Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000693.1

Orthogroup ID

OG0018207

Physical Location & Seq

Genomic Coordinates Forward (+)

166007 .. 171119

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000693.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgcaaagcacacatggtctcacttcagtgatagacacctcaaaccactatacatgttcccgtctctggttgtcgctaagttattctcaagttcttcttcctgcaattcctttcattgcagtcatcttctccggctttctccatccaatcttacaggctttgttttgtgatttgctccaaagggcgagtttcataatgttcttcaccaacaatccgaagttggaccatagaagagctgccacttctggattctgtgttgtagtccgggacttcatctacggagacccatttgtgtatgacaattacaggcctctagcagtctggttaaaagatcatgaaacggataaggtctttaaagatacaaaattagcgattgacgctctgacaggcaaaggtttttctgcaactggtgctgcaggcttctattggggtgccaaggtcgtcatcgaacttgcgaagtttgagtccatccaagctgctgttgatagctatgtgaagatatctccaaaagttgcacatggttgggctgtgcggtacgatgttgaagatgaagtagctgcatttaaagagtgcagaggaagcatatatgacgagttgcagtggttgctaagcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

205

Amino Acids

23.09

Weight (kDa)

6.28

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229281 RchiOBHm_Chr7g0229401 RchiOBHm_Chr7g0229461 RchiOBHm_Chr7g0229541 RchiOBHm_Chr7g0229721 RchiOBHm_Chr7g0229771
rosa_multiflora	Rmu_sc0000693.1_g000034 Rmu_sc0000693.1_g000056
rosa_samantha	Rh7AG408400
rosa_wichuraiana	Rw0G018610 Rw0G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	545
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	236, 476, 489, 557
AluI	AGCT	4 cut(s)	236, 476, 489, 557
Alw26I	GTCTC	3 cut(s)	23, 68, 276
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	4 cut(s)	236, 413, 476, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	431
BbvI	GCAGC	4 cut(s)	223, 400, 463, 544
BccI	CCATC	2 cut(s)	150, 476
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	3 cut(s)	23, 68, 276
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	4 cut(s)	237, 414, 477, 558
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	4 cut(s)	238, 415, 478, 559
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	266
BsaI	GGTCTC	2 cut(s)	23, 276
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	142, 468
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	4 cut(s)	223, 400, 463, 544
BsgI	GTGCAG	1 cut(s)	592
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	132, 265
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	3 cut(s)	23, 68, 276
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	310
Bso31I	GGTCTC	2 cut(s)	23, 276
Bsp143I	GATC	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	608
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	418
BspQI	GCTCTTC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	23, 276
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	226
BstAPI	GCANNNNNTGC	2 cut(s)	410, 604
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	77, 608
BstF5I	GGATG	2 cut(s)	142, 468
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	23, 68, 276
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	377, 410, 579, 604
BstNSI	RCATGY	2 cut(s)	57, 616
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	223, 400, 463, 544
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	142, 468
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	33, 605
Cac8I	GCNNGC	1 cut(s)	418
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	5 cut(s)	14, 54, 335, 518, 613
CviJI	RGCY	9 cut(s)	135, 158, 236, 310, 420, 476, 489, 527, 557
CviKI_1	RGCY	9 cut(s)	135, 158, 236, 310, 420, 476, 489, 527, 557
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	77, 608
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraI	TTTAAA	2 cut(s)	355, 565
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	435
Eco147I	AGGCCT	1 cut(s)	310
Eco31I	GGTCTC	2 cut(s)	23, 276
Eco32I	GATATC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	5 cut(s)	17, 57, 338, 521, 616
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	5 cut(s)	13, 53, 334, 517, 612
Fnu4HI	GCNGC	4 cut(s)	237, 414, 477, 558
FokI	GGATG	2 cut(s)	129, 455
Fsp4HI	GCNGC	4 cut(s)	237, 414, 477, 558
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	4 cut(s)	237, 414, 477, 558
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	2 cut(s)	132, 265
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	5 cut(s)	17, 57, 338, 521, 616
HinfI	GANTC	2 cut(s)	249, 464
HpaII	CCGG	2 cut(s)	132, 265
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	216, 384
Hpy188III	TCNNGA	2 cut(s)	246, 335
HpyCH4V	TGCA	9 cut(s)	4, 104, 119, 404, 416, 515, 560, 573, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	377, 410, 579, 604
HpyF3I	CTNAG	2 cut(s)	77, 608
Hsp92II	CATG	5 cut(s)	17, 57, 338, 521, 616
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	4 cut(s)	223, 400, 463, 544
MaeI	CTAG	1 cut(s)	314
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	7 cut(s)	86, 89, 118, 193, 243, 508, 557
MluCI	AATT	3 cut(s)	105, 301, 365
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	49, 321, 569
MseI	TTAA	3 cut(s)	326, 354, 564
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	2 cut(s)	132, 265
MspR9I	CCNGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	4 cut(s)	377, 410, 579, 604
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	5 cut(s)	17, 57, 338, 521, 616
NlaIV	GGNNCC	1 cut(s)	433
NspI	RCATGY	2 cut(s)	57, 616
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	310
PciI	ACATGT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	4 cut(s)	238, 415, 478, 559
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	418
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	326, 354, 564
SatI	GCNGC	4 cut(s)	237, 414, 477, 558
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	8 cut(s)	41, 238, 351, 397, 441, 478, 491, 559
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	105, 301, 365
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	435
TaqI	TCGA	1 cut(s)	447
TasI	AATT	3 cut(s)	105, 301, 365
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	326, 354, 564
Tru9I	TTAA	3 cut(s)	326, 354, 564
TscAI	CASTG	2 cut(s)	33, 605
TseI	GCWGC	4 cut(s)	236, 413, 476, 557
TspDTI	ATGAA	5 cut(s)	103, 181, 262, 351, 564
TspGWI	ACGGA	2 cut(s)	294, 356
TspRI	CASTG	2 cut(s)	33, 605
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	2 cut(s)	57, 616
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.