Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018207

Physical Location & Seq

Genomic Coordinates Forward (+)

53018056 .. 53021244

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20554

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCAGGCCCTCAGTGCTGTTTTTACTCGCCAGTTATCAACACAAGCTGTGGGTCAGACTGTGCTGAAAAATTTGGAGGTCTTAATGTCTGTGTCACAGGGTCTCCTAATCCCAAGCGTGCTATTCTTCTTATTTCTGGTGACAATAACAGGCCTCTAGCAGTCTGGTTAAAAGATCATGGAACGGGATTTGAAGATGCAAAATTACTGATTGAAGCTCTGATAGGCAAAGGTTTTTCTGCAATTGGAGCTGCAGGCTTCTGTTGGGGTGCCAAGATCGTGACTGCACTTGCGAAATCTGAGTCCATACAAGCTTCTGTGCTGTTATATCCGTCATTTATTTCTGTGATGATATTGAGGGTTGATAGCTACGTGAAGATATTTCCAAAAGTTGCACATGGTTGGGTTGTGAGGTACGATGTTGATAATGAAGGAGCTGCAAAGAGTGCAGAGGAAGCTCATAATGACATGTTGCAGGGGTTTGCTAAACATGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

166

Amino Acids

17.74

Weight (kDa)

6.41

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229281 RchiOBHm_Chr7g0229401 RchiOBHm_Chr7g0229461 RchiOBHm_Chr7g0229541 RchiOBHm_Chr7g0229721 RchiOBHm_Chr7g0229771
rosa_multiflora	Rmu_sc0000693.1_g000034 Rmu_sc0000693.1_g000056
rosa_samantha	Rh7AG408400
rosa_wichuraiana	Rw0G018610 Rw0G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	416
AflIII	ACRYGT	2 cut(s)	468, 490
AgsI	TTSAA	2 cut(s)	194, 215
AluBI	AGCT	7 cut(s)	48, 218, 251, 314, 369, 437, 458
AluI	AGCT	7 cut(s)	48, 218, 251, 314, 369, 437, 458
Alw26I	GTCTC	1 cut(s)	108
AoxI	GGCC	2 cut(s)	7, 152
ApeKI	GCWGC	2 cut(s)	251, 437
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	238, 424
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	252, 438
BlsI	GCNGC	2 cut(s)	253, 439
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bse1I	ACTGG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	26, 291
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	238, 424
BsgI	GTGCAG	2 cut(s)	270, 468
BshFI	GGCC	2 cut(s)	9, 154
BshNI	GGYRCC	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	9, 154
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	175, 276
BspANI	GGCC	2 cut(s)	9, 154
BspCNI	CTCAG	2 cut(s)	25, 292
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	175, 276
Bst4CI	ACNGT	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	120, 256
BstDEI	CTNAG	2 cut(s)	12, 300
BstKTI	GATC	2 cut(s)	178, 279
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	175, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 248, 446, 455
BstNSI	RCATGY	2 cut(s)	472, 494
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	238, 424
BsuRI	GGCC	2 cut(s)	9, 154
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	120, 256
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	179, 398, 469, 491
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	12, 300
DpnI	GATC	2 cut(s)	177, 278
DpnII	GATC	2 cut(s)	175, 276
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	8
FaeI	CATG	4 cut(s)	182, 401, 472, 494
FaiI	YATR	7 cut(s)	180, 308, 328, 399, 462, 470, 492
FatI	CATG	4 cut(s)	178, 397, 468, 490
Fnu4HI	GCNGC	2 cut(s)	252, 438
Fsp4HI	GCNGC	2 cut(s)	252, 438
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	252, 438
HaeIII	GGCC	2 cut(s)	9, 154
Hin1II	CATG	4 cut(s)	182, 401, 472, 494
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	58, 222, 301
Hpy188III	TCNNGA	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	8 cut(s)	200, 242, 254, 287, 395, 440, 449, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 248, 446, 455
HpyF3I	CTNAG	2 cut(s)	12, 300
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	182, 401, 472, 494
Kzo9I	GATC	2 cut(s)	175, 276
LmnI	GCTCC	2 cut(s)	248, 434
LpnPI	CCDG	7 cut(s)	45, 84, 123, 136, 151, 240, 461
Lsp1109I	GCAGC	2 cut(s)	238, 424
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	94, 140, 280
MalI	GATC	2 cut(s)	177, 278
MboI	GATC	2 cut(s)	175, 276
MboII	GAAGA	3 cut(s)	119, 206, 388
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	3 cut(s)	71, 203, 243
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	6 cut(s)	21, 71, 165, 351, 405, 445
MseI	TTAA	2 cut(s)	84, 170
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	15, 248, 446, 455
NdeII	GATC	2 cut(s)	175, 276
NlaIII	CATG	4 cut(s)	182, 401, 472, 494
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	3 cut(s)	94, 140, 280
NspI	RCATGY	2 cut(s)	472, 494
PceI	AGGCCT	1 cut(s)	154
PciI	ACATGT	2 cut(s)	468, 490
PkrI	GCNGC	2 cut(s)	253, 439
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	373
PscI	ACATGT	2 cut(s)	468, 490
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	84, 170
SatI	GCNGC	2 cut(s)	252, 438
Sau3AI	GATC	2 cut(s)	175, 276
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	71, 203, 243
SseBI	AGGCCT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	375
TasI	AATT	3 cut(s)	71, 203, 243
Tru1I	TTAA	2 cut(s)	84, 170
Tru9I	TTAA	2 cut(s)	84, 170
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	3 cut(s)	94, 140, 280
TseI	GCWGC	2 cut(s)	251, 437
Tsp45I	GTSAC	3 cut(s)	94, 140, 280
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	2 cut(s)	472, 494
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.