Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015112

Physical Location & Seq

Genomic Coordinates Forward (+)

38465549 .. 38473020

Gene Structure 7472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG333300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGGGATCCCTGAAGAGAAAATCGGAGGAAGATGACTCTGCAGCAGCTCCACCCAAAGTAGCCAAGTCGGAGAACAAGAACACTCTTGAAATCGTCAACAATGAACAGATGGTCTGCGTGCACGACGTGTCGTACCCTGAGGGTTACGTTCCTCCGCCGCCGCCGCCTTCTTCTTCCGAACCCGTCAAGAAATTCCCCTTCACTCTCGACCCTTTTCAGTCCGAAGCCATCAAATGCATTGAAAATGGGGAGTCCGTCATGGTGTCTGCTCACACATCTGCTGGAAAAACTGTTGTTGCGTCGTACGCGATTGCGTTGTGTTTGCGTAATAAGCAACGTGTGATATACACGGCACCCATCAAAGCTCTCAGCAACCAAAAGTACAGAGAGTTCAAAGAGGAGTTTTCGGATGTTGGGTTGATGACTGGAGATGTAACAATCGACCCCAACGCTTCGTGCTTGGTGATGACCACGGAAATCTGGCGGAGCATGCAGTACAAAGGATCAGAGGTGACGCGAGAGGTGGCTTGGATAATCTTTGATGAGGTGCATTACATGCGGGATCTCGAGAGAGGTGTGGTGTGGGAAGAGAGCATTGTTATGGCTCCAAAGAATGCTCGCTTTGTCTTCCTCTCAGCAACTGTGCCCAATGCTAAGGAATTTGCTGATTGGCTCGCCAAGGTTCATCGACAGCCTTGCCACATTGTCTATACGGATTATAGGCCCACTCCTCTTCAGCATTATATTTTCCCCTCCGGAGGGGATGGTCTGTACTTGGTAGTTGATGAAAAAGGAAAGTTTCGTGAGGACAGCTTTCAACAAGCTCTTAATGCACTTGCTCCTGCCTCCGACGCTGCTAAGAAGAAGGAAAATGGAAAGTGGCAGAAGGGTCTGGTCATCGGCAAGGCCGCTGAAGAAAGCGATATCTTCAAGATGGTGAAAATGATAATACAGCGTCAGTATGACCCTGTCATACTTTTCAGCTTTAGCAAAAGGGAATGTGAATTACTTGCAATGCAGATGGCAAAGTTGGACCTAAATGGGGACAGTGAGAAAGCAAACATAGAAACCATCTTCTGGAGTGCTATGGATATGCTTTCAGACGATGATAAGAAGTTACCCCAGGTTACCACTATGTTACCCCTTTTAATGCGTGGAATAGGTGTGCATCATTCTGGTTTGATTCCCATTCTAAAGGAAGTGATTGAGATATTATTTCAGGAAGGTCTTATCAAGTGTTTATTTGCAACAGAGACCTTCAGCATAGGACTGAACATGCCTGCGAAAACTGTTGTATTTACCAATGTCCGGAAATTTGATGGTAATAAGTTCAGATGGATAACCAGTGGTGAGTATATACAAATGAGTGGTCGTGCTGGTCGCCGGGGTATTGATAAACGTGGGATATGCATACTTATGGTAGATGAGAAGCTAGAGCCATCTACTGCCAAAATGATGCTTAAAGGAAATGCTGATAGTTTGAACAGTGCCTTTCATTTAAGCTACAACATGCTTCTGAATCAATTGCGCTCTGAAGATGGTAATCCAGAAAATTTACTTCGTAACTCATTCTATCAGTTCCAAGCTGATCGTGCCATTCCCAATCTGGAGAAACAAACAAAGGAGCTTGAGCAAGAGAGGGATTCAATTATAATTGAAGAAGAAGATAGTGTAAGGAATTATTACAATCTAGTACAGCAATACAAGAGTTTAAAGCAGGATCTTCGTGAGATTGTGATTTCTCCAAAGTACTGCTTACCATTTCTGAAACCTGGTAGGCTTGTGTCAATCCAATGCACCAAGAGTGATGAAGCTTCCGCTTCTTTTTCTACCGAGGACCATGTCACATGGGGTGTTATACTTAATTTTCAACGAGTGAAAACTGTTTCTGAAGATGATGCAGTTAAGAGACCTGAAGATTCAAACTACACAGTGGATGTTTTGACTAGGTGTCTGGTCGGCACAAATGGAGTTGCAAAAAAAACACTCAAAATTGTTCCTTTGAAAGAACTGGGAGAACCTGTTGTTGTTTCGATTTCCATCTCTCAGATTAATAACATGAGTCGACTTTGTATGGTCATACCAAATGATCTTTTGTCATTACAAGCTCGAGAAAACACACTGAAGAAAGTTCTTGAAACTCTTTCAAGATTTGGAGAGAAGATTCCTCTTTTAGATCCTGAAGAAGACATGAAGATTCAAAGTAGTTCGTACAAAAAAGTGGCTCGTAGGATTGAGGCTTTAGAGAACCTGTTTGACAGGCATGAAATTGCAAAATCACCACTAATTGAGCAAAAGCTCAAGGTTTTTCACATGAAGCAGGAATTGGCAGCGAAGATCAAGTCAATTAAGAAAACAATGCGCTCTTCGACTGCGTTGGCTTTTAAAGATGAACTTAAGGCACGAAAACGGGTTCTTCGGAGGCTAGGATATGTTACTAGCGATGATGTTGTGCAGTTGAAGGGTAAGGTTGCTTGTGAAATCAGTAGTGCAGATGAGTTGACCCTCACAGAGCTCATGTTCAATGGCGTTTTCAAGGACATAAAGGTAGAAGAGATGGTATCTCTTCTCTCATGTTTTGTTTGGCGGGAAAAACTAAAAGATGCTACAAAACCAAGGGAAGAACTTGACCTGCTCTTCTTGCAATTACAAGAAACTGCTCGGAGGGTGGCTGAAGTTCAGCTTGAGTGCAAGGTTGAAATTGACATCGATAGCTTTGTGAGTTCATTTCGGCCTGATATTATGGAGGCTGCATATGCTTGGGCAAAAGGGTCAAAATTTTATGAGATAATGTCAGTTACAGGGGTTTTCGAGGGTAGCTTAATCAGGGCAATCAGGAGATTAGAGGAAGTTCTTCAGCAACTTATACACGCAGCCAATTCTATTGGAGAAACTGATCTTGAATCAAAATTTGAGGAGGCTGTTTCAAAAATCAAGAGAGACATTGTCTTTGCAGCTTCCCTATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

990

Amino Acids

112.2

Weight (kDa)

6.46

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	68 - 215	3.1e-09	Type III restriction enzyme, res subunit
DEAD	PF00270	71 - 220	6.9e-27	DEAD/DEAH box helicase
DEXQc_Suv3	PF22527	92 - 202	2e-07	DEXQ-box helicase domain of Suv3
MTR4-like_stalk	PF21408	517 - 579	1.6e-20	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	581 - 788	9.7e-49	Mtr4-like, beta-barrel domain
DSHCT	PF08148	815 - 985	6.8e-55	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59760
fragaria_vesca	FvH4_5g28050 FvH4_5g28050 FvH4_5g28050
malus_domestica	MD08G1247600.v1.1
prunus_persica	Prupe.6G113400_v2.0.a1
pyrus_communis	pycom08g21450
rosa_chinensis	RchiOBHm_Chr7g0220221
rosa_laevigata	RLG00000002249
rosa_multiflora	Rmu_sc0001136.1_g000019
rosa_roxburghii	Rroxscaffold_3G00239700
rosa_rugosa	Rorug07G0191200
rosa_samantha	Rh7AG333300 Rh7CG350900 Rh7DG329600
rosa_wichuraiana	Rw7G028110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1652
Acc36I	ACCTGC	1 cut(s)	2640
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	1077
AccI	GTMKAC	1 cut(s)	2065
AccII	CGCG	2 cut(s)	308, 517
AccIII	TCCGGA	2 cut(s)	755, 1308
AciI	CCGC	9 cut(s)	155, 158, 161, 164, 484, 559, 909, 1818, 2587
AclWI	GGATC	5 cut(s)	13, 511, 570, 1728, 2171
AcsI	RAATTY	6 cut(s)	191, 659, 1313, 1552, 2777, 2909
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	8 cut(s)	134, 305, 383, 497, 773, 1695, 1751, 2213
AfiI	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
AflII	CTTAAG	1 cut(s)	2396
AflIII	ACRYGT	2 cut(s)	126, 337
AhdI	GACNNNNNGTC	1 cut(s)	1950
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	1122, 1771
AjuI	GAANNNNNNNTTGG	2 cut(s)	2309, 2341
Alw21I	GWGCWC	2 cut(s)	123, 2517
Alw26I	GTCTC	3 cut(s)	1247, 1903, 2934
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	5 cut(s)	13, 511, 570, 1728, 2171
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	2 cut(s)	566, 2109
Aor13HI	TCCGGA	2 cut(s)	755, 1308
AoxI	GGCC	3 cut(s)	722, 906, 2732
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	7 cut(s)	41, 44, 854, 2330, 2750, 2873, 2954
ApoI	RAATTY	6 cut(s)	191, 659, 1313, 1552, 2777, 2909
ArsI	GACNNNNNNTTYG	6 cut(s)	1354, 1386, 2327, 2359, 2933, 2965
AseI	ATTAAT	1 cut(s)	2052
Asp700I	GAANNNNTTC	1 cut(s)	2853
AspLEI	GCGC	2 cut(s)	1530, 2364
AspS9I	GGNCC	3 cut(s)	723, 1033, 1837
AsuC2I	CCSGG	1 cut(s)	1385
AsuHPI	GGTGA	5 cut(s)	475, 523, 949, 1361, 2271
AvaI	CYCGRG	2 cut(s)	566, 2109
AvaII	GGWCC	2 cut(s)	1033, 1837
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	2 cut(s)	123, 648
BamHI	GGATCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	2517
BbsI	GAAGAC	2 cut(s)	619, 2193
Bbv12I	GWGCWC	2 cut(s)	123, 2517
BbvI	GCAGC	7 cut(s)	53, 56, 841, 2342, 2737, 2885, 2966
BceAI	ACGGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	4 cut(s)	678, 712, 1706, 1740
BciT130I	CCWGG	2 cut(s)	1124, 1773
BcnI	CCSGG	1 cut(s)	1385
BcoDI	GTCTC	3 cut(s)	1247, 1903, 2934
BfaI	CTAG	5 cut(s)	1433, 1691, 1947, 2426, 2439
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	2396
BfuAI	ACCTGC	1 cut(s)	2640
BmcAI	AGTACT	1 cut(s)	1751
Bme1390I	CCNGG	3 cut(s)	1124, 1385, 1773
Bme18I	GGWCC	2 cut(s)	1033, 1837
BmeRI	GACNNNNNGTC	1 cut(s)	1950
BmeT110I	CYCGRG	2 cut(s)	566, 2109
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	723, 1033, 1837
BmiI	GGNNCC	3 cut(s)	7, 354, 606
BmrFI	CCNGG	3 cut(s)	1124, 1385, 1773
BmrI	ACTGGG	1 cut(s)	2021
BmsI	GCATC	4 cut(s)	1177, 1446, 1888, 2593
BmuI	ACTGGG	1 cut(s)	2021
BpiI	GAAGAC	2 cut(s)	619, 2193
BpmI	CTGGAG	3 cut(s)	447, 1099, 1628
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	3 cut(s)	1649, 2285, 2705
BpuMI	CCSGG	1 cut(s)	1385
Bsa29I	ATCGAT	1 cut(s)	2709
BsaBI	GATNNNNATC	2 cut(s)	1542, 2039
BsaI	GGTCTC	2 cut(s)	1247, 1903
BsaJI	CCNNGG	6 cut(s)	471, 678, 1122, 1384, 1833, 2615
BsaWI	WCCGGW	2 cut(s)	755, 1308
BsaXI	ACNNNNNCTCC	2 cut(s)	2007, 2037
Bsc4I	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
Bse1I	ACTGG	3 cut(s)	430, 1344, 2016
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	1020
Bse8I	GATNNNNATC	2 cut(s)	1542, 2039
BseAI	TCCGGA	2 cut(s)	755, 1308
BseBI	CCWGG	2 cut(s)	1124, 1773
BseCI	ATCGAT	1 cut(s)	2709
BseDI	CCNNGG	6 cut(s)	471, 678, 1122, 1384, 1833, 2615
BseGI	GGATG	3 cut(s)	415, 769, 1942
BseJI	GATNNNNATC	2 cut(s)	1542, 2039
BseLI	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	129, 382, 648, 2060
BseNI	ACTGG	3 cut(s)	430, 1344, 2016
BseRI	GAGGAG	3 cut(s)	413, 720, 2930
BseSI	GKGCMC	2 cut(s)	123, 648
BseXI	GCAGC	7 cut(s)	53, 56, 841, 2342, 2737, 2885, 2966
BsgI	GTGCAG	2 cut(s)	2474, 2511
Bsh1236I	CGCG	2 cut(s)	308, 517
BshFI	GGCC	3 cut(s)	724, 908, 2734
BshNI	GGYRCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	2709
BsiHKAI	GWGCWC	2 cut(s)	123, 2517
BsiHKCI	CYCGRG	2 cut(s)	566, 2109
BsiSI	CCGG	3 cut(s)	756, 1309, 1384
BsiWI	CGTACG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
BsmAI	GTCTC	3 cut(s)	1247, 1903, 2934
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	724, 908, 2734
Bso31I	GGTCTC	2 cut(s)	1247, 1903
BsoBI	CYCGRG	2 cut(s)	566, 2109
Bsp1286I	GDGCHC	3 cut(s)	123, 648, 2517
Bsp13I	TCCGGA	2 cut(s)	755, 1308
Bsp143I	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
BspACI	CCGC	9 cut(s)	155, 158, 161, 164, 484, 559, 909, 1818, 2587
BspANI	GGCC	3 cut(s)	724, 908, 2734
BspCNI	CTCAG	4 cut(s)	130, 381, 647, 2059
BspDI	ATCGAT	1 cut(s)	2709
BspEI	TCCGGA	2 cut(s)	755, 1308
BspFNI	CGCG	2 cut(s)	308, 517
BspLI	GGNNCC	3 cut(s)	7, 354, 606
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	2640
BspPI	GGATC	5 cut(s)	13, 511, 570, 1728, 2171
BspQI	GCTCTTC	2 cut(s)	2371, 2642
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	2396
BspTNI	GGTCTC	2 cut(s)	1247, 1903
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	3 cut(s)	430, 1344, 2016
BssECI	CCNNGG	6 cut(s)	471, 678, 1122, 1384, 1833, 2615
BssMI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
BssT1I	CCWWGG	2 cut(s)	678, 2615
Bst2UI	CCWGG	2 cut(s)	1124, 1773
Bst4CI	ACNGT	7 cut(s)	292, 643, 1049, 1291, 1487, 1885, 1933
Bst6I	CTCTTC	7 cut(s)	8, 582, 738, 2371, 2547, 2571, 2642
BstAFI	CTTAAG	1 cut(s)	2396
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstC8I	GCNNGC	5 cut(s)	119, 491, 619, 675, 1281
BstDEI	CTNAG	6 cut(s)	138, 368, 634, 654, 858, 2046
BstDSI	CCRYGG	1 cut(s)	471
BstEII	GGTNACC	1 cut(s)	1126
BstF5I	GGATG	3 cut(s)	415, 769, 1942
BstFNI	CGCG	2 cut(s)	308, 517
BstHHI	GCGC	2 cut(s)	1530, 2364
BstKTI	GATC	9 cut(s)	8, 506, 565, 1591, 1723, 2092, 2179, 2340, 2899
BstMAI	GTCTC	3 cut(s)	1247, 1903, 2934
BstMBI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
BstNI	CCWGG	2 cut(s)	1124, 1773
BstNSI	RCATGY	4 cut(s)	493, 559, 1279, 1513
BstPI	GGTNACC	1 cut(s)	1126
BstSCI	CCNGG	3 cut(s)	1122, 1383, 1771
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	123, 648
BstUI	CGCG	2 cut(s)	308, 517
BstV1I	GCAGC	7 cut(s)	53, 56, 841, 2342, 2737, 2885, 2966
BstV2I	GAAGAC	2 cut(s)	619, 2193
BstX2I	RGATCY	4 cut(s)	5, 562, 1720, 2176
BstYI	RGATCY	4 cut(s)	5, 562, 1720, 2176
Bsu15I	ATCGAT	1 cut(s)	2709
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	724, 908, 2734
BsuTUI	ATCGAT	1 cut(s)	2709
BtgI	CCRYGG	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	2457
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	415, 769, 1942
BtsIMutI	CAGTG	5 cut(s)	1054, 1351, 1492, 1938, 2120
BveI	ACCTGC	1 cut(s)	2640
Cac8I	GCNNGC	5 cut(s)	119, 491, 619, 675, 1281
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	2 cut(s)	1530, 2364
Cfr13I	GGNCC	3 cut(s)	723, 1033, 1837
ClaI	ATCGAT	1 cut(s)	2709
CseI	GACGC	4 cut(s)	288, 523, 860, 944
CsiI	ACCWGGT	1 cut(s)	1771
Csp6I	GTAC	8 cut(s)	133, 304, 382, 496, 772, 1694, 1750, 2212
CviQI	GTAC	8 cut(s)	133, 304, 382, 496, 772, 1694, 1750, 2212
DdeI	CTNAG	6 cut(s)	138, 368, 634, 654, 858, 2046
DpnI	GATC	9 cut(s)	7, 505, 564, 1590, 1722, 2091, 2178, 2339, 2898
DpnII	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
DraI	TTTAAA	2 cut(s)	1713, 2386
DraIII	CACNNNGTG	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	1950
Eam1104I	CTCTTC	7 cut(s)	8, 582, 738, 2371, 2547, 2571, 2642
Eam1105I	GACNNNNNGTC	1 cut(s)	1950
EarI	CTCTTC	7 cut(s)	8, 582, 738, 2371, 2547, 2571, 2642
EciI	GGCGGA	2 cut(s)	144, 499
Ecl136II	GAGCTC	1 cut(s)	2515
Eco130I	CCWWGG	2 cut(s)	678, 2615
Eco24I	GRGCYC	1 cut(s)	2517
Eco31I	GGTCTC	2 cut(s)	1247, 1903
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	2 cut(s)	1033, 1837
Eco53kI	GAGCTC	1 cut(s)	2515
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	2 cut(s)	566, 2109
Eco91I	GGTNACC	1 cut(s)	1126
EcoICRI	GAGCTC	1 cut(s)	2515
EcoO65I	GGTNACC	1 cut(s)	1126
EcoRII	CCWGG	2 cut(s)	1122, 1771
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	2 cut(s)	678, 2615
EcoT22I	ATGCAT	2 cut(s)	239, 1412
EcoT38I	GRGCYC	1 cut(s)	2517
ErhI	CCWWGG	2 cut(s)	678, 2615
FalI	AAGNNNNNCTT	6 cut(s)	1739, 1771, 2379, 2411, 2667, 2699
FaqI	GGGAC	1 cut(s)	1058
FauI	CCCGC	2 cut(s)	552, 2580
FauNDI	CATATG	1 cut(s)	2755
FblI	GTMKAC	1 cut(s)	2065
FokI	GGATG	3 cut(s)	422, 776, 1949
FriOI	GRGCYC	1 cut(s)	2517
FspBI	CTAG	5 cut(s)	1433, 1691, 1947, 2426, 2439
GlaI	GCGC	2 cut(s)	1529, 2363
GsuI	CTGGAG	3 cut(s)	447, 1099, 1628
HaeIII	GGCC	3 cut(s)	724, 908, 2734
HapII	CCGG	3 cut(s)	756, 1309, 1384
HgaI	GACGC	4 cut(s)	288, 523, 860, 944
HhaI	GCGC	2 cut(s)	1530, 2364
Hin6I	GCGC	2 cut(s)	1528, 2362
HinP1I	GCGC	2 cut(s)	1528, 2362
HincII	GTYRAC	3 cut(s)	97, 2066, 2502
HindII	GTYRAC	3 cut(s)	97, 2066, 2502
HindIII	AAGCTT	1 cut(s)	1812
HpaII	CCGG	3 cut(s)	756, 1309, 1384
HphI	GGTGA	5 cut(s)	475, 523, 949, 1361, 2271
Hpy166II	GTNNAC	4 cut(s)	97, 121, 2066, 2502
Hpy8I	GTNNAC	4 cut(s)	97, 121, 2066, 2502
Hpy99I	CGWCG	3 cut(s)	128, 304, 854
HpyAV	CCTTC	7 cut(s)	177, 208, 859, 880, 1217, 1267, 2455
HpyCH4III	ACNGT	7 cut(s)	292, 643, 1049, 1291, 1487, 1885, 1933
HpyCH4IV	ACGT	4 cut(s)	126, 147, 337, 1399
HpyF3I	CTNAG	6 cut(s)	138, 368, 634, 654, 858, 2046
HpySE526I	ACGT	4 cut(s)	126, 147, 337, 1399
HspAI	GCGC	2 cut(s)	1528, 2362
Kpn2I	TCCGGA	2 cut(s)	755, 1308
Kzo9I	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
LguI	GCTCTTC	2 cut(s)	2371, 2642
LmnI	GCTCC	5 cut(s)	52, 486, 610, 844, 1624
Lsp1109I	GCAGC	7 cut(s)	53, 56, 841, 2342, 2737, 2885, 2966
LweI	GCATC	4 cut(s)	1177, 1446, 1888, 2593
MabI	ACCWGGT	1 cut(s)	1771
MaeI	CTAG	5 cut(s)	1433, 1691, 1947, 2426, 2439
MaeII	ACGT	4 cut(s)	126, 147, 337, 1399
MalI	GATC	9 cut(s)	7, 505, 564, 1590, 1722, 2091, 2178, 2339, 2898
MboI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
MfeI	CAATTG	1 cut(s)	1523
MflI	RGATCY	4 cut(s)	5, 562, 1720, 2176
MhlI	GDGCHC	3 cut(s)	123, 648, 2517
MlyI	GAGTC	3 cut(s)	29, 260, 2071
MmeI	TCCRAC	3 cut(s)	48, 873, 1011
Mph1103I	ATGCAT	2 cut(s)	239, 1412
MroI	TCCGGA	2 cut(s)	755, 1308
MroXI	GAANNNNTTC	1 cut(s)	2853
MslI	CAYNNNNRTG	2 cut(s)	599, 1415
MspA1I	CMGCKG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	2396
MspI	CCGG	3 cut(s)	756, 1309, 1384
MspR9I	CCNGG	3 cut(s)	1124, 1385, 1773
MunI	CAATTG	1 cut(s)	1523
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	1124, 1773
MvnI	CGCG	2 cut(s)	308, 517
NciI	CCSGG	1 cut(s)	1385
NdeI	CATATG	1 cut(s)	2755
NdeII	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
NlaIV	GGNNCC	3 cut(s)	7, 354, 606
NmuCI	GTSAC	2 cut(s)	511, 1843
NsiI	ATGCAT	2 cut(s)	239, 1412
NspI	RCATGY	4 cut(s)	493, 559, 1279, 1513
PaeI	GCATGC	1 cut(s)	493
PaeR7I	CTCGAG	2 cut(s)	566, 2109
PciSI	GCTCTTC	2 cut(s)	2371, 2642
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	2853
PfeI	GAWTC	7 cut(s)	1183, 1519, 1643, 1919, 2164, 2197, 2903
Pfl23II	CGTACG	1 cut(s)	303
PflFI	GACNNNGTC	3 cut(s)	968, 1841, 2945
PflMI	CCANNNNNTGG	1 cut(s)	1077
PleI	GAGTC	3 cut(s)	29, 259, 2070
PpsI	GAGTC	3 cut(s)	29, 259, 2070
PshBI	ATTAAT	1 cut(s)	2052
PsiI	TTATAA	1 cut(s)	1652
Psp124BI	GAGCTC	1 cut(s)	2517
Psp6I	CCWGG	2 cut(s)	1122, 1771
PspEI	GGTNACC	1 cut(s)	1126
PspGI	CCWGG	2 cut(s)	1122, 1771
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	7, 354, 606
PspPI	GGNCC	3 cut(s)	723, 1033, 1837
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	4 cut(s)	5, 562, 1720, 2176
PsyI	GACNNNGTC	3 cut(s)	968, 1841, 2945
RsaI	GTAC	8 cut(s)	134, 305, 383, 497, 773, 1695, 1751, 2213
RsaNI	GTAC	8 cut(s)	133, 304, 382, 496, 772, 1694, 1750, 2212
RseI	CAYNNNNRTG	2 cut(s)	599, 1415
SacI	GAGCTC	1 cut(s)	2517
SalI	GTCGAC	1 cut(s)	2064
SapI	GCTCTTC	2 cut(s)	2371, 2642
Sau3AI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2089, 2176, 2337, 2896
Sau96I	GGNCC	3 cut(s)	723, 1033, 1837
ScaI	AGTACT	1 cut(s)	1751
SchI	GAGTC	3 cut(s)	29, 260, 2071
ScrFI	CCNGG	3 cut(s)	1124, 1385, 1773
SduI	GDGCHC	3 cut(s)	123, 648, 2517
SexAI	ACCWGGT	1 cut(s)	1771
SfaNI	GCATC	4 cut(s)	1177, 1446, 1888, 2593
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	2 cut(s)	566, 2109
SinI	GGWCC	2 cut(s)	1033, 1837
SlaI	CTCGAG	2 cut(s)	566, 2109
SmiMI	CAYNNNNRTG	2 cut(s)	599, 1415
SmlI	CTYRAG	6 cut(s)	566, 1628, 2109, 2300, 2396, 2684
SmoI	CTYRAG	6 cut(s)	566, 1628, 2109, 2300, 2396, 2684
SphI	GCATGC	1 cut(s)	493
SsiI	CCGC	9 cut(s)	155, 158, 161, 164, 484, 559, 909, 1818, 2587
SspMI	CTAG	5 cut(s)	1433, 1691, 1947, 2426, 2439
SstI	GAGCTC	1 cut(s)	2517
StyD4I	CCNGG	3 cut(s)	1122, 1383, 1771
StyI	CCWWGG	2 cut(s)	678, 2615
TaaI	ACNGT	7 cut(s)	292, 643, 1049, 1291, 1487, 1885, 1933
TaiI	ACGT	4 cut(s)	129, 150, 340, 1402
TatI	WGTACW	5 cut(s)	381, 495, 771, 1693, 1749
TauI	GCSGC	4 cut(s)	160, 163, 166, 911
TfiI	GAWTC	7 cut(s)	1183, 1519, 1643, 1919, 2164, 2197, 2903
TscAI	CASTG	5 cut(s)	1054, 1351, 1492, 1938, 2127
TseFI	GTSAC	2 cut(s)	511, 1843
TseI	GCWGC	7 cut(s)	41, 44, 854, 2330, 2750, 2873, 2954
Tsp45I	GTSAC	2 cut(s)	511, 1843
TspGWI	ACGGA	3 cut(s)	244, 488, 728
TspRI	CASTG	5 cut(s)	1054, 1351, 1492, 1938, 2127
Tth111I	GACNNNGTC	3 cut(s)	968, 1841, 2945
Van91I	CCANNNNNTGG	1 cut(s)	1077
Vha464I	CTTAAG	1 cut(s)	2396
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	1033, 1837
VspI	ATTAAT	1 cut(s)	2052
XapI	RAATTY	6 cut(s)	191, 659, 1313, 1552, 2777, 2909
XceI	RCATGY	4 cut(s)	493, 559, 1279, 1513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1603
XhoI	CTCGAG	2 cut(s)	566, 2109
XmiI	GTMKAC	1 cut(s)	2065
XmnI	GAANNNNTTC	1 cut(s)	2853
XspI	CTAG	5 cut(s)	1433, 1691, 1947, 2426, 2439
ZrmI	AGTACT	1 cut(s)	1751
Zsp2I	ATGCAT	2 cut(s)	239, 1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.