Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00834

Orthogroup ID

OG0018207

Physical Location & Seq

Genomic Coordinates Reverse (-)

4033 .. 6880

Gene Structure 2848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCAGGCCCTCAGTGCTGTTTTTACTCGCCAGTTATCAACACAAGCTGTGGGTCAGACTGTGCTGAAAAATTTGGAGGTCTTAATGTCTGTGTCACAGGGTCTCCTAATCCCAAGCGTGCTATTCTTCTTATTTCTGGTGTTTTTGAACTAATGCATTTCCACTTAAGGAAGCTTGCAGGAAGAGTTGCAACTTCTGGATTCTGTGCGGTAGTACCGGACTTCTTCTATGGAGATCCATTTGCCATTTATCATGATAAGGGATTTGAAGATGCAAAATTACTGATTGACGCTCTGATAGGCAAAGGTTTTTCTGCAATTGGAGCTGCAGGCTTCTGTTGGGGTGCCAAGATCGTGACTGCACTTGTGAAATCTGAGTCCATACAAGCTTCTGTGCTGTTATATCCGTCATTTATTTCTGTGATGATATTGAGGGTATGGGTTCCACTGCTTAAATGGGTTAAATCTCCAATTGCCATACTAGGAGCTGAGTTTGACATTGCACATGGTTGGGTTGTGAGGTACGATGTTGATAATGAAGGAGCTGCAAAGAGTGCAGAGGAAGCTCATAATGACATGTTGCAGGGGTTTGCTAAGCATGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

202

Amino Acids

21.82

Weight (kDa)

6.29

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018207)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229281 RchiOBHm_Chr7g0229401 RchiOBHm_Chr7g0229461 RchiOBHm_Chr7g0229541 RchiOBHm_Chr7g0229721 RchiOBHm_Chr7g0229771
rosa_multiflora	Rmu_sc0000693.1_g000034 Rmu_sc0000693.1_g000056
rosa_samantha	Rh7AG408400
rosa_wichuraiana	Rw0G018610 Rw0G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	216, 524
AflII	CTTAAG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	2 cut(s)	149, 269
AluBI	AGCT	7 cut(s)	48, 175, 326, 389, 488, 545, 566
AluI	AGCT	7 cut(s)	48, 175, 326, 389, 488, 545, 566
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	326, 545
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	313, 532
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	327, 546
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	2 cut(s)	328, 547
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	346, 444
BmsI	GCATC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	26, 366, 480
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	313, 532
BsgI	GTGCAG	2 cut(s)	345, 576
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	235, 351
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	3 cut(s)	25, 367, 481
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	346, 444
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	235, 351
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	178
BstAFI	CTTAAG	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	120, 177, 331
BstDEI	CTNAG	4 cut(s)	12, 375, 489, 594
BstKTI	GATC	2 cut(s)	238, 354
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	235, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 323, 554, 563
BstNSI	RCATGY	2 cut(s)	580, 602
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	313, 532
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	20, 446
Cac8I	GCNNGC	3 cut(s)	120, 177, 331
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	8
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	215, 523
CviAII	CATG	4 cut(s)	254, 506, 577, 599
CviJI	RGCY	9 cut(s)	9, 48, 175, 326, 333, 389, 488, 545, 566
CviKI_1	RGCY	9 cut(s)	9, 48, 175, 326, 333, 389, 488, 545, 566
CviQI	GTAC	2 cut(s)	215, 523
DdeI	CTNAG	4 cut(s)	12, 375, 489, 594
DpnI	GATC	2 cut(s)	237, 353
DpnII	GATC	2 cut(s)	235, 351
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	4 cut(s)	257, 509, 580, 602
FatI	CATG	4 cut(s)	253, 505, 576, 598
Fnu4HI	GCNGC	2 cut(s)	327, 546
Fsp4HI	GCNGC	2 cut(s)	327, 546
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	2 cut(s)	327, 546
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	257, 509, 580, 602
HindIII	AAGCTT	2 cut(s)	173, 387
HinfI	GANTC	2 cut(s)	201, 377
HpaII	CCGG	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	58, 297, 376
Hpy188III	TCNNGA	3 cut(s)	198, 254, 355
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 323, 554, 563
HpyF3I	CTNAG	4 cut(s)	12, 375, 489, 594
Hsp92II	CATG	4 cut(s)	257, 509, 580, 602
Kzo9I	GATC	2 cut(s)	235, 351
LmnI	GCTCC	3 cut(s)	323, 485, 542
LpnPI	CCDG	8 cut(s)	45, 84, 123, 165, 183, 231, 315, 569
Lsp1109I	GCAGC	2 cut(s)	313, 532
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	94, 355
MalI	GATC	2 cut(s)	237, 353
MboI	GATC	2 cut(s)	235, 351
MboII	GAAGA	4 cut(s)	119, 195, 217, 281
MfeI	CAATTG	2 cut(s)	318, 471
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	4 cut(s)	71, 278, 318, 471
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	21, 71, 426, 513, 553
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	4 cut(s)	84, 167, 453, 462
MspCI	CTTAAG	1 cut(s)	166
MspI	CCGG	1 cut(s)	218
MunI	CAATTG	2 cut(s)	318, 471
MwoI	GCNNNNNNNGC	4 cut(s)	15, 323, 554, 563
NdeII	GATC	2 cut(s)	235, 351
NlaIII	CATG	4 cut(s)	257, 509, 580, 602
NlaIV	GGNNCC	2 cut(s)	346, 444
NmuCI	GTSAC	2 cut(s)	94, 355
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	2 cut(s)	580, 602
PagI	TCATGA	1 cut(s)	253
PciI	ACATGT	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	328, 547
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PscI	ACATGT	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	346, 444
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	216, 524
RsaNI	GTAC	2 cut(s)	215, 523
SaqAI	TTAA	4 cut(s)	84, 167, 453, 462
SatI	GCNGC	2 cut(s)	327, 546
Sau3AI	GATC	2 cut(s)	235, 351
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	386
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	71, 278, 318, 471
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	62
TasI	AATT	4 cut(s)	71, 278, 318, 471
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	4 cut(s)	84, 167, 453, 462
Tru9I	TTAA	4 cut(s)	84, 167, 453, 462
TscAI	CASTG	2 cut(s)	20, 453
TseFI	GTSAC	2 cut(s)	94, 355
TseI	GCWGC	2 cut(s)	326, 545
Tsp45I	GTSAC	2 cut(s)	94, 355
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	20, 453
Vha464I	CTTAAG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	2 cut(s)	580, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.