI	CCWWGG	3 cut(s)	561, 1192, 1878
Esp3I	CGTCTC	1 cut(s)	2408
FaeI	CATG	6 cut(s)	1958, 1970, 2125, 2267, 2372, 2387
FalI	AAGNNNNNCTT	2 cut(s)	38, 2493
FaqI	GGGAC	2 cut(s)	1620, 1655
FatI	CATG	6 cut(s)	1954, 1966, 2121, 2263, 2368, 2383
FauI	CCCGC	2 cut(s)	302, 1196
FauNDI	CATATG	1 cut(s)	2338
FblI	GTMKAC	2 cut(s)	255, 681
FokI	GGATG	6 cut(s)	308, 563, 839, 1502, 1760, 1986
FriOI	GRGCYC	3 cut(s)	164, 600, 715
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	656
GsaI	CCCAGC	2 cut(s)	1284, 2059
GsuI	CTGGAG	1 cut(s)	1293
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	7 cut(s)	349, 502, 1570, 1653, 2213, 2257, 2354
HapII	CCGG	5 cut(s)	218, 336, 569, 1572, 2175
HgaI	GACGC	4 cut(s)	1424, 1471, 2255, 2425
HhaI	GCGC	1 cut(s)	657
Hin1I	GRCGYC	1 cut(s)	1683
Hin1II	CATG	6 cut(s)	1958, 1970, 2125, 2267, 2372, 2387
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HincII	GTYRAC	3 cut(s)	256, 1837, 1854
HindII	GTYRAC	3 cut(s)	256, 1837, 1854
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	5 cut(s)	218, 336, 569, 1572, 2175
HphI	GGTGA	3 cut(s)	422, 583, 2044
Hpy166II	GTNNAC	7 cut(s)	256, 682, 945, 1185, 1837, 1854, 1862
Hpy8I	GTNNAC	7 cut(s)	256, 682, 945, 1185, 1837, 1854, 1862
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	9 cut(s)	367, 780, 792, 1439, 1664, 2073, 2368, 2456, 2495
HpyCH4III	ACNGT	4 cut(s)	611, 686, 789, 949
HpyCH4IV	ACGT	4 cut(s)	194, 675, 873, 1683
HpyF3I	CTNAG	9 cut(s)	273, 594, 639, 1179, 1260, 1311, 1374, 1989, 2192
HpySE526I	ACGT	4 cut(s)	194, 675, 873, 1683
Hsp92I	GRCGYC	1 cut(s)	1683
Hsp92II	CATG	6 cut(s)	1958, 1970, 2125, 2267, 2372, 2387
HspAI	GCGC	1 cut(s)	655
LguI	GCTCTTC	2 cut(s)	993, 2481
LmnI	GCTCC	8 cut(s)	101, 338, 376, 1005, 1229, 1390, 2064, 2177
LweI	GCATC	9 cut(s)	541, 718, 821, 1120, 1401, 1477, 1597, 1738, 2296
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	4 cut(s)	194, 675, 873, 1683
MaeIII	GTNAC	7 cut(s)	440, 625, 721, 2050, 2167, 2243, 2379
MfeI	CAATTG	2 cut(s)	1971, 2250
MflI	RGATCY	6 cut(s)	556, 1307, 1424, 1792, 2033, 2506
MhlI	GDGCHC	8 cut(s)	164, 586, 600, 715, 1234, 1345, 1452, 1999
MlyI	GAGTC	3 cut(s)	328, 650, 1940
MmeI	TCCRAC	7 cut(s)	71, 167, 246, 507, 937, 1312, 1402
Mph1103I	ATGCAT	1 cut(s)	2389
MroXI	GAANNNNTTC	3 cut(s)	744, 769, 1080
MseI	TTAA	8 cut(s)	30, 303, 1098, 1107, 1782, 1809, 2327, 2436
MslI	CAYNNNNRTG	1 cut(s)	1959
MspA1I	CMGCKG	2 cut(s)	183, 983
MspI	CCGG	5 cut(s)	218, 336, 569, 1572, 2175
MspR9I	CCNGG	7 cut(s)	218, 569, 846, 1236, 1567, 1572, 1776
MunI	CAATTG	2 cut(s)	1971, 2250
MvaI	CCWGG	4 cut(s)	846, 1236, 1567, 1776
MvnI	CGCG	1 cut(s)	227
NciI	CCSGG	3 cut(s)	218, 569, 1572
NdeI	CATATG	1 cut(s)	2338
NlaIII	CATG	6 cut(s)	1958, 1970, 2125, 2267, 2372, 2387
NlaIV	GGNNCC	7 cut(s)	340, 350, 558, 567, 1287, 1386, 1426
NmeAIII	GCCGAG	4 cut(s)	80, 183, 367, 1324
NmuCI	GTSAC	5 cut(s)	440, 721, 2050, 2167, 2243
NsiI	ATGCAT	1 cut(s)	2389
NspI	RCATGY	1 cut(s)	2387
PciSI	GCTCTTC	2 cut(s)	993, 2481
PdmI	GAANNNNTTC	3 cut(s)	744, 769, 1080
PfeI	GAWTC	8 cut(s)	177, 199, 242, 269, 284, 758, 1081, 1578
PflMI	CCANNNNNTGG	1 cut(s)	2221
PleI	GAGTC	3 cut(s)	327, 649, 1939
PmaCI	CACGTG	1 cut(s)	874
PmlI	CACGTG	1 cut(s)	874
PpsI	GAGTC	3 cut(s)	327, 649, 1939
Ppu21I	YACGTR	1 cut(s)	874
PpuMI	RGGWCCY	1 cut(s)	565
Psp124BI	GAGCTC	3 cut(s)	164, 600, 715
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	4 cut(s)	844, 1234, 1565, 1774
PspCI	CACGTG	1 cut(s)	874
PspEI	GGTNACC	1 cut(s)	2050
PspFI	CCCAGC	2 cut(s)	1280, 2055
PspGI	CCWGG	4 cut(s)	844, 1234, 1565, 1774
PspN4I	GGNNCC	7 cut(s)	340, 350, 558, 567, 1287, 1386, 1426
PspPI	GGNCC	7 cut(s)	348, 565, 1569, 1651, 2212, 2255, 2353
PspPPI	RGGWCCY	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	1310
PsuI	RGATCY	6 cut(s)	556, 1307, 1424, 1792, 2033, 2506
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	2 cut(s)	998, 1163
RsaNI	GTAC	2 cut(s)	997, 1162
RseI	CAYNNNNRTG	1 cut(s)	1959
SacI	GAGCTC	3 cut(s)	164, 600, 715
SalI	GTCGAC	1 cut(s)	254
SapI	GCTCTTC	2 cut(s)	993, 2481
SaqAI	TTAA	8 cut(s)	30, 303, 1098, 1107, 1782, 1809, 2327, 2436
Sau96I	GGNCC	7 cut(s)	348, 565, 1569, 1651, 2212, 2255, 2353
SchI	GAGTC	3 cut(s)	328, 650, 1940
ScrFI	CCNGG	7 cut(s)	218, 569, 846, 1236, 1567, 1572, 1776
SduI	GDGCHC	8 cut(s)	164, 586, 600, 715, 1234, 1345, 1452, 1999
SfaNI	GCATC	9 cut(s)	541, 718, 821, 1120, 1401, 1477, 1597, 1738, 2296
SfcI	CTRYAG	3 cut(s)	732, 1297, 2202
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	1959
SmlI	CTYRAG	5 cut(s)	163, 365, 918, 1039, 1145
SmoI	CTYRAG	5 cut(s)	163, 365, 918, 1039, 1145
SspI	AATATT	1 cut(s)	1813
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	3 cut(s)	164, 600, 715
StyD4I	CCNGG	7 cut(s)	216, 567, 844, 1234, 1565, 1570, 1774
StyI	CCWWGG	3 cut(s)	561, 1192, 1878
TaaI	ACNGT	4 cut(s)	611, 686, 789, 949
TaiI	ACGT	4 cut(s)	197, 678, 876, 1686
TaqI	TCGA	7 cut(s)	197, 245, 255, 287, 709, 1576, 1581
TatI	WGTACW	1 cut(s)	996
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	8 cut(s)	177, 199, 242, 269, 284, 758, 1081, 1578
Tru1I	TTAA	8 cut(s)	30, 303, 1098, 1107, 1782, 1809, 2327, 2436
Tru9I	TTAA	8 cut(s)	30, 303, 1098, 1107, 1782, 1809, 2327, 2436
TscAI	CASTG	5 cut(s)	730, 792, 1598, 1608, 1951
TseFI	GTSAC	5 cut(s)	440, 721, 2050, 2167, 2243
Tsp45I	GTSAC	5 cut(s)	440, 721, 2050, 2167, 2243
TspDTI	ATGAA	9 cut(s)	141, 312, 771, 843, 1390, 1422, 1909, 1971, 2252
TspGWI	ACGGA	2 cut(s)	459, 1921
TspRI	CASTG	5 cut(s)	730, 792, 1598, 1608, 1951
Van91I	CCANNNNNTGG	1 cut(s)	2221
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	3 cut(s)	169, 1215, 1871
XceI	RCATGY	1 cut(s)	2387
XmiI	GTMKAC	2 cut(s)	255, 681
XmnI	GAANNNNTTC	3 cut(s)	744, 769, 1080
XspI	CTAG	1 cut(s)	633
ZraI	GACGTC	1 cut(s)	1684
Zsp2I	ATGCAT	1 cut(s)	2389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.