Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015112

Physical Location & Seq

Genomic Coordinates Forward (+)

39064187 .. 39070778

Gene Structure 6592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGGATCCCTGAAGAGAAAATCGGAGGAAGACGACTCTGCAGCAGCTCCACCCAAAGTAGCCAAGTCGGAGAACAAGAACACTCTTGAAATCGTCAACAATGAACAGATGCTCTGCGTGCACGACGTGTCGTACCCTGAGGGTTACGTTCCTCCGCCGCCGCCGCCGCCTTCTTCTTCCGAACCCGCCAAGAAATTCCCCTTCACTCTCGACCCTTTTCAGTCCGAAGCCATCAAATGCATTGAAAATGGGGAGTCCGTCATGGTGTCTGCTCACACATCTGCTGGAAAAACTGTTGTTGCGTCGTACGCGATTGCGTTGTGTTTGCGTCATAAGCAACGTGTGATATACACCGCACCCATCAAAGCTCTCAGCAACCAAAAGTACAGAGAGTTCAAAGAGGAGTTTTCGGATGTTGGGTTGATGACTGGAGATGTAACAATCGACCCCAACGCTTCGTGCTTGGTGATGACCACGGAAATCTGGCGGAGCATGCAGTACAAAGGATCAGAGGTGACGCGAGAGGTGGCGTGGATAATCTTTGATGAGGTGCATTACATGCGGGATCTCGAGAGAGGTGTGGTGTGGGAAGAGAGCATTGTTATGGCTCCAAAGAATGCTCGCTTTGTCTTCCTCTCAGCAACCGTGCCCAATGCAAAGGAATTTGCTGATTGGCTCGCAAAGGTTCATCGACAGCCTTGCCACATTGTCTATACGGATTATAGGCCCACTCCTCTTCAGCATTATATTTTCCCCTCCGGAGGGGATGGTCTGTACTTGGTAGTTGATGAAAAGGGAAAGTTTCGTGAGGACAGCTTTCAACAAGCTCTTAATGCGCTTGCTCCTGCCTCCGACGCTGCTAAGAAGAAGGAAAATGGCAAGTGGCAGAAGGGTCTGGTCATCGGCAAGGCCGCTGAAGAAACCGATATCTTCAAGATGGTGAAAATGATAATTCAGCGTCAGTATGACCCTGTCATACTTTTCAGCTTTAGCAAAAGGGAATGTGAATTACTTGCAATGCAGATGGCAAAGTTGGACCTAAATGGGGACAGTGAGAAAGCAAACATAGAAACCATCTTCTGGAGTGCTATGGATATGCTTTCAGACGATGATAAGAAGTTACCCCAGAGTGTTACTACTATGTTACCCCTTTTAATGCGTGGAATAGGTGTGCATCATTCTGGTTTGATTCCCATTCTAAAGGAAGTGATTGAGATATTATTTCAGGAAGGTCTTATCAAGTGTTTATTTGCAACAGAGACCTTCAGCATAGGACTGAACATGCCTGCGAAAACTGTTGTATTTACCAATGTCCGGAAATTTGATGGTAATAAGTTCAGATGGATAACCAGTGGTGAGTATATACAAATGAGTGGTCGTGCTGGTCGCCGGGGTATTGATAAACGTGGGATATGCATACTTATGGTAGATGAGAAGCTAGAGCCATCTACTGCCAAAATGATGCTTAAAGGAAATGCTGATAGTTTGAACAGTGCCTTTCATTTAAGCTACAACATGCTTCTGAATCAATTGCGCTCTGAAGATGGTAATCCAGAAAATTTACTTCGTAACTCATTCTATCAGTTCCAAGCTGATCGTGCCATTCCCAATCTGGAGAAACAAACAAAGGAGCTTGAGCAAGAGAGGGATTCAATTATAATTGAAGAAGAAGATAGTGTAAGGAATTATTACAATCTAGTACAGCAATACAAGAGTTTAAAGCAGGATCTTCGTGAGATTGTGATTTCTCCAAAGTACTGCTTACCATTTCTGAAACCTGGTAGGCTTGTGTCAATCCAATGCACCAAGAGTGATGAAGCTTCCGCTTCTTTTTCTACCGAGGACCATGTCACATGGGGTGTTATACTTAATTTTCAACGAGTGAAAACTGTTTCTGAAGATGATGCAGTTAAGAGACCTGAAGATTCAAACTACACTGTGGATGTTTTGACTAGGTGTCTGGTCGACACAAATGGAGTTGCAAAAAAAACACTAAAAATTGTTCCTTTGAAAGAACTGGGAGAACCTGTTGTTGTTTCGATTTCCATCTCTCAGATTAATAGCATGAGTCGACTTTGTATGGTCATACCAAATGATCTTTTGTCATTACAAGCTCGAGAAAACACACTGAAGAAAGTTCTTGAAACTCTTTCAAGATTTGGAGAGAAGATTCCTCTTTTAGATCCTGAAGAAGACATGAAGATTCAAAGTAGTTCGTACAAAAAAGTGGCTCGTAGGATTGAGGCTTTAGAGAACCTGTTTGACAGGCATGAAATTGCAAAATCACCACTAATTGAGCAAAAGCTCAAGGTTTTTCACATGAAGCAGGAATTGGCAGCGAAGATCAAGTCAATTAAGAAAACAATGCGCTCTTCGACTGCGTTGGCTTTTAAAGATGAACTTAAGGCACGAAAACGGGTTCTTCGGAGGCTAGGATATGTTACTAGCGATGATGTTGTGCAGTTGAAGGGTAAGGTTGCTTGTGAAATCAGTAGTGCAGATGAGTTGACCCTCACAGAGCTCATGTTCAATGGCGTTTTCAAGGACATAAAGGTAGAAGAGATGGTATCTCTTCTCTCATGTTTTGTTTGGCGGGAAAAACTAAAAGATGCTACAAAACCAAGGGAAGAGCTTGACCTGCTCTTCTTGCAATTACAAGAAACTGCTCGGAGGGTGGCTGAAGTTCAGCTTGAGTGCAAGGTTGAAATTGACATCGATAGCTTTGTGAGTTCATTTCGGCCTGATATTATGGAGGCTGCATATGCTTGGGCAAAAGGGTCAAAATTTTATGAGATAATGTCAGTTACAGGGGTTTTCGAGGGTAGCTTAATCAGGGCAATCAGGAGACTAGAGGAAGTTCTTCAGCAACTTATACACGCAGCCAATTCTATTGGAGAAACTGATCTTGAATCAAAATTTGAGGAGGCTGTTTCAAAAATCAAGAGAGACATTGTCTTTGCAGCTTCCCTATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

992

Amino Acids

112.44

Weight (kDa)

6.38

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	69 - 216	4.2e-09	Type III restriction enzyme, res subunit
DEAD	PF00270	72 - 221	1.2e-26	DEAD/DEAH box helicase
DEXQc_Suv3	PF22527	93 - 203	2.4e-07	DEXQ-box helicase domain of Suv3
MTR4-like_stalk	PF21408	519 - 581	1.7e-20	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	583 - 790	4.4e-49	Mtr4-like, beta-barrel domain
DSHCT	PF08148	817 - 987	6.8e-55	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59760
fragaria_vesca	FvH4_5g28050 FvH4_5g28050 FvH4_5g28050
malus_domestica	MD08G1247600.v1.1
prunus_persica	Prupe.6G113400_v2.0.a1
pyrus_communis	pycom08g21450
rosa_chinensis	RchiOBHm_Chr7g0220221
rosa_laevigata	RLG00000002249
rosa_multiflora	Rmu_sc0001136.1_g000019
rosa_roxburghii	Rroxscaffold_3G00239700
rosa_rugosa	Rorug07G0191200
rosa_samantha	Rh7AG333300 Rh7CG350900 Rh7DG329600
rosa_wichuraiana	Rw7G028110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1658
Acc36I	ACCTGC	1 cut(s)	2646
AccB7I	CCANNNNNTGG	1 cut(s)	1080
AccI	GTMKAC	2 cut(s)	1965, 2071
AccII	CGCG	2 cut(s)	311, 520
AccIII	TCCGGA	2 cut(s)	758, 1314
AclWI	GGATC	5 cut(s)	13, 514, 573, 1734, 2177
AcsI	RAATTY	6 cut(s)	194, 662, 1319, 1558, 2783, 2915
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	8 cut(s)	134, 308, 386, 500, 776, 1701, 1757, 2219
AfiI	CCNNNNNNNGG	5 cut(s)	761, 762, 1045, 1080, 1314
AflII	CTTAAG	1 cut(s)	2402
AflIII	ACRYGT	2 cut(s)	126, 340
AhdI	GACNNNNNGTC	1 cut(s)	1956
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	1777
AjuI	GAANNNNNNNTTGG	2 cut(s)	2315, 2347
Alw21I	GWGCWC	2 cut(s)	123, 2523
Alw26I	GTCTC	4 cut(s)	1253, 1909, 2839, 2940
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	5 cut(s)	13, 514, 573, 1734, 2177
Ama87I	CYCGRG	2 cut(s)	569, 2115
Aor13HI	TCCGGA	2 cut(s)	758, 1314
AoxI	GGCC	3 cut(s)	725, 909, 2738
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	7 cut(s)	41, 44, 857, 2336, 2756, 2879, 2960
ApoI	RAATTY	6 cut(s)	194, 662, 1319, 1558, 2783, 2915
ArsI	GACNNNNNNTTYG	6 cut(s)	1360, 1392, 2333, 2365, 2939, 2971
AseI	ATTAAT	1 cut(s)	2058
Asp700I	GAANNNNTTC	1 cut(s)	2859
AspLEI	GCGC	3 cut(s)	838, 1536, 2370
AspS9I	GGNCC	3 cut(s)	726, 1036, 1843
AsuC2I	CCSGG	1 cut(s)	1391
AsuHPI	GGTGA	5 cut(s)	478, 526, 952, 1367, 2277
AvaI	CYCGRG	2 cut(s)	569, 2115
AvaII	GGWCC	2 cut(s)	1036, 1843
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	2 cut(s)	123, 651
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	2523
BbsI	GAAGAC	3 cut(s)	36, 622, 2199
Bbv12I	GWGCWC	2 cut(s)	123, 2523
BbvI	GCAGC	7 cut(s)	53, 56, 844, 2348, 2743, 2891, 2972
BcgI	CGANNNNNNTGC	4 cut(s)	681, 715, 1712, 1746
BciT130I	CCWGG	1 cut(s)	1779
BcnI	CCSGG	1 cut(s)	1391
BcoDI	GTCTC	4 cut(s)	1253, 1909, 2839, 2940
BfaI	CTAG	6 cut(s)	1439, 1697, 1953, 2432, 2445, 2849
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	2402
BfuAI	ACCTGC	1 cut(s)	2646
BmcAI	AGTACT	1 cut(s)	1757
Bme1390I	CCNGG	2 cut(s)	1391, 1779
Bme18I	GGWCC	2 cut(s)	1036, 1843
BmeRI	GACNNNNNGTC	1 cut(s)	1956
BmeT110I	CYCGRG	2 cut(s)	569, 2115
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	726, 1036, 1843
BmiI	GGNNCC	2 cut(s)	7, 609
BmrFI	CCNGG	2 cut(s)	1391, 1779
BmrI	ACTGGG	1 cut(s)	2027
BmsI	GCATC	5 cut(s)	99, 1183, 1452, 1894, 2599
BmuI	ACTGGG	1 cut(s)	2027
BpiI	GAAGAC	3 cut(s)	36, 622, 2199
BpmI	CTGGAG	3 cut(s)	450, 1102, 1634
BpuEI	CTTGAG	3 cut(s)	1655, 2291, 2711
BpuMI	CCSGG	1 cut(s)	1391
Bsa29I	ATCGAT	1 cut(s)	2715
BsaBI	GATNNNNATC	2 cut(s)	1548, 2045
BsaI	GGTCTC	2 cut(s)	1253, 1909
BsaJI	CCNNGG	4 cut(s)	474, 1390, 1839, 2621
BsaWI	WCCGGW	2 cut(s)	758, 1314
BsaXI	ACNNNNNCTCC	2 cut(s)	2013, 2043
Bsc4I	CCNNNNNNNGG	5 cut(s)	761, 762, 1045, 1080, 1314
Bse1I	ACTGG	3 cut(s)	433, 1350, 2022
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	1023
Bse8I	GATNNNNATC	2 cut(s)	1548, 2045
BseAI	TCCGGA	2 cut(s)	758, 1314
BseBI	CCWGG	1 cut(s)	1779
BseCI	ATCGAT	1 cut(s)	2715
BseDI	CCNNGG	4 cut(s)	474, 1390, 1839, 2621
BseGI	GGATG	3 cut(s)	418, 772, 1948
BseJI	GATNNNNATC	2 cut(s)	1548, 2045
BseLI	CCNNNNNNNGG	5 cut(s)	761, 762, 1045, 1080, 1314
BseMI	GCAATG	1 cut(s)	1023
BseMII	CTCAG	4 cut(s)	129, 385, 651, 2066
BseNI	ACTGG	3 cut(s)	433, 1350, 2022
BseRI	GAGGAG	3 cut(s)	416, 723, 2936
BseSI	GKGCMC	2 cut(s)	123, 651
BseXI	GCAGC	7 cut(s)	53, 56, 844, 2348, 2743, 2891, 2972
BsgI	GTGCAG	2 cut(s)	2480, 2517
Bsh1236I	CGCG	2 cut(s)	311, 520
BshFI	GGCC	3 cut(s)	727, 911, 2740
BshVI	ATCGAT	1 cut(s)	2715
BsiHKAI	GWGCWC	2 cut(s)	123, 2523
BsiHKCI	CYCGRG	2 cut(s)	569, 2115
BsiSI	CCGG	3 cut(s)	759, 1315, 1390
BsiWI	CGTACG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	1061
BslI	CCNNNNNNNGG	5 cut(s)	761, 762, 1045, 1080, 1314
BsmAI	GTCTC	4 cut(s)	1253, 1909, 2839, 2940
BsmFI	GGGAC	1 cut(s)	1061
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	727, 911, 2740
Bso31I	GGTCTC	2 cut(s)	1253, 1909
BsoBI	CYCGRG	2 cut(s)	569, 2115
Bsp1286I	GDGCHC	3 cut(s)	123, 651, 2523
Bsp13I	TCCGGA	2 cut(s)	758, 1314
Bsp143I	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
BspANI	GGCC	3 cut(s)	727, 911, 2740
BspCNI	CTCAG	4 cut(s)	130, 384, 650, 2065
BspDI	ATCGAT	1 cut(s)	2715
BspEI	TCCGGA	2 cut(s)	758, 1314
BspFNI	CGCG	2 cut(s)	311, 520
BspLI	GGNNCC	2 cut(s)	7, 609
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	2646
BspPI	GGATC	5 cut(s)	13, 514, 573, 1734, 2177
BspQI	GCTCTTC	3 cut(s)	2377, 2622, 2648
BspTI	CTTAAG	1 cut(s)	2402
BspTNI	GGTCTC	2 cut(s)	1253, 1909
BsrDI	GCAATG	1 cut(s)	1023
BsrI	ACTGG	3 cut(s)	433, 1350, 2022
BssECI	CCNNGG	4 cut(s)	474, 1390, 1839, 2621
BssMI	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
BssT1I	CCWWGG	1 cut(s)	2621
Bst2UI	CCWGG	1 cut(s)	1779
Bst4CI	ACNGT	7 cut(s)	295, 646, 1052, 1297, 1493, 1891, 1939
Bst6I	CTCTTC	8 cut(s)	8, 585, 741, 2377, 2553, 2577, 2622, 2648
BstAFI	CTTAAG	1 cut(s)	2402
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	6 cut(s)	119, 494, 622, 678, 840, 1287
BstDEI	CTNAG	5 cut(s)	138, 371, 637, 861, 2052
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	418, 772, 1948
BstFNI	CGCG	2 cut(s)	311, 520
BstHHI	GCGC	3 cut(s)	838, 1536, 2370
BstKTI	GATC	9 cut(s)	8, 509, 568, 1597, 1729, 2098, 2185, 2346, 2905
BstMAI	GTCTC	4 cut(s)	1253, 1909, 2839, 2940
BstMBI	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
BstNI	CCWGG	1 cut(s)	1779
BstNSI	RCATGY	4 cut(s)	496, 562, 1285, 1519
BstSCI	CCNGG	2 cut(s)	1389, 1777
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	123, 651
BstUI	CGCG	2 cut(s)	311, 520
BstV1I	GCAGC	7 cut(s)	53, 56, 844, 2348, 2743, 2891, 2972
BstV2I	GAAGAC	3 cut(s)	36, 622, 2199
BstX2I	RGATCY	4 cut(s)	5, 565, 1726, 2182
BstYI	RGATCY	4 cut(s)	5, 565, 1726, 2182
Bsu15I	ATCGAT	1 cut(s)	2715
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	727, 911, 2740
BsuTUI	ATCGAT	1 cut(s)	2715
BtgI	CCRYGG	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	2463
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	418, 772, 1948
BtsIMutI	CAGTG	5 cut(s)	1057, 1357, 1498, 1935, 2126
BveI	ACCTGC	1 cut(s)	2646
Cac8I	GCNNGC	6 cut(s)	119, 494, 622, 678, 840, 1287
CfoI	GCGC	3 cut(s)	838, 1536, 2370
Cfr13I	GGNCC	3 cut(s)	726, 1036, 1843
ClaI	ATCGAT	1 cut(s)	2715
CseI	GACGC	5 cut(s)	291, 317, 526, 863, 947
CsiI	ACCWGGT	1 cut(s)	1777
Csp6I	GTAC	8 cut(s)	133, 307, 385, 499, 775, 1700, 1756, 2218
CviQI	GTAC	8 cut(s)	133, 307, 385, 499, 775, 1700, 1756, 2218
DdeI	CTNAG	5 cut(s)	138, 371, 637, 861, 2052
DpnI	GATC	9 cut(s)	7, 508, 567, 1596, 1728, 2097, 2184, 2345, 2904
DpnII	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
DraI	TTTAAA	2 cut(s)	1719, 2392
DraIII	CACNNNGTG	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	1956
Eam1104I	CTCTTC	8 cut(s)	8, 585, 741, 2377, 2553, 2577, 2622, 2648
Eam1105I	GACNNNNNGTC	1 cut(s)	1956
EarI	CTCTTC	8 cut(s)	8, 585, 741, 2377, 2553, 2577, 2622, 2648
EciI	GGCGGA	2 cut(s)	144, 502
Ecl136II	GAGCTC	1 cut(s)	2521
Eco130I	CCWWGG	1 cut(s)	2621
Eco24I	GRGCYC	1 cut(s)	2523
Eco31I	GGTCTC	2 cut(s)	1253, 1909
Eco32I	GATATC	1 cut(s)	928
Eco47I	GGWCC	2 cut(s)	1036, 1843
Eco53kI	GAGCTC	1 cut(s)	2521
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	2 cut(s)	569, 2115
EcoICRI	GAGCTC	1 cut(s)	2521
EcoRII	CCWGG	1 cut(s)	1777
EcoRV	GATATC	1 cut(s)	928
EcoT14I	CCWWGG	1 cut(s)	2621
EcoT22I	ATGCAT	2 cut(s)	242, 1418
EcoT38I	GRGCYC	1 cut(s)	2523
ErhI	CCWWGG	1 cut(s)	2621
FalI	AAGNNNNNCTT	6 cut(s)	1745, 1777, 2385, 2417, 2673, 2705
FaqI	GGGAC	1 cut(s)	1061
FauI	CCCGC	3 cut(s)	193, 555, 2586
FauNDI	CATATG	1 cut(s)	2761
FblI	GTMKAC	2 cut(s)	1965, 2071
FokI	GGATG	3 cut(s)	425, 779, 1955
FriOI	GRGCYC	1 cut(s)	2523
FspBI	CTAG	6 cut(s)	1439, 1697, 1953, 2432, 2445, 2849
GlaI	GCGC	3 cut(s)	837, 1535, 2369
GsuI	CTGGAG	3 cut(s)	450, 1102, 1634
HaeIII	GGCC	3 cut(s)	727, 911, 2740
HapII	CCGG	3 cut(s)	759, 1315, 1390
HgaI	GACGC	5 cut(s)	291, 317, 526, 863, 947
HhaI	GCGC	3 cut(s)	838, 1536, 2370
Hin6I	GCGC	3 cut(s)	836, 1534, 2368
HinP1I	GCGC	3 cut(s)	836, 1534, 2368
HincII	GTYRAC	4 cut(s)	97, 1966, 2072, 2508
HindII	GTYRAC	4 cut(s)	97, 1966, 2072, 2508
HindIII	AAGCTT	1 cut(s)	1818
HpaII	CCGG	3 cut(s)	759, 1315, 1390
HphI	GGTGA	5 cut(s)	478, 526, 952, 1367, 2277
Hpy166II	GTNNAC	5 cut(s)	97, 121, 1966, 2072, 2508
Hpy8I	GTNNAC	5 cut(s)	97, 121, 1966, 2072, 2508
Hpy99I	CGWCG	3 cut(s)	128, 307, 857
HpyAV	CCTTC	7 cut(s)	180, 211, 862, 883, 1223, 1273, 2461
HpyCH4III	ACNGT	7 cut(s)	295, 646, 1052, 1297, 1493, 1891, 1939
HpyCH4IV	ACGT	4 cut(s)	126, 147, 340, 1405
HpyF3I	CTNAG	5 cut(s)	138, 371, 637, 861, 2052
HpySE526I	ACGT	4 cut(s)	126, 147, 340, 1405
HspAI	GCGC	3 cut(s)	836, 1534, 2368
Kpn2I	TCCGGA	2 cut(s)	758, 1314
Kzo9I	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
LguI	GCTCTTC	3 cut(s)	2377, 2622, 2648
LmnI	GCTCC	5 cut(s)	52, 489, 613, 847, 1630
Lsp1109I	GCAGC	7 cut(s)	53, 56, 844, 2348, 2743, 2891, 2972
LweI	GCATC	5 cut(s)	99, 1183, 1452, 1894, 2599
MabI	ACCWGGT	1 cut(s)	1777
MaeI	CTAG	6 cut(s)	1439, 1697, 1953, 2432, 2445, 2849
MaeII	ACGT	4 cut(s)	126, 147, 340, 1405
MalI	GATC	9 cut(s)	7, 508, 567, 1596, 1728, 2097, 2184, 2345, 2904
MboI	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
MfeI	CAATTG	1 cut(s)	1529
MflI	RGATCY	4 cut(s)	5, 565, 1726, 2182
MhlI	GDGCHC	3 cut(s)	123, 651, 2523
MlyI	GAGTC	3 cut(s)	29, 263, 2077
MmeI	TCCRAC	3 cut(s)	48, 876, 1014
Mph1103I	ATGCAT	2 cut(s)	242, 1418
MroI	TCCGGA	2 cut(s)	758, 1314
MroXI	GAANNNNTTC	1 cut(s)	2859
MslI	CAYNNNNRTG	2 cut(s)	602, 1421
MspA1I	CMGCKG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	2402
MspI	CCGG	3 cut(s)	759, 1315, 1390
MspR9I	CCNGG	2 cut(s)	1391, 1779
MunI	CAATTG	1 cut(s)	1529
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	1779
MvnI	CGCG	2 cut(s)	311, 520
NciI	CCSGG	1 cut(s)	1391
NdeI	CATATG	1 cut(s)	2761
NdeII	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
NlaIV	GGNNCC	2 cut(s)	7, 609
NmuCI	GTSAC	2 cut(s)	514, 1849
NsiI	ATGCAT	2 cut(s)	242, 1418
NspI	RCATGY	4 cut(s)	496, 562, 1285, 1519
PaeI	GCATGC	1 cut(s)	496
PaeR7I	CTCGAG	2 cut(s)	569, 2115
PciSI	GCTCTTC	3 cut(s)	2377, 2622, 2648
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	2859
PfeI	GAWTC	7 cut(s)	1189, 1525, 1649, 1925, 2170, 2203, 2909
Pfl23II	CGTACG	1 cut(s)	306
PflFI	GACNNNGTC	3 cut(s)	971, 1847, 2951
PflMI	CCANNNNNTGG	1 cut(s)	1080
PleI	GAGTC	3 cut(s)	29, 262, 2076
PpsI	GAGTC	3 cut(s)	29, 262, 2076
PshBI	ATTAAT	1 cut(s)	2058
PsiI	TTATAA	1 cut(s)	1658
Psp124BI	GAGCTC	1 cut(s)	2523
Psp6I	CCWGG	1 cut(s)	1777
PspGI	CCWGG	1 cut(s)	1777
PspLI	CGTACG	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	7, 609
PspPI	GGNCC	3 cut(s)	726, 1036, 1843
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	4 cut(s)	5, 565, 1726, 2182
PsyI	GACNNNGTC	3 cut(s)	971, 1847, 2951
RsaI	GTAC	8 cut(s)	134, 308, 386, 500, 776, 1701, 1757, 2219
RsaNI	GTAC	8 cut(s)	133, 307, 385, 499, 775, 1700, 1756, 2218
RseI	CAYNNNNRTG	2 cut(s)	602, 1421
SacI	GAGCTC	1 cut(s)	2523
SalI	GTCGAC	2 cut(s)	1964, 2070
SapI	GCTCTTC	3 cut(s)	2377, 2622, 2648
Sau3AI	GATC	9 cut(s)	5, 506, 565, 1594, 1726, 2095, 2182, 2343, 2902
Sau96I	GGNCC	3 cut(s)	726, 1036, 1843
ScaI	AGTACT	1 cut(s)	1757
SchI	GAGTC	3 cut(s)	29, 263, 2077
ScrFI	CCNGG	2 cut(s)	1391, 1779
SduI	GDGCHC	3 cut(s)	123, 651, 2523
SexAI	ACCWGGT	1 cut(s)	1777
SfaNI	GCATC	5 cut(s)	99, 1183, 1452, 1894, 2599
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	2 cut(s)	569, 2115
SinI	GGWCC	2 cut(s)	1036, 1843
SlaI	CTCGAG	2 cut(s)	569, 2115
SmiMI	CAYNNNNRTG	2 cut(s)	602, 1421
SmlI	CTYRAG	6 cut(s)	569, 1634, 2115, 2306, 2402, 2690
SmoI	CTYRAG	6 cut(s)	569, 1634, 2115, 2306, 2402, 2690
SphI	GCATGC	1 cut(s)	496
SspMI	CTAG	6 cut(s)	1439, 1697, 1953, 2432, 2445, 2849
SstI	GAGCTC	1 cut(s)	2523
StyD4I	CCNGG	2 cut(s)	1389, 1777
StyI	CCWWGG	1 cut(s)	2621
TaaI	ACNGT	7 cut(s)	295, 646, 1052, 1297, 1493, 1891, 1939
TaiI	ACGT	4 cut(s)	129, 150, 343, 1408
TatI	WGTACW	5 cut(s)	384, 498, 774, 1699, 1755
TauI	GCSGC	5 cut(s)	160, 163, 166, 169, 914
TfiI	GAWTC	7 cut(s)	1189, 1525, 1649, 1925, 2170, 2203, 2909
TscAI	CASTG	5 cut(s)	1057, 1357, 1498, 1942, 2133
TseFI	GTSAC	2 cut(s)	514, 1849
TseI	GCWGC	7 cut(s)	41, 44, 857, 2336, 2756, 2879, 2960
Tsp45I	GTSAC	2 cut(s)	514, 1849
TspGWI	ACGGA	3 cut(s)	247, 491, 731
TspRI	CASTG	5 cut(s)	1057, 1357, 1498, 1942, 2133
Tth111I	GACNNNGTC	3 cut(s)	971, 1847, 2951
Van91I	CCANNNNNTGG	1 cut(s)	1080
Vha464I	CTTAAG	1 cut(s)	2402
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	1036, 1843
VspI	ATTAAT	1 cut(s)	2058
XapI	RAATTY	6 cut(s)	194, 662, 1319, 1558, 2783, 2915
XceI	RCATGY	4 cut(s)	496, 562, 1285, 1519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1609
XhoI	CTCGAG	2 cut(s)	569, 2115
XmiI	GTMKAC	2 cut(s)	1965, 2071
XmnI	GAANNNNTTC	1 cut(s)	2859
XspI	CTAG	6 cut(s)	1439, 1697, 1953, 2432, 2445, 2849
ZrmI	AGTACT	1 cut(s)	1757
Zsp2I	ATGCAT	2 cut(s)	242, 1418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.