Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01027

Orthogroup ID

OG0018207

Physical Location & Seq

Genomic Coordinates Forward (+)

69101 .. 73395

Gene Structure 4295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACCACTCGAGTACTAAAACTAACAAATGGCTCGAGCGGAGGGAGATCTAAAACTGAAAGTGAAATTCCCCTTCCTCACTCCGCAAAGCTCTCTGCCAGTCTGCCTCATTCTCCTATTATGGAGAATGGGCCTGCTACTATGGACTCTCACTGTGGGTCAGACTGTGCTGAAAAATTTGGAGGTCTTAATGTCTGTGTCACAGGGTCTCCTAATCCCAAGCGTGCTATTCTTCTTATTTCTGGTGTTTTTGGAAGCGGGGCAGGAAGAGTTGCAACTTCTGGATTCTGTGCGGTAGTACCGGACTTCTTCTATGGAGATCCATTTGGATTTGAAGATGCAAAATTACTGATTGAAGCTCTGATAGGCAAAGGTTTTTCTGCAATTGGAGCTGCAGGCTTCTGTTGGGGTGTCCATCAAGCTTCTGTGCTGTTATATCCGTCATTTATTTCTGTGATGATATTGAGGGTATGGGTTCCACTACTTAAATGGGTTAAATCTCCAATTGCCATACTAGGAGCTGAGTTTGACATTGCACATGGTTGGGTTGTGAGGTACGATGTTGATAATGAAGGACCTGCAAAGAGCGCAGAGGAAGCTCATAATGACATGTTGCAGGGGTTTGCTAAACATGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

213

Amino Acids

22.55

Weight (kDa)

6.15

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229281 RchiOBHm_Chr7g0229401 RchiOBHm_Chr7g0229461 RchiOBHm_Chr7g0229541 RchiOBHm_Chr7g0229721 RchiOBHm_Chr7g0229771
rosa_multiflora	Rmu_sc0000693.1_g000034 Rmu_sc0000693.1_g000056
rosa_samantha	Rh7AG408400
rosa_wichuraiana	Rw0G018610 Rw0G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	4 cut(s)	39, 84, 258, 293
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	66, 176
AfaI	GTAC	3 cut(s)	15, 300, 557
AflIII	ACRYGT	2 cut(s)	609, 631
AgsI	TTSAA	2 cut(s)	335, 356
AluBI	AGCT	6 cut(s)	91, 359, 392, 422, 521, 599
AluI	AGCT	6 cut(s)	91, 359, 392, 422, 521, 599
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	314
Ama87I	CYCGRG	2 cut(s)	9, 34
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	2 cut(s)	66, 176
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	131, 575
AvaI	CYCGRG	2 cut(s)	9, 34
AvaII	GGWCC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	586
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	2 cut(s)	9, 34
BmgT120I	GGNCC	2 cut(s)	131, 575
BmiI	GGNNCC	1 cut(s)	477
BmsI	GCATC	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	531
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	133
BsiHKCI	CYCGRG	2 cut(s)	9, 34
BsiSI	CCGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	213
BsoBI	CYCGRG	2 cut(s)	9, 34
Bsp143I	GATC	2 cut(s)	47, 319
BspACI	CCGC	4 cut(s)	39, 84, 258, 293
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	47, 319
Bst4CI	ACNGT	2 cut(s)	155, 167
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	135, 225, 397
BstDEI	CTNAG	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	2 cut(s)	50, 322
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	47, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 587, 596
BstNSI	RCATGY	2 cut(s)	613, 635
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	47, 319
BstYI	RGATCY	2 cut(s)	47, 319
BsuRI	GGCC	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	3 cut(s)	135, 225, 397
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	131, 575
Csp6I	GTAC	3 cut(s)	14, 299, 556
CviAII	CATG	3 cut(s)	539, 610, 632
CviJI	RGCY	9 cut(s)	33, 91, 133, 359, 392, 399, 422, 521, 599
CviKI_1	RGCY	9 cut(s)	33, 91, 133, 359, 392, 399, 422, 521, 599
CviQI	GTAC	3 cut(s)	14, 299, 556
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	2 cut(s)	49, 321
DpnII	GATC	2 cut(s)	47, 319
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	2 cut(s)	9, 34
EcoO109I	RGGNCCY	1 cut(s)	575
FaeI	CATG	3 cut(s)	542, 613, 635
FatI	CATG	3 cut(s)	538, 609, 631
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	3 cut(s)	542, 613, 635
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	146, 285
HpaII	CCGG	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	163, 363
Hpy188III	TCNNGA	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	83, 566
HpyCH4III	ACNGT	2 cut(s)	155, 167
HpyCH4V	TGCA	7 cut(s)	275, 341, 383, 395, 536, 581, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 587, 596
HpyF3I	CTNAG	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	542, 613, 635
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	47, 319
LmnI	GCTCC	2 cut(s)	389, 518
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	49, 321
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	2 cut(s)	47, 319
MboII	GAAGA	4 cut(s)	224, 279, 301, 347
MfeI	CAATTG	2 cut(s)	384, 504
MflI	RGATCY	2 cut(s)	47, 319
MluCI	AATT	5 cut(s)	66, 176, 344, 384, 504
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	35, 87, 117, 176, 459, 546, 586
MseI	TTAA	3 cut(s)	189, 486, 495
MspI	CCGG	1 cut(s)	302
MunI	CAATTG	2 cut(s)	384, 504
MwoI	GCNNNNNNNGC	3 cut(s)	389, 587, 596
NdeII	GATC	2 cut(s)	47, 319
NlaIII	CATG	3 cut(s)	542, 613, 635
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	2 cut(s)	613, 635
PaeR7I	CTCGAG	2 cut(s)	9, 34
PciI	ACATGT	2 cut(s)	609, 631
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	575
PscI	ACATGT	2 cut(s)	609, 631
Psp5II	RGGWCCY	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	2 cut(s)	131, 575
PspPPI	RGGWCCY	1 cut(s)	575
PspXI	VCTCGAGB	2 cut(s)	9, 34
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	47, 319
RsaI	GTAC	3 cut(s)	15, 300, 557
RsaNI	GTAC	3 cut(s)	14, 299, 556
SaqAI	TTAA	3 cut(s)	189, 486, 495
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	47, 319
Sau96I	GGNCC	2 cut(s)	131, 575
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	2 cut(s)	9, 34
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	2 cut(s)	9, 34
SmlI	CTYRAG	2 cut(s)	9, 34
SmoI	CTYRAG	2 cut(s)	9, 34
Sse9I	AATT	5 cut(s)	66, 176, 344, 384, 504
SsiI	CCGC	4 cut(s)	39, 84, 258, 293
SspMI	CTAG	1 cut(s)	515
TaaI	ACNGT	2 cut(s)	155, 167
TaqI	TCGA	2 cut(s)	10, 35
TasI	AATT	5 cut(s)	66, 176, 344, 384, 504
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	3 cut(s)	189, 486, 495
Tru9I	TTAA	3 cut(s)	189, 486, 495
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	2 cut(s)	66, 176
XceI	RCATGY	2 cut(s)	613, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XhoI	CTCGAG	2 cut(s)	9, 34
XspI	CTAG	1 cut(s)	515
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.