RchiOBHm_Chr7g0229721

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
53277532 .. 53279716
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20580

Sequence Viewer

Length: 339 bp
ATGCATTTCCACTTAAGGAAGCTTGCAGGAAGAGTTGCAACTTCTGGATTCTGTGCGGGATTTGAAGATGCAAAATTACTGATTGACGCTCTGATAGGCAAAGGTTTTTCTGCAATTGGAGCTGCAGGCTTCTGTTGGGGTGCCAAGATCGTGACTGCACTTGCGAAATCTGAGTCCATACAAGCTTCTGTGCTGTTATATCCGTCATTTATTTCTGTGATGATATTGAGGGTTGATAGCTACGTGAAGATATTTCCAAAAGCTGCACATGGTTGGGCTGTGAGGTACGATGTTGATAATGAAGGAGCTGCAAAGAGTGCAGAGGAAGCTCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

11.99

Weight (kDa)

8.98

Isoelectric Point (pI)

24.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AciI CCGC 1 cut(s) 56
AfaI GTAC 1 cut(s) 287
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 7 cut(s) 22, 122, 185, 240, 263, 308, 329
AluI AGCT 7 cut(s) 22, 122, 185, 240, 263, 308, 329
ApeKI GCWGC 3 cut(s) 122, 263, 308
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
BanI GGYRCC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 109, 250, 295
BfmI CTRYAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 3 cut(s) 123, 264, 309
BlsI GCNGC 3 cut(s) 124, 265, 310
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 244
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 109, 250, 295
BsgI GTGCAG 3 cut(s) 141, 249, 339
BshNI GGYRCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 13
BssMI GATC 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 24, 127
BstDEI CTNAG 1 cut(s) 171
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 3 cut(s) 119, 317, 326
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 109, 250, 295
Cac8I GCNNGC 2 cut(s) 24, 127
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 269
CviJI RGCY 9 cut(s) 22, 122, 129, 185, 240, 263, 278, 308, 329
CviKI_1 RGCY 9 cut(s) 22, 122, 129, 185, 240, 263, 278, 308, 329
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 179, 199, 270, 333
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 123, 264, 309
Fsp4HI GCNGC 3 cut(s) 123, 264, 309
GluI GCNGC 3 cut(s) 123, 264, 309
HgaI GACGC 1 cut(s) 95
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 2 cut(s) 20, 183
HinfI GANTC 2 cut(s) 48, 173
Hpy188I TCNGA 2 cut(s) 93, 172
Hpy188III TCNNGA 2 cut(s) 45, 151
HpyAV CCTTC 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 317, 326
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 119, 305
LpnPI CCDG 3 cut(s) 12, 30, 111
Lsp1109I GCAGC 3 cut(s) 109, 250, 295
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 42, 77, 259
MfeI CAATTG 1 cut(s) 114
MluCI AATT 2 cut(s) 74, 114
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 3 cut(s) 222, 276, 316
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 13
MunI CAATTG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 119, 317, 326
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 124, 265, 310
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 123, 264, 309
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 1 cut(s) 182
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 74, 114
SsiI CCGC 1 cut(s) 56
TaiI ACGT 1 cut(s) 246
TasI AATT 2 cut(s) 74, 114
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 3 cut(s) 122, 263, 308
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 192
Vha464I CTTAAG 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.