Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015112

Physical Location & Seq

Genomic Coordinates Reverse (-)

30162691 .. 30169956

Gene Structure 7266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGGATCCGTGAAGAGAAAGTCGGAGGAAGATGACTCTGCAGCAGCTCCACCCAAAGTAGCCAAGTCGGAGAACCAGAATACTCTTGAAATCGTCAACGATGAACAGATGGTCTGTGTGCACGACGTGTCGTACCCTGAGGGTTACGTTCCTCCGCCGCCGCCGCCGCCTTCTTCTTCTTCCGAACCCGCCAAGAAATTCCCCTTCACTCTCGACCCTTTTCAGTCCGAAGCCATCAAATGCATTGAAAATGGCGAGTCCGTCATGGTGTCTGCTCACACATCTGCCGGAAAAACTGTTGTTGCGTCATACGCGATTGCGTTGTGTTTGCGTAATAAGCAACGTGTGATATACACTGCACCCATCAAAGCTCTCAGCAACCAAAAGTACAGAGAGTTCAAAGAGGAGTTTTCGGATGTTGGGTTGATGACTGGAGATGTAACAATCGACCCCAACGCTTCGTGCTTGGTCATGACCACGGAAATCTGGCGGAGCATGCAGTACAAAGGATCAGAGGTGACGCGAGAGGTGGCTTGGATAATCTTTGATGAGGTGCATTACATGCGGGATCTCGAGAGAGGTGTGGTGTGGGAAGAGAGCATTGTTATGGCTCCAAAGAATGCTCGCTTTGTCTTCCTCTCAGCAACCGTGCCCAATGCTAAGGAATTTGCTGATTGGCTCGCAAAGGTTCATCGACAGCCTTGCCACATTGTCTATACGGATTATAGGCCCACTCCTCTTCAGCATTATATTTTCCCCTCCGGAGGGGATGGTCTGTACTTGGTAGTTGATGAAAAAGGAAAGTTTCGTGAGGACAGCTTTCAACAAGCTCTTAATGCACTTGCTCCTGCCTCCGATGCTGCTAAGAAGAAGGAAAATGGAAAGTGGCAGAAGGGTCTGGTCATCAGCAAGGCCGCTGAAGAAAGCGATATCTTCAAGATGGTGAAAATGATAATTCAGCGTCAGTATGACCCTGTCATACTTTTCAGCTTTAGCAAAAGGGAATGTGAATTACTTGCAATGCAGATGGCAAAGTTGGACCTAAATGGGGACAGTGAGAAAGCAAACATAGAAACCATCTTCTGGAGTGCTATGGATATGCTTTCAGACGACGATAAGAAGTTACCCCAGGCAAGTTGTCATTCCTTCCTTTCCAAGATATGTGTTACCACTATGTTACCCCTTTTAATGCGTGGAATAGGTGTGCATCATTCTGGTTTGATTCCCATTCTAAAGGAAGTGATTGAGATATTATTTCAGGAAGGTCTTATCAAGTGTTTGTTTGCAACAGAGACCTTCAGCATAGGACTGAACATGCCTGCGAAAACTGTTGTATTTACCAATGTCCGGAAATTCGATGGTAATAAGTTCAGATGGATAACCAGTGGTGAGTATATACAAATGAGTGGTCGTGCTGGTCGCCGGGGTATTGATAAACGTGGGATATGCATACTTATGGTAGATGAGAAGCTAGAGCCATCTACTGCCAAAATGATGCTTAAAGGAAATGCTGATAGTTTGAACAGTGCCTTTCATTTAAGCTACAACATGCTTCTGAATCAATTGCGCTCTGAAGATGGTAATCCAGAAAATTTACTTCGTAACTCATTCTATCAGTTCCAAGCTGATCGTGCCATTCCCAATCTGGAGAAACAAGCAAAGGAGCTTGAGCAAGAGAGGGATTCAATTATAATTGAAGAAGAAGATAGTGTAAGGAATTATTACAATCTAGTACAGCAATACAAGAGTTTAAAGCAGGATCTTCGTGAGATTGTGATTTCTCCAAAGTACTGCTTACCATTTCTGAAACCTGGTAGGCTTGTGTCAATCCAATGCACCAAGAGTGATGAAGCTTCCGCTTGTTTTTCTACCGAGGACCATGTCACATGGGGTGTTATACTTAATTTTCAACGAGTAAAAACTGTTTCTGAAGACGATGCAGTTAAGAGACCTGAAGATTCAAACTACACAGTGGATGTTTTGACTAGGTGTCTGGTCGGCACAAATGGAGTTGCAAAAAAAACACTCAAAATTGTTCCTTTGAAAGAACTGGGAGAACCTGTTGTTGTTTCGATTTCCATCTCTCAGATTCAAAGTAGTTCGTACAAAAAAGTGGCTCGTAGGATTGAGGCTTTAGAGAACCTGTTTGACAGGCATGAAATTGCAAAATCACCACTAATTGAGCAAAAGCTCAAGGTTTTTCACATGAAGCAGGAATTGGCAGCGAAGATCAAGTCAATTAAGAAAACAATGCGCTCTTCGACTGCGTTGGCTTTTAAAGATGAACTTAAGGCACGAAAACGGGTTCTTCGGAGGCTAGGATATGTTACTAGCGATGATGTTGTGCAGTTGAAGGGTAAGGTTGCTTGTGAAATCAGTAGTGCAGATGAGTTGACCCTCACAGAGCTCATGTTCAATGGCGTTTTCAAGGACATAAAGGTAGAAGAGATGGTATCTCTTCTCTCATGTTTTGTTTGGCGGGAAAAACTAAAAGATGCTACAAAACCAAGGGAAGAACTTGACCTGCTCTTCTTGCAATTACAAGAAACTGCTCGGAGGGTGGCTGAAGTTCAGCTTGAGTGCAAGGTTGAAATTGACATCGATAGCTTTGTGAGTTCATTTCGGCCTGATATTATGGAGGCTGCATATGCTTGGGCAAAAGGGTCAAAATTTTACGAGATAATGTCAGTTACAGGGGTTTTCGAGGGTAGCTTAATCAGGGCAATCAGGAGATTAGAGGAAGTTCTTCAGCAACTTATACACGCAGCCAATTCTATTGGAGAAACTGATCTTGAATCAAAATTTGAGGAGGCTGTTTCAAAAATCAAGAGAGACATTGTCTTTGCAGCTTCCCTATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

954

Amino Acids

107.89

Weight (kDa)

6.48

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	70 - 217	3e-09	Type III restriction enzyme, res subunit
DEAD	PF00270	73 - 222	6.5e-27	DEAD/DEAH box helicase
DEXQc_Suv3	PF22527	94 - 204	1.9e-07	DEXQ-box helicase domain of Suv3
MTR4-like_stalk	PF21408	530 - 592	7.7e-21	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	594 - 699	2.1e-16	Mtr4-like, beta-barrel domain
MTR4_beta-barrel	PF13234	697 - 752	5.3e-07	Mtr4-like, beta-barrel domain
DSHCT	PF08148	779 - 949	6.4e-55	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59760
fragaria_vesca	FvH4_5g28050 FvH4_5g28050 FvH4_5g28050
malus_domestica	MD08G1247600.v1.1
prunus_persica	Prupe.6G113400_v2.0.a1
pyrus_communis	pycom08g21450
rosa_chinensis	RchiOBHm_Chr7g0220221
rosa_laevigata	RLG00000002249
rosa_multiflora	Rmu_sc0001136.1_g000019
rosa_roxburghii	Rroxscaffold_3G00239700
rosa_rugosa	Rorug07G0191200
rosa_samantha	Rh7AG333300 Rh7CG350900 Rh7DG329600
rosa_wichuraiana	Rw7G028110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1691
Acc36I	ACCTGC	1 cut(s)	2532
AccB7I	CCANNNNNTGG	1 cut(s)	1083
AccII	CGCG	2 cut(s)	314, 523
AccIII	TCCGGA	2 cut(s)	761, 1347
AclWI	GGATC	4 cut(s)	13, 517, 576, 1767
AcsI	RAATTY	6 cut(s)	197, 665, 1352, 1591, 2669, 2801
AcuI	CTGAAG	8 cut(s)	725, 939, 1282, 1593, 1950, 1974, 2586, 2732
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	7 cut(s)	134, 389, 503, 779, 1734, 1790, 2105
AfiI	CCNNNNNNNGG	5 cut(s)	764, 765, 1048, 1083, 1347
AflII	CTTAAG	1 cut(s)	2288
AflIII	ACRYGT	2 cut(s)	126, 343
AhdI	GACNNNNNGTC	1 cut(s)	1989
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	1128, 1810
AjuI	GAANNNNNNNTTGG	2 cut(s)	2201, 2233
Alw21I	GWGCWC	2 cut(s)	123, 2409
Alw26I	GTCTC	3 cut(s)	1286, 1942, 2826
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	4 cut(s)	13, 517, 576, 1767
Ama87I	CYCGRG	1 cut(s)	572
Aor13HI	TCCGGA	2 cut(s)	761, 1347
AoxI	GGCC	3 cut(s)	728, 912, 2624
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	7 cut(s)	41, 44, 860, 2222, 2642, 2765, 2846
ApoI	RAATTY	6 cut(s)	197, 665, 1352, 1591, 2669, 2801
ArsI	GACNNNNNNTTYG	6 cut(s)	1393, 1425, 2219, 2251, 2825, 2857
Asp700I	GAANNNNTTC	1 cut(s)	2745
AspLEI	GCGC	2 cut(s)	1569, 2256
AspS9I	GGNCC	3 cut(s)	729, 1039, 1876
AsuC2I	CCSGG	1 cut(s)	1424
AsuHPI	GGTGA	4 cut(s)	529, 955, 1400, 2163
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	1039, 1876
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	2 cut(s)	123, 654
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	2409
BbsI	GAAGAC	2 cut(s)	625, 1938
Bbv12I	GWGCWC	2 cut(s)	123, 2409
BbvI	GCAGC	7 cut(s)	53, 56, 847, 2234, 2629, 2777, 2858
BcgI	CGANNNNNNTGC	4 cut(s)	684, 718, 1745, 1779
BciT130I	CCWGG	2 cut(s)	1130, 1812
BcnI	CCSGG	1 cut(s)	1424
BcoDI	GTCTC	3 cut(s)	1286, 1942, 2826
BfaI	CTAG	5 cut(s)	1472, 1730, 1986, 2318, 2331
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	2288
BfuAI	ACCTGC	1 cut(s)	2532
BmcAI	AGTACT	1 cut(s)	1790
Bme1390I	CCNGG	3 cut(s)	1130, 1424, 1812
Bme18I	GGWCC	2 cut(s)	1039, 1876
BmeRI	GACNNNNNGTC	1 cut(s)	1989
BmeT110I	CYCGRG	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	729, 1039, 1876
BmiI	GGNNCC	2 cut(s)	7, 612
BmrFI	CCNGG	3 cut(s)	1130, 1424, 1812
BmrI	ACTGGG	1 cut(s)	2060
BmsI	GCATC	5 cut(s)	847, 1216, 1485, 1927, 2485
BmuI	ACTGGG	1 cut(s)	2060
BpiI	GAAGAC	2 cut(s)	625, 1938
BpmI	CTGGAG	3 cut(s)	453, 1105, 1667
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	3 cut(s)	1688, 2177, 2597
BpuMI	CCSGG	1 cut(s)	1424
Bsa29I	ATCGAT	1 cut(s)	2601
BsaBI	GATNNNNATC	2 cut(s)	1581, 2078
BsaI	GGTCTC	2 cut(s)	1286, 1942
BsaJI	CCNNGG	5 cut(s)	477, 1128, 1423, 1872, 2507
BsaWI	WCCGGW	2 cut(s)	761, 1347
BsaXI	ACNNNNNCTCC	2 cut(s)	2046, 2076
Bsc4I	CCNNNNNNNGG	5 cut(s)	764, 765, 1048, 1083, 1347
Bse1I	ACTGG	3 cut(s)	436, 1383, 2055
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	1026
Bse8I	GATNNNNATC	2 cut(s)	1581, 2078
BseAI	TCCGGA	2 cut(s)	761, 1347
BseBI	CCWGG	2 cut(s)	1130, 1812
BseCI	ATCGAT	1 cut(s)	2601
BseDI	CCNNGG	5 cut(s)	477, 1128, 1423, 1872, 2507
BseGI	GGATG	3 cut(s)	421, 775, 1981
BseJI	GATNNNNATC	2 cut(s)	1581, 2078
BseLI	CCNNNNNNNGG	5 cut(s)	764, 765, 1048, 1083, 1347
BseMI	GCAATG	1 cut(s)	1026
BseMII	CTCAG	4 cut(s)	129, 388, 654, 2099
BseNI	ACTGG	3 cut(s)	436, 1383, 2055
BseRI	GAGGAG	3 cut(s)	419, 726, 2822
BseSI	GKGCMC	2 cut(s)	123, 654
BseXI	GCAGC	7 cut(s)	53, 56, 847, 2234, 2629, 2777, 2858
BsgI	GTGCAG	3 cut(s)	342, 2366, 2403
Bsh1236I	CGCG	2 cut(s)	314, 523
BshFI	GGCC	3 cut(s)	730, 914, 2626
BshVI	ATCGAT	1 cut(s)	2601
BsiHKAI	GWGCWC	2 cut(s)	123, 2409
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	4 cut(s)	288, 762, 1348, 1423
BslFI	GGGAC	1 cut(s)	1064
BslI	CCNNNNNNNGG	5 cut(s)	764, 765, 1048, 1083, 1347
BsmAI	GTCTC	3 cut(s)	1286, 1942, 2826
BsmFI	GGGAC	1 cut(s)	1064
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	730, 914, 2626
Bso31I	GGTCTC	2 cut(s)	1286, 1942
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	123, 654, 2409
Bsp13I	TCCGGA	2 cut(s)	761, 1347
Bsp143I	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
BspANI	GGCC	3 cut(s)	730, 914, 2626
BspCNI	CTCAG	4 cut(s)	130, 387, 653, 2098
BspDI	ATCGAT	1 cut(s)	2601
BspEI	TCCGGA	2 cut(s)	761, 1347
BspFNI	CGCG	2 cut(s)	314, 523
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	7, 612
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	2532
BspPI	GGATC	4 cut(s)	13, 517, 576, 1767
BspQI	GCTCTTC	2 cut(s)	2263, 2534
BspTI	CTTAAG	1 cut(s)	2288
BspTNI	GGTCTC	2 cut(s)	1286, 1942
BsrDI	GCAATG	1 cut(s)	1026
BsrI	ACTGG	3 cut(s)	436, 1383, 2055
BssECI	CCNNGG	5 cut(s)	477, 1128, 1423, 1872, 2507
BssMI	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
BssT1I	CCWWGG	1 cut(s)	2507
Bst2UI	CCWGG	2 cut(s)	1130, 1812
Bst4CI	ACNGT	7 cut(s)	298, 649, 1055, 1330, 1526, 1924, 1972
Bst6I	CTCTTC	7 cut(s)	8, 588, 744, 2263, 2439, 2463, 2534
BstAFI	CTTAAG	1 cut(s)	2288
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstC8I	GCNNGC	4 cut(s)	497, 625, 681, 1320
BstDEI	CTNAG	6 cut(s)	138, 374, 640, 660, 864, 2085
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	421, 775, 1981
BstFNI	CGCG	2 cut(s)	314, 523
BstHHI	GCGC	2 cut(s)	1569, 2256
BstKTI	GATC	7 cut(s)	8, 512, 571, 1630, 1762, 2232, 2791
BstMAI	GTCTC	3 cut(s)	1286, 1942, 2826
BstMBI	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
BstNI	CCWGG	2 cut(s)	1130, 1812
BstNSI	RCATGY	4 cut(s)	499, 565, 1318, 1552
BstSCI	CCNGG	3 cut(s)	1128, 1422, 1810
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	123, 654
BstUI	CGCG	2 cut(s)	314, 523
BstV1I	GCAGC	7 cut(s)	53, 56, 847, 2234, 2629, 2777, 2858
BstV2I	GAAGAC	2 cut(s)	625, 1938
BstX2I	RGATCY	3 cut(s)	5, 568, 1759
BstYI	RGATCY	3 cut(s)	5, 568, 1759
Bsu15I	ATCGAT	1 cut(s)	2601
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	730, 914, 2626
BsuTUI	ATCGAT	1 cut(s)	2601
BtgI	CCRYGG	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	2349
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	421, 775, 1981
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	5 cut(s)	354, 1060, 1390, 1531, 1977
BveI	ACCTGC	1 cut(s)	2532
Cac8I	GCNNGC	4 cut(s)	497, 625, 681, 1320
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	2 cut(s)	1569, 2256
Cfr13I	GGNCC	3 cut(s)	729, 1039, 1876
ClaI	ATCGAT	1 cut(s)	2601
CseI	GACGC	3 cut(s)	294, 529, 950
CsiI	ACCWGGT	1 cut(s)	1810
Csp6I	GTAC	7 cut(s)	133, 388, 502, 778, 1733, 1789, 2104
CviQI	GTAC	7 cut(s)	133, 388, 502, 778, 1733, 1789, 2104
DdeI	CTNAG	6 cut(s)	138, 374, 640, 660, 864, 2085
DpnI	GATC	7 cut(s)	7, 511, 570, 1629, 1761, 2231, 2790
DpnII	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
DraI	TTTAAA	2 cut(s)	1752, 2278
DraIII	CACNNNGTG	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	1989
Eam1104I	CTCTTC	7 cut(s)	8, 588, 744, 2263, 2439, 2463, 2534
Eam1105I	GACNNNNNGTC	1 cut(s)	1989
EarI	CTCTTC	7 cut(s)	8, 588, 744, 2263, 2439, 2463, 2534
EciI	GGCGGA	2 cut(s)	144, 505
Ecl136II	GAGCTC	1 cut(s)	2407
Eco130I	CCWWGG	1 cut(s)	2507
Eco24I	GRGCYC	1 cut(s)	2409
Eco31I	GGTCTC	2 cut(s)	1286, 1942
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	1039, 1876
Eco53kI	GAGCTC	1 cut(s)	2407
Eco57I	CTGAAG	8 cut(s)	725, 939, 1282, 1593, 1950, 1974, 2586, 2732
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	2407
EcoRII	CCWGG	2 cut(s)	1128, 1810
EcoRV	GATATC	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	2507
EcoT22I	ATGCAT	2 cut(s)	245, 1451
EcoT38I	GRGCYC	1 cut(s)	2409
ErhI	CCWWGG	1 cut(s)	2507
FalI	AAGNNNNNCTT	6 cut(s)	1778, 1810, 2271, 2303, 2559, 2591
FaqI	GGGAC	1 cut(s)	1064
FauI	CCCGC	3 cut(s)	196, 558, 2472
FauNDI	CATATG	1 cut(s)	2647
FokI	GGATG	3 cut(s)	428, 782, 1988
FriOI	GRGCYC	1 cut(s)	2409
FspBI	CTAG	5 cut(s)	1472, 1730, 1986, 2318, 2331
GlaI	GCGC	2 cut(s)	1568, 2255
GsuI	CTGGAG	3 cut(s)	453, 1105, 1667
HaeIII	GGCC	3 cut(s)	730, 914, 2626
HapII	CCGG	4 cut(s)	288, 762, 1348, 1423
HgaI	GACGC	3 cut(s)	294, 529, 950
HhaI	GCGC	2 cut(s)	1569, 2256
Hin6I	GCGC	2 cut(s)	1567, 2254
HinP1I	GCGC	2 cut(s)	1567, 2254
HincII	GTYRAC	2 cut(s)	97, 2394
HindII	GTYRAC	2 cut(s)	97, 2394
HindIII	AAGCTT	1 cut(s)	1851
HinfI	GANTC	8 cut(s)	35, 257, 1222, 1558, 1682, 1958, 2089, 2795
HpaII	CCGG	4 cut(s)	288, 762, 1348, 1423
HphI	GGTGA	4 cut(s)	529, 955, 1400, 2163
Hpy166II	GTNNAC	3 cut(s)	97, 121, 2394
Hpy8I	GTNNAC	3 cut(s)	97, 121, 2394
Hpy99I	CGWCG	2 cut(s)	128, 1115
HpyAV	CCTTC	8 cut(s)	180, 214, 865, 886, 1156, 1256, 1306, 2347
HpyCH4III	ACNGT	7 cut(s)	298, 649, 1055, 1330, 1526, 1924, 1972
HpyCH4IV	ACGT	4 cut(s)	126, 147, 343, 1438
HpyF3I	CTNAG	6 cut(s)	138, 374, 640, 660, 864, 2085
HpySE526I	ACGT	4 cut(s)	126, 147, 343, 1438
HspAI	GCGC	2 cut(s)	1567, 2254
Kpn2I	TCCGGA	2 cut(s)	761, 1347
Kzo9I	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
LguI	GCTCTTC	2 cut(s)	2263, 2534
LmnI	GCTCC	5 cut(s)	52, 492, 616, 850, 1663
Lsp1109I	GCAGC	7 cut(s)	53, 56, 847, 2234, 2629, 2777, 2858
LweI	GCATC	5 cut(s)	847, 1216, 1485, 1927, 2485
MabI	ACCWGGT	1 cut(s)	1810
MaeI	CTAG	5 cut(s)	1472, 1730, 1986, 2318, 2331
MaeII	ACGT	4 cut(s)	126, 147, 343, 1438
MalI	GATC	7 cut(s)	7, 511, 570, 1629, 1761, 2231, 2790
MboI	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
MfeI	CAATTG	1 cut(s)	1562
MflI	RGATCY	3 cut(s)	5, 568, 1759
MhlI	GDGCHC	3 cut(s)	123, 654, 2409
MlyI	GAGTC	2 cut(s)	29, 266
MmeI	TCCRAC	2 cut(s)	48, 1017
Mph1103I	ATGCAT	2 cut(s)	245, 1451
MroI	TCCGGA	2 cut(s)	761, 1347
MroXI	GAANNNNTTC	1 cut(s)	2745
MslI	CAYNNNNRTG	2 cut(s)	605, 1454
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	1 cut(s)	2288
MspI	CCGG	4 cut(s)	288, 762, 1348, 1423
MspR9I	CCNGG	3 cut(s)	1130, 1424, 1812
MunI	CAATTG	1 cut(s)	1562
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	1130, 1812
MvnI	CGCG	2 cut(s)	314, 523
NciI	CCSGG	1 cut(s)	1424
NdeI	CATATG	1 cut(s)	2647
NdeII	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
NlaIV	GGNNCC	2 cut(s)	7, 612
NmuCI	GTSAC	2 cut(s)	517, 1882
NsiI	ATGCAT	2 cut(s)	245, 1451
NspI	RCATGY	4 cut(s)	499, 565, 1318, 1552
PaeI	GCATGC	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	471
PciSI	GCTCTTC	2 cut(s)	2263, 2534
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	2745
PfeI	GAWTC	6 cut(s)	1222, 1558, 1682, 1958, 2089, 2795
PflFI	GACNNNGTC	3 cut(s)	974, 1880, 2837
PflMI	CCANNNNNTGG	1 cut(s)	1083
PleI	GAGTC	2 cut(s)	29, 265
PpsI	GAGTC	2 cut(s)	29, 265
PsiI	TTATAA	1 cut(s)	1691
Psp124BI	GAGCTC	1 cut(s)	2409
Psp6I	CCWGG	2 cut(s)	1128, 1810
PspGI	CCWGG	2 cut(s)	1128, 1810
PspN4I	GGNNCC	2 cut(s)	7, 612
PspPI	GGNCC	3 cut(s)	729, 1039, 1876
PsrI	GAACNNNNNNTAC	2 cut(s)	380, 412
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	5, 568, 1759
PsyI	GACNNNGTC	3 cut(s)	974, 1880, 2837
RsaI	GTAC	7 cut(s)	134, 389, 503, 779, 1734, 1790, 2105
RsaNI	GTAC	7 cut(s)	133, 388, 502, 778, 1733, 1789, 2104
RseI	CAYNNNNRTG	2 cut(s)	605, 1454
SacI	GAGCTC	1 cut(s)	2409
SapI	GCTCTTC	2 cut(s)	2263, 2534
Sau3AI	GATC	7 cut(s)	5, 509, 568, 1627, 1759, 2229, 2788
Sau96I	GGNCC	3 cut(s)	729, 1039, 1876
ScaI	AGTACT	1 cut(s)	1790
SchI	GAGTC	2 cut(s)	29, 266
ScrFI	CCNGG	3 cut(s)	1130, 1424, 1812
SduI	GDGCHC	3 cut(s)	123, 654, 2409
SexAI	ACCWGGT	1 cut(s)	1810
SfaNI	GCATC	5 cut(s)	847, 1216, 1485, 1927, 2485
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	572
SinI	GGWCC	2 cut(s)	1039, 1876
SlaI	CTCGAG	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	605, 1454
SmlI	CTYRAG	5 cut(s)	572, 1667, 2192, 2288, 2576
SmoI	CTYRAG	5 cut(s)	572, 1667, 2192, 2288, 2576
SphI	GCATGC	1 cut(s)	499
SspMI	CTAG	5 cut(s)	1472, 1730, 1986, 2318, 2331
SstI	GAGCTC	1 cut(s)	2409
StyD4I	CCNGG	3 cut(s)	1128, 1422, 1810
StyI	CCWWGG	1 cut(s)	2507
TaaI	ACNGT	7 cut(s)	298, 649, 1055, 1330, 1526, 1924, 1972
TaiI	ACGT	4 cut(s)	129, 150, 346, 1441
TaqI	TCGA	9 cut(s)	213, 447, 573, 694, 1356, 2072, 2261, 2601, 2703
TatI	WGTACW	5 cut(s)	387, 501, 777, 1732, 1788
TauI	GCSGC	5 cut(s)	160, 163, 166, 169, 917
TfiI	GAWTC	6 cut(s)	1222, 1558, 1682, 1958, 2089, 2795
TscAI	CASTG	5 cut(s)	361, 1060, 1390, 1531, 1977
TseFI	GTSAC	2 cut(s)	517, 1882
TseI	GCWGC	7 cut(s)	41, 44, 860, 2222, 2642, 2765, 2846
Tsp45I	GTSAC	2 cut(s)	517, 1882
TspDTI	ATGAA	9 cut(s)	117, 680, 807, 1523, 1863, 2172, 2222, 2298, 2607
TspGWI	ACGGA	3 cut(s)	250, 494, 734
TspRI	CASTG	5 cut(s)	361, 1060, 1390, 1531, 1977
Tth111I	GACNNNGTC	3 cut(s)	974, 1880, 2837
Van91I	CCANNNNNTGG	1 cut(s)	1083
Vha464I	CTTAAG	1 cut(s)	2288
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	1039, 1876
XapI	RAATTY	6 cut(s)	197, 665, 1352, 1591, 2669, 2801
XceI	RCATGY	4 cut(s)	499, 565, 1318, 1552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1642
XhoI	CTCGAG	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	2745
XspI	CTAG	5 cut(s)	1472, 1730, 1986, 2318, 2331
ZrmI	AGTACT	1 cut(s)	1790
Zsp2I	ATGCAT	2 cut(s)	245, 1451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.