RchiOBHm_Chr7g0229281

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
52808294 .. 52809312
1019 bp
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UTR
Exon/CDS
Intron
PRQ20539

Sequence Viewer

Length: 213 bp
ATGATTGAAGCAATAGTTTGCAAAGGTTTTTCTGCAACTGCTGCTGCAGGCTTCTATTGGGGTGCCAAGGTCGTCACCAAACTTGCGCAGTCCGAGTCCATCCAAGCTGCTGTGCTGTTACATCCTTCATTTATTACGGTTGATAGCTCTGTGAAGATATCTCCAAAAGTTGCACATGGTTGGGCTGTGTGGTACGATGTTGACATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.53

Weight (kDa)

7.9

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 62
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 2 cut(s) 107, 147
AluI AGCT 2 cut(s) 107, 147
ApeKI GCWGC 3 cut(s) 41, 44, 107
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 28, 31, 94
BccI CCATC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 42, 45, 108
BlsI GCNGC 3 cut(s) 43, 46, 109
BmiI GGNNCC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 99, 121
BseXI GCAGC 3 cut(s) 28, 31, 94
BshNI GGYRCC 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 49
BstF5I GGATG 2 cut(s) 99, 121
BstHHI GCGC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 28, 31, 94
BtsCI GGATG 2 cut(s) 99, 121
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 176, 205
CviJI RGCY 4 cut(s) 51, 107, 147, 185
CviKI_1 RGCY 4 cut(s) 51, 107, 147, 185
CviQI GTAC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 66
Eco32I GATATC 1 cut(s) 159
EcoRV GATATC 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 179, 208
FaiI YATR 2 cut(s) 177, 206
FatI CATG 2 cut(s) 175, 204
Fnu4HI GCNGC 3 cut(s) 42, 45, 108
FokI GGATG 2 cut(s) 86, 108
Fsp4HI GCNGC 3 cut(s) 42, 45, 108
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 42, 45, 108
HhaI GCGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 179, 208
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 21, 35, 47, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 179, 208
HspAI GCGC 1 cut(s) 86
LpnPI CCDG 1 cut(s) 33
Lsp1109I GCAGC 3 cut(s) 28, 31, 94
MaeIII GTNAC 2 cut(s) 73, 117
MboII GAAGA 1 cut(s) 166
MlyI GAGTC 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 179, 208
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 73
NsbI TGCGCA 1 cut(s) 87
PkrI GCNGC 3 cut(s) 43, 46, 109
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 49
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 3 cut(s) 42, 45, 108
SchI GAGTC 1 cut(s) 104
SetI ASST 4 cut(s) 28, 72, 109, 149
SfcI CTRYAG 1 cut(s) 45
SgeI CNNG 6 cut(s) 60, 79, 95, 106, 116, 188
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 139
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 3 cut(s) 41, 44, 107
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.