RchiOBHm_Chr7g0229401

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
52928674 .. 52929412
739 bp
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UTR
Exon/CDS
Intron
PRQ20548

Sequence Viewer

Length: 222 bp
ATGGAACGGTTCGGTAAGGGCTTTAAAGATGCAAAATTAGCGATTGACGCTCTGACAGGCAAAGGTTTTTCTGCAACTGCTGCTGCAGGCTTCTATTGGGATGCCAAGATCGTCACCAAACTTGCGCAGTCCGAGTCCATCCAAGCTGCTGTGCTGTTACATCCTTCATTTATTTCGGTGGATGAGGTATTTTATTCTCTTAAGTTCTTAACTATAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

7.89

Weight (kDa)

8.03

Isoelectric Point (pI)

14.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 126
AflII CTTAAG 1 cut(s) 200
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 80, 83, 146
AspLEI GCGC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 3 cut(s) 67, 70, 133
BccI CCATC 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 84, 213
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 3 cut(s) 81, 84, 147
BlsI GCNGC 3 cut(s) 82, 85, 148
BmsI GCATC 2 cut(s) 19, 91
BseGI GGATG 4 cut(s) 106, 138, 160, 187
BseXI GCAGC 3 cut(s) 67, 70, 133
Bsp143I GATC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 88
BspTI CTTAAG 1 cut(s) 200
BssMI GATC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 88
BstF5I GGATG 4 cut(s) 106, 138, 160, 187
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 80
BstSFI CTRYAG 2 cut(s) 84, 213
BstV1I GCAGC 3 cut(s) 67, 70, 133
BtsCI GGATG 4 cut(s) 106, 138, 160, 187
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 127
CseI GACGC 1 cut(s) 56
CviJI RGCY 3 cut(s) 21, 90, 146
CviKI_1 RGCY 3 cut(s) 21, 90, 146
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DraI TTTAAA 1 cut(s) 25
FaiI YATR 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 81, 84, 147
FokI GGATG 4 cut(s) 113, 125, 147, 194
Fsp4HI GCNGC 3 cut(s) 81, 84, 147
FspI TGCGCA 1 cut(s) 126
GlaI GCGC 1 cut(s) 126
GluI GCNGC 3 cut(s) 81, 84, 147
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 54, 133
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 32, 74, 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 80
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 42, 72
Lsp1109I GCAGC 3 cut(s) 67, 70, 133
LweI GCATC 2 cut(s) 19, 91
MaeIII GTNAC 2 cut(s) 112, 156
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 178
MseI TTAA 3 cut(s) 24, 201, 209
MspCI CTTAAG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 80
NdeII GATC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 82, 85, 148
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 88
SaqAI TTAA 3 cut(s) 24, 201, 209
SatI GCNGC 3 cut(s) 81, 84, 147
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 143
SetI ASST 4 cut(s) 67, 148, 189, 220
SfaNI GCATC 2 cut(s) 19, 91
SfcI CTRYAG 2 cut(s) 84, 213
SgeI CNNG 6 cut(s) 69, 99, 118, 134, 145, 155
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 35
TaaI ACNGT 1 cut(s) 9
TasI AATT 1 cut(s) 35
Tru1I TTAA 3 cut(s) 24, 201, 209
Tru9I TTAA 3 cut(s) 24, 201, 209
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 80, 83, 146
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.