Rh7DG462500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016942
Physical Location & Seq
Reverse (-)
65863020 .. 65863292
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG462500.1

Sequence Viewer

Length: 273 bp
ATGACATTCTCACTGGTGACGAAAGTTCTCAATAGCGACGGCGAGAAGCTGCACCGATGCCTTCTTCTGCAATCGGACGACGCGGAGCTGGCGACAACTCAAACCCCGCAGCCAGAGACGCCAGAGACATCAACCTCTCCCTCCCCAGTGAAATTTCACCAGCGAGCTCACCTGAGGCAATTTTTCGGTGAGATTGTTGTGCCGGAGGTCCAAGCCACACCAATTTTGAGGTATATGCAGATTCAGATGCGTATTCGATCTTGGGGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.32

Weight (kDa)

7.98

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 83, 107
AcsI RAATTY 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 119
AluBI AGCT 3 cut(s) 49, 88, 167
AluI AGCT 3 cut(s) 49, 88, 167
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 110, 119
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 49, 109
ApoI RAATTY 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 208, 265
AsuHPI GGTGA 4 cut(s) 28, 149, 161, 200
AvaII GGWCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 36, 121
BceAI ACGGC 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 110, 119
BisI GCNGC 2 cut(s) 50, 110
BlsI GCNGC 2 cut(s) 51, 111
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 208, 265
BmiI GGNNCC 1 cut(s) 266
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 47, 237
BmuI ACTGGG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 18, 146
Bse21I CCTNAGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 18, 146
BseXI GCAGC 2 cut(s) 36, 121
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 203, 268
BsmAI GTCTC 2 cut(s) 110, 119
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 257
BspACI CCGC 2 cut(s) 83, 107
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 2 cut(s) 18, 146
BssAI RCCGGY 1 cut(s) 267
BssMI GATC 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 90, 165
BstDEI CTNAG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 2 cut(s) 110, 119
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 2 cut(s) 89, 118
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 36, 121
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 11, 153
Cac8I GCNNGC 2 cut(s) 90, 165
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 208, 265
CseI GACGC 2 cut(s) 89, 127
CviJI RGCY 6 cut(s) 49, 88, 112, 167, 215, 267
CviKI_1 RGCY 6 cut(s) 49, 88, 112, 167, 215, 267
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 110
FaiI YATR 2 cut(s) 234, 236
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 50, 110
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 50, 110
GluI GCNGC 2 cut(s) 50, 110
HaeIII GGCC 1 cut(s) 267
HapII CCGG 2 cut(s) 203, 268
HgaI GACGC 2 cut(s) 89, 127
Hin1I GRCGYC 1 cut(s) 119
HinfI GANTC 1 cut(s) 241
HpaII CCGG 2 cut(s) 203, 268
HphI GGTGA 4 cut(s) 28, 149, 161, 200
Hpy188I TCNGA 2 cut(s) 76, 246
Hpy99I CGWCG 2 cut(s) 41, 83
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 52, 70, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 118
HpyF3I CTNAG 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 74, 126, 135, 159, 173, 185, 216
Lsp1109I GCAGC 2 cut(s) 36, 121
LweI GCATC 2 cut(s) 47, 237
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 3 cut(s) 152, 179, 222
MnlI CCTC 5 cut(s) 145, 151, 168, 199, 222
MspI CCGG 2 cut(s) 203, 268
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 89, 118
NdeII GATC 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 51, 111
Psp124BI GAGCTC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 208, 265
SacI GAGCTC 1 cut(s) 169
SatI GCNGC 2 cut(s) 50, 110
Sau3AI GATC 1 cut(s) 257
Sau96I GGNCC 2 cut(s) 208, 265
SduI GDGCHC 1 cut(s) 169
SetI ASST 7 cut(s) 51, 90, 137, 169, 174, 210, 233
SfaNI GCATC 2 cut(s) 47, 237
SinI GGWCC 1 cut(s) 208
Sse9I AATT 3 cut(s) 152, 179, 222
SsiI CCGC 2 cut(s) 83, 107
SstI GAGCTC 1 cut(s) 169
TaqI TCGA 1 cut(s) 256
TasI AATT 3 cut(s) 152, 179, 222
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 2 cut(s) 18, 153
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 49, 109
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 2 cut(s) 18, 153
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.