Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018207

Physical Location & Seq

Genomic Coordinates Forward (+)

53098334 .. 53099251

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATTGAAGCAATTGTTTGTGCTGTTGAAATCTGGAAACTTGCAGGAAGAGTTGCCACTTCTGGATTCTGTGTTGTAGTCCCGGACTTCATCTACGGAGATCCATTTGTGTATGACAATTACAGGCCTCTAGCAGGCTGGTTAAAAGATATGGAACAGTTCGATAAGGGCTTTACAGATGCAAAATTAGCGATTGACGCTCTGACAGACAAAGGTTTTTCTGCAACTCCTGCTGCAGGCTTCTATTGGAGTGCCAAGGTCATCACCAAACTTGCGCAGTCCGAGTCCATCCAAGCTGCCGTTGATAGCTCTGTGAAGATATCTCCAAAAGTTGCACATGGTTGGGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

117

Amino Acids

12.69

Weight (kDa)

5.22

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229281 RchiOBHm_Chr7g0229401 RchiOBHm_Chr7g0229461 RchiOBHm_Chr7g0229541 RchiOBHm_Chr7g0229721 RchiOBHm_Chr7g0229771
rosa_multiflora	Rmu_sc0000693.1_g000034 Rmu_sc0000693.1_g000056
rosa_samantha	Rh7AG408400
rosa_wichuraiana	Rw0G018610 Rw0G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	276
AclWI	GGATC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	134, 236
AgsI	TTSAA	2 cut(s)	8, 29
AluBI	AGCT	2 cut(s)	296, 309
AluI	AGCT	2 cut(s)	296, 309
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	233, 296
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	220, 283
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	234, 297
BlsI	GCNGC	2 cut(s)	235, 298
Bme1390I	CCNGG	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 236
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	134, 236
BseXI	GCAGC	2 cut(s)	220, 283
BshFI	GGCC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	134, 236
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	136, 238
BstENI	CCTNNNNNAGG	2 cut(s)	132, 234
BstF5I	GGATG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 230
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	220, 283
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	136, 238
CfoI	GCGC	1 cut(s)	277
CseI	GACGC	1 cut(s)	206
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	7 cut(s)	127, 138, 171, 240, 296, 309, 347
CviKI_1	RGCY	7 cut(s)	127, 138, 171, 240, 296, 309, 347
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	2 cut(s)	132, 234
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	341
FaiI	YATR	3 cut(s)	114, 152, 339
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	234, 297
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	234, 297
FspBI	CTAG	1 cut(s)	131
FspI	TGCGCA	1 cut(s)	276
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	234, 297
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	66, 284
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	204, 283
Hpy188III	TCNNGA	2 cut(s)	34, 63
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	44, 182, 224, 236, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 230
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	9 cut(s)	19, 30, 48, 96, 109, 120, 124, 222, 243
Lsp1109I	GCAGC	2 cut(s)	220, 283
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	131
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	60, 328
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	3 cut(s)	12, 118, 185
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 230
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	341
NsbI	TGCGCA	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	235, 298
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	234, 297
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	217, 261, 298, 311
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	12, 118, 185
SseBI	AGGCCT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	12, 118, 185
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	2 cut(s)	233, 296
TspDTI	ATGAA	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	111
XagI	CCTNNNNNAGG	2 cut(s)	132, 234
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.