Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000693.1

Orthogroup ID

OG0018207

Physical Location & Seq

Genomic Coordinates Forward (+)

277225 .. 280560

Gene Structure 3336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000693.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgggcctgctactatggactctcactcttccagatcatcacctccctcatttcaatccaggcccatctgcatcatcacattcactggtgaaacttgcaggaagagttgccacttctggattctgtgttgtagtcccggacttcatctacggagacccatttctgtatgacaattacaggccttttgcaggctggttaaaagatatggaacgcattgatcaggataagggctttaaagatgcaaaattagcgattgacgctctgacaggcaaaggtttttctgcaactgctgctgcaggcttctattggggtgccaaggtcgtcaccaaacttgcgcagtccgagtccatccaagctgctgttgatagctctgtgaagatatctcaaaaagttgcacatggttgggctgtgtggtacgatgttgaaatgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

144

Amino Acids

15.76

Weight (kDa)

6.96

Isoelectric Point (pI)

21.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229281 RchiOBHm_Chr7g0229401 RchiOBHm_Chr7g0229461 RchiOBHm_Chr7g0229541 RchiOBHm_Chr7g0229721 RchiOBHm_Chr7g0229771
rosa_multiflora	Rmu_sc0000693.1_g000034 Rmu_sc0000693.1_g000056
rosa_samantha	Rh7AG408400
rosa_wichuraiana	Rw0G018610 Rw0G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	55, 425
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	356, 369
AluI	AGCT	2 cut(s)	356, 369
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	3 cut(s)	4, 61, 179
ApeKI	GCWGC	3 cut(s)	290, 293, 356
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	4, 62
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	32, 100, 316
BanI	GGYRCC	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	277, 280, 343
BccI	CCATC	2 cut(s)	73, 356
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	291, 294, 357
BlsI	GCNGC	3 cut(s)	292, 295, 358
Bme1390I	CCNGG	2 cut(s)	60, 137
BmgT120I	GGNCC	2 cut(s)	4, 62
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	60, 137
BmsI	GCATC	2 cut(s)	80, 229
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	277, 280, 343
BshFI	GGCC	3 cut(s)	6, 63, 181
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	6, 63, 181
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	34, 217
BspANI	GGCC	3 cut(s)	6, 63, 181
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	34, 217
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	33, 97
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	8, 190, 298
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	37, 220
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	34, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 257, 290
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	58, 135
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	277, 280, 343
BsuRI	GGCC	3 cut(s)	6, 63, 181
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	8, 190, 298
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	4, 62
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	9 cut(s)	6, 63, 181, 192, 231, 300, 356, 369, 407
CviKI_1	RGCY	9 cut(s)	6, 63, 181, 192, 231, 300, 356, 369, 407
CviQI	GTAC	1 cut(s)	415
DpnI	GATC	2 cut(s)	36, 219
DpnII	GATC	2 cut(s)	34, 217
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	33, 97
EarI	CTCTTC	2 cut(s)	33, 97
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	401
FaiI	YATR	4 cut(s)	16, 168, 206, 399
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	291, 294, 357
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	291, 294, 357
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	3 cut(s)	291, 294, 357
HaeIII	GGCC	3 cut(s)	6, 63, 181
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	401
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	3 cut(s)	19, 120, 344
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	32, 100, 316
Hpy188I	TCNGA	2 cut(s)	264, 343
Hpy188III	TCNNGA	3 cut(s)	32, 117, 221
HpyCH4V	TGCA	7 cut(s)	71, 98, 188, 242, 284, 296, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 257, 290
Hsp92II	CATG	1 cut(s)	401
HspAI	GCGC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	34, 217
Lsp1109I	GCAGC	3 cut(s)	277, 280, 343
LweI	GCATC	2 cut(s)	80, 229
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	36, 219
MboI	GATC	2 cut(s)	34, 217
MboII	GAAGA	3 cut(s)	20, 114, 388
MluCI	AATT	2 cut(s)	172, 245
MlyI	GAGTC	2 cut(s)	13, 353
MnlI	CCTC	2 cut(s)	53, 57
MseI	TTAA	2 cut(s)	197, 234
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	60, 137
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	248, 257, 290
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	34, 217
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	322
NsbI	TGCGCA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	292, 295, 358
PleI	GAGTC	2 cut(s)	13, 352
PpsI	GAGTC	2 cut(s)	13, 352
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	4, 62
PstI	CTGCAG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	197, 234
SatI	GCNGC	3 cut(s)	291, 294, 357
Sau3AI	GATC	2 cut(s)	34, 217
Sau96I	GGNCC	2 cut(s)	4, 62
SchI	GAGTC	2 cut(s)	13, 353
ScrFI	CCNGG	2 cut(s)	60, 137
SetI	ASST	5 cut(s)	45, 277, 321, 358, 371
SfaNI	GCATC	2 cut(s)	80, 229
SfcI	CTRYAG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	172, 245
SseBI	AGGCCT	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	58, 135
StyI	CCWWGG	1 cut(s)	315
TasI	AATT	2 cut(s)	172, 245
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	197, 234
Tru9I	TTAA	2 cut(s)	197, 234
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	290, 293, 356
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.