Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016942

Physical Location & Seq

Genomic Coordinates Reverse (-)

34380989 .. 34381540

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002450

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGTCCTCCATCCCCGATAACCTAACTAGAGACCAATACGTCTACTTGGCCAAGCTCGCAGAGCGCTACGAGGAGATGGGTCCACCTCGGCATCGGAGCTCACCTTCGAGGAGCGCAACCTCTTCTCCGTCGCCTACAAGAACGATCGTCTCTTCGATTGAGCAGAAGGAGGAGGCCCGCAAGAACGGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCCAGGGTTGAGGCCGAGCTCTCTGAGATTCATCGACGACGAATTGGATTTATGTCTCCATTTCGAAGGAGTAGAATCTTCGACTAATTTGCTGAGAATAAGCGAAGATGTGGGGGGGGTGGAGCTCCGGCAGGGTCAATGGCGACATCACTCTCTCCCTCCCTGGCGAAAGTTCACCAGCAAGCCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

138

Amino Acids

15.54

Weight (kDa)

8.89

Isoelectric Point (pI)

72.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016942)

Species	Orthologous Gene IDs
malus_domestica	MD12G1114600.v1.1
rosa_chinensis	RchiOBHm_Chr4g0441031 RchiOBHm_Chr6g0303141 RchiOBHm_Chr7g0223521 RchiOBHm_Chr7g0238701
rosa_laevigata	RLG00000002450 RLG00000009635 RLG00000019449 RLG00000028910 RLG00000034962
rosa_roxburghii	Rroxscaffold_1G00027990
rosa_rugosa	Rorug01G0173000
rosa_samantha	Rh5DG055800 Rh7DG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	223, 383
AluBI	AGCT	4 cut(s)	58, 102, 240, 346
AluI	AGCT	4 cut(s)	58, 102, 240, 346
Alw21I	GWGCWC	4 cut(s)	104, 197, 242, 348
Alw26I	GTCTC	3 cut(s)	27, 157, 281
AlwI	GGATC	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	3 cut(s)	51, 177, 233
AspLEI	GCGC	3 cut(s)	69, 119, 204
AspS9I	GGNCC	2 cut(s)	83, 178
AsuHPI	GGTGA	2 cut(s)	96, 388
AsuII	TTCGAA	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	3 cut(s)	104, 242, 348
BbrPI	CACGTG	1 cut(s)	198
Bbv12I	GWGCWC	4 cut(s)	104, 197, 242, 348
BccI	CCATC	2 cut(s)	20, 73
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	2 cut(s)	225, 385
BcoDI	GTCTC	3 cut(s)	27, 157, 281
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	2 cut(s)	70, 205
Bme1390I	CCNGG	2 cut(s)	225, 385
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	83, 178
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	225, 385
BmsI	GCATC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	89, 224, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
BseBI	CCWGG	2 cut(s)	225, 385
BseDI	CCNNGG	3 cut(s)	89, 224, 383
BseGI	GGATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	236, 305
BseRI	GAGGAG	3 cut(s)	89, 127, 188
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	53, 179, 235
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	4 cut(s)	104, 197, 242, 348
BsiSI	CCGG	1 cut(s)	349
BsmAI	GTCTC	3 cut(s)	27, 157, 281
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	53, 179, 235
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	4 cut(s)	104, 197, 242, 348
Bsp143I	GATC	2 cut(s)	147, 220
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	3 cut(s)	53, 179, 235
BspCNI	CTCAG	2 cut(s)	237, 306
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	89, 224, 383
BssMI	GATC	2 cut(s)	147, 220
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	225, 385
Bst6I	CTCTTC	2 cut(s)	130, 160
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	60, 181, 404
BstDEI	CTNAG	2 cut(s)	245, 314
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	70, 205
BstHHI	GCGC	3 cut(s)	69, 119, 204
BstKTI	GATC	2 cut(s)	150, 223
BstMAI	GTCTC	3 cut(s)	27, 157, 281
BstMBI	GATC	2 cut(s)	147, 220
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 64, 201
BstNI	CCWGG	2 cut(s)	225, 385
BstSCI	CCNGG	2 cut(s)	223, 383
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	53, 179, 235
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	3 cut(s)	60, 181, 404
CfoI	GCGC	3 cut(s)	69, 119, 204
Cfr13I	GGNCC	2 cut(s)	83, 178
Csp6I	GTAC	1 cut(s)	216
CviJI	RGCY	8 cut(s)	53, 58, 102, 179, 235, 240, 346, 406
CviKI_1	RGCY	8 cut(s)	53, 58, 102, 179, 235, 240, 346, 406
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	245, 314
DpnI	GATC	2 cut(s)	149, 222
DpnII	GATC	2 cut(s)	147, 220
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	130, 160
EarI	CTCTTC	2 cut(s)	130, 160
Ecl136II	GAGCTC	3 cut(s)	102, 240, 346
Eco24I	GRGCYC	3 cut(s)	104, 242, 348
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	68
Eco53kI	GAGCTC	3 cut(s)	102, 240, 346
Eco72I	CACGTG	1 cut(s)	198
EcoICRI	GAGCTC	3 cut(s)	102, 240, 346
EcoRII	CCWGG	2 cut(s)	223, 383
EcoT38I	GRGCYC	3 cut(s)	104, 242, 348
Esp3I	CGTCTC	1 cut(s)	157
FaiI	YATR	1 cut(s)	274
FauI	CCCGC	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	45
FriOI	GRGCYC	3 cut(s)	104, 242, 348
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	3 cut(s)	68, 118, 203
HaeII	RGCGCY	2 cut(s)	70, 205
HaeIII	GGCC	3 cut(s)	53, 179, 235
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	3 cut(s)	69, 119, 204
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	3 cut(s)	67, 117, 202
HinP1I	GCGC	3 cut(s)	67, 117, 202
HinfI	GANTC	2 cut(s)	249, 296
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	96, 388
Hpy166II	GTNNAC	3 cut(s)	46, 86, 396
Hpy188I	TCNGA	2 cut(s)	99, 246
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	3 cut(s)	46, 86, 396
Hpy99I	CGWCG	3 cut(s)	136, 260, 263
HpyAV	CCTTC	3 cut(s)	117, 163, 281
HpyCH4IV	ACGT	2 cut(s)	42, 197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 64, 201
HpyF3I	CTNAG	2 cut(s)	245, 314
HpySE526I	ACGT	2 cut(s)	42, 197
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	3 cut(s)	67, 117, 202
Kzo9I	GATC	2 cut(s)	147, 220
LmnI	GCTCC	5 cut(s)	99, 114, 192, 343, 351
LpnPI	CCDG	6 cut(s)	210, 237, 338, 362, 370, 397
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	2 cut(s)	42, 197
MalI	GATC	2 cut(s)	149, 222
MboI	GATC	2 cut(s)	147, 220
MboII	GAAGA	4 cut(s)	117, 147, 291, 338
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	4 cut(s)	104, 197, 242, 348
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	263, 307
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	9 cut(s)	19, 67, 99, 105, 133, 166, 169, 225, 390
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	2 cut(s)	225, 385
MvaI	CCWGG	2 cut(s)	225, 385
MwoI	GCNNNNNNNGC	3 cut(s)	59, 64, 201
NdeII	GATC	2 cut(s)	147, 220
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	2 cut(s)	70, 261
NspV	TTCGAA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	249, 296
Ple19I	CGATCG	1 cut(s)	150
PmaCI	CACGTG	1 cut(s)	198
PmlI	CACGTG	1 cut(s)	198
Ppu21I	YACGTR	1 cut(s)	198
Psp124BI	GAGCTC	3 cut(s)	104, 242, 348
Psp6I	CCWGG	2 cut(s)	223, 383
PspCI	CACGTG	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	223, 383
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	83, 178
PsuI	RGATCY	1 cut(s)	220
PvuI	CGATCG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SacI	GAGCTC	3 cut(s)	104, 242, 348
Sau3AI	GATC	2 cut(s)	147, 220
Sau96I	GGNCC	2 cut(s)	83, 178
ScrFI	CCNGG	2 cut(s)	225, 385
SduI	GDGCHC	4 cut(s)	104, 197, 242, 348
SfaNI	GCATC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	2 cut(s)	263, 307
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	3 cut(s)	104, 242, 348
StyD4I	CCNGG	2 cut(s)	223, 383
TaiI	ACGT	2 cut(s)	45, 200
TaqI	TCGA	5 cut(s)	110, 158, 255, 285, 302
TasI	AATT	2 cut(s)	263, 307
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	249, 296
TspDTI	ATGAA	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.