Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016942

Physical Location & Seq

Genomic Coordinates Forward (+)

30142816 .. 30146615

Gene Structure 3800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTGACATCAATCTCTCCCTCCCCGGCGAAAGTTCACCAGCGAGCCCACCTGAGGCAGTTTTCTGGTGAGATTGAGCACGGCTTCACATCTTCACAAAAGGGGGCATCTCAAATCAATTTTATCACCTGCCCCAATCAGCCTCCAGAAAAGAGAGACTTCGAAATTTATGCAAGGAAGAAAGAACTAGGAAAGAAGATGGTTGAACGTTGTGCTGGTTTGCCATTAGCCATTACCGTGCTGGCAGGACTTCTAGCTCGTAAAGGCACAATTCAAGAGTGGGATGTGGTGCATAAGAATGCTAATGTTGACAGATTAATTCAATTATGGATCGCAGAAGGTTTGATCTCTACCTCGATCTTCTCAGAGAAATGGGTCTTGAAGTTTGAAGATATACTGTGTAAAGTAGACTTGTCCAGTGAAATTGGAAATCTCGTCCACCTAAGGTTTTTAAGCTTAAAGGGTAGTCAGATAAAAGAGTTGCCATCATCCATAGCTGATTTGGTGTCATTCGCTACAGCCGGCAACTTGCAGACATTACTCAATGTCAGAAGCTCAAATTTTGATTTGAAAAGTCTTGCTGAACTCACCAGTCTAAAAAAACTGTTGATGAGAATGTCAAGGCGCTCCGAAAATCTGCAGGCCATGTTAAAATCTACAAGCATAACAGTTAGCCCTCATCTCCGGTTTCTGTCTCTGTTTTACTATGGGAAAGAAGAGAGTACTTCTGGGCAACTTAGAGTGATCCTAACTCCTAGCCCGGCCCCTAGCACTAGCAGTCATCCTTTATCCTATTGCTTAAGTACAGAAGATGTGAGTTACAAGGCTGTTGCAGATTTAAGCTACCCCATTCTATTGTTAATAACTCCATTTTCGCGGAAAAGAAAGGGTATATTCATTACTCTCGTGATCCCGTCGCTTACTTTGATTTATTCAATTATTGGACTTGTTAATATTGTTTGTTCTTCCTATCCTTGCCTACTTTACAGAGGAGATGTCTGCAACGGCAATGCTGAGGTTTCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

343

Amino Acids

37.93

Weight (kDa)

9.24

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	118 - 209	4.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016942)

Species	Orthologous Gene IDs
malus_domestica	MD12G1114600.v1.1
rosa_chinensis	RchiOBHm_Chr4g0441031 RchiOBHm_Chr6g0303141 RchiOBHm_Chr7g0223521 RchiOBHm_Chr7g0238701
rosa_laevigata	RLG00000002450 RLG00000009635 RLG00000019449 RLG00000028910 RLG00000034962
rosa_roxburghii	Rroxscaffold_1G00027990
rosa_rugosa	Rorug01G0173000
rosa_samantha	Rh5DG055800 Rh7DG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	877
AciI	CCGC	1 cut(s)	877
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	3 cut(s)	338, 739, 904
AcsI	RAATTY	2 cut(s)	165, 559
AfaI	GTAC	2 cut(s)	724, 805
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflII	CTTAAG	1 cut(s)	799
AgsI	TTSAA	7 cut(s)	206, 275, 323, 382, 389, 571, 936
AluBI	AGCT	5 cut(s)	257, 456, 497, 555, 843
AluI	AGCT	5 cut(s)	257, 456, 497, 555, 843
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	150, 699
AlwI	GGATC	3 cut(s)	338, 739, 904
AoxI	GGCC	2 cut(s)	642, 762
ApoI	RAATTY	2 cut(s)	165, 559
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	763
AsuC2I	CCSGG	2 cut(s)	26, 761
AsuHPI	GGTGA	5 cut(s)	16, 29, 80, 118, 580
AsuII	TTCGAA	1 cut(s)	162
AxyI	CCTNAGG	2 cut(s)	53, 443
BanII	GRGCYC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	905
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	1014
BccI	CCATC	2 cut(s)	193, 493
BceAI	ACGGC	2 cut(s)	97, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcnI	CCSGG	2 cut(s)	26, 761
BcoDI	GTCTC	2 cut(s)	150, 699
BfaI	CTAG	5 cut(s)	188, 254, 756, 768, 774
BfmI	CTRYAG	2 cut(s)	516, 638
BfoI	RGCGCY	1 cut(s)	628
BfrI	CTTAAG	1 cut(s)	799
BfuAI	ACCTGC	1 cut(s)	137
BmcAI	AGTACT	1 cut(s)	724
Bme1390I	CCNGG	2 cut(s)	26, 761
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	2 cut(s)	26, 761
BmsI	GCATC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	1014
Bpu14I	TTCGAA	1 cut(s)	162
BpuMI	CCSGG	2 cut(s)	26, 761
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	417, 591
Bse21I	CCTNAGG	2 cut(s)	53, 443
Bse3DI	GCAATG	1 cut(s)	1015
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	289, 488, 781
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	1015
BseMII	CTCAG	3 cut(s)	44, 378, 1005
BseNI	ACTGG	2 cut(s)	417, 591
BseRI	GAGGAG	1 cut(s)	1005
Bsh1236I	CGCG	1 cut(s)	877
BshFI	GGCC	2 cut(s)	644, 764
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	26, 522, 685, 761
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	150, 699
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	644, 764
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	49, 81
Bsp143I	GATC	5 cut(s)	330, 345, 357, 744, 909
BspACI	CCGC	1 cut(s)	877
BspANI	GGCC	2 cut(s)	644, 764
BspCNI	CTCAG	3 cut(s)	45, 377, 1006
BspFNI	CGCG	1 cut(s)	877
BspLI	GGNNCC	1 cut(s)	765
BspMAI	CTGCAG	1 cut(s)	642
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	338, 739, 904
BspT104I	TTCGAA	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	1015
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	417, 591
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	330, 345, 357, 744, 909
BssSI	CACGAG	1 cut(s)	905
Bst2BI	CACGAG	1 cut(s)	905
Bst4CI	ACNGT	4 cut(s)	238, 399, 606, 670
Bst6I	CTCTTC	1 cut(s)	711
BstAFI	CTTAAG	1 cut(s)	799
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	45, 243, 523, 642
BstDEI	CTNAG	5 cut(s)	53, 364, 443, 737, 1014
BstF5I	GGATG	3 cut(s)	289, 488, 781
BstFNI	CGCG	1 cut(s)	877
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	5 cut(s)	333, 348, 360, 747, 912
BstMAI	GTCTC	2 cut(s)	150, 699
BstMBI	GATC	5 cut(s)	330, 345, 357, 744, 909
BstSCI	CCNGG	2 cut(s)	24, 759
BstSFI	CTRYAG	2 cut(s)	516, 638
BstUI	CGCG	1 cut(s)	877
Bsu36I	CCTNAGG	2 cut(s)	53, 443
BsuRI	GGCC	2 cut(s)	644, 764
BtsCI	GGATG	3 cut(s)	289, 488, 781
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	4 cut(s)	45, 243, 523, 642
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	763
Csp6I	GTAC	2 cut(s)	723, 804
CviAII	CATG	1 cut(s)	646
CviQI	GTAC	2 cut(s)	723, 804
DdeI	CTNAG	5 cut(s)	53, 364, 443, 737, 1014
DpnI	GATC	5 cut(s)	332, 347, 359, 746, 911
DpnII	GATC	5 cut(s)	330, 345, 357, 744, 909
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco24I	GRGCYC	1 cut(s)	49
Eco81I	CCTNAGG	2 cut(s)	53, 443
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	1 cut(s)	649
FaiI	YATR	9 cut(s)	171, 294, 328, 395, 494, 647, 665, 708, 893
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	408
FokI	GGATG	3 cut(s)	296, 475, 768
FriOI	GRGCYC	1 cut(s)	49
FspBI	CTAG	5 cut(s)	188, 254, 756, 768, 774
GlaI	GCGC	1 cut(s)	626
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	644, 764
HapII	CCGG	4 cut(s)	26, 522, 685, 761
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	1 cut(s)	649
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	454
HpaII	CCGG	4 cut(s)	26, 522, 685, 761
HphI	GGTGA	5 cut(s)	16, 29, 80, 118, 580
Hpy166II	GTNNAC	4 cut(s)	37, 310, 409, 439
Hpy188I	TCNGA	5 cut(s)	367, 471, 551, 631, 1024
Hpy188III	TCNNGA	4 cut(s)	146, 275, 379, 907
Hpy8I	GTNNAC	4 cut(s)	37, 310, 409, 439
Hpy99I	CGWCG	1 cut(s)	919
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	4 cut(s)	238, 399, 606, 670
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	6 cut(s)	173, 292, 532, 640, 833, 1002
HpyF3I	CTNAG	5 cut(s)	53, 364, 443, 737, 1014
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	649
HspAI	GCGC	1 cut(s)	625
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	330, 345, 357, 744, 909
LmnI	GCTCC	1 cut(s)	632
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	5 cut(s)	188, 254, 756, 768, 774
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	4, 818
MalI	GATC	5 cut(s)	332, 347, 359, 746, 911
MboI	GATC	5 cut(s)	330, 345, 357, 744, 909
MboII	GAAGA	8 cut(s)	84, 190, 208, 352, 401, 728, 821, 957
MhlI	GDGCHC	2 cut(s)	49, 81
MluCI	AATT	8 cut(s)	118, 165, 270, 318, 323, 423, 559, 936
MnlI	CCTC	7 cut(s)	31, 48, 153, 364, 687, 983, 1009
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	8 cut(s)	317, 452, 458, 650, 800, 839, 860, 951
MslI	CAYNNNNRTG	2 cut(s)	236, 297
MspCI	CTTAAG	1 cut(s)	799
MspI	CCGG	4 cut(s)	26, 522, 685, 761
MspR9I	CCNGG	2 cut(s)	26, 761
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	1 cut(s)	877
NaeI	GCCGGC	1 cut(s)	523
NciI	CCSGG	2 cut(s)	26, 761
NdeII	GATC	5 cut(s)	330, 345, 357, 744, 909
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	4
NspV	TTCGAA	1 cut(s)	162
PaqCI	CACCTGC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	1 cut(s)	763
PstI	CTGCAG	1 cut(s)	642
RsaI	GTAC	2 cut(s)	724, 805
RsaNI	GTAC	2 cut(s)	723, 804
RseI	CAYNNNNRTG	2 cut(s)	236, 297
SaqAI	TTAA	8 cut(s)	317, 452, 458, 650, 800, 839, 860, 951
Sau3AI	GATC	5 cut(s)	330, 345, 357, 744, 909
Sau96I	GGNCC	1 cut(s)	763
ScaI	AGTACT	1 cut(s)	724
ScrFI	CCNGG	2 cut(s)	26, 761
SduI	GDGCHC	2 cut(s)	49, 81
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	2 cut(s)	516, 638
SfuI	TTCGAA	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	236, 297
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
Sse9I	AATT	8 cut(s)	118, 165, 270, 318, 323, 423, 559, 936
SsiI	CCGC	1 cut(s)	877
SspI	AATATT	1 cut(s)	955
SspMI	CTAG	5 cut(s)	188, 254, 756, 768, 774
StyD4I	CCNGG	2 cut(s)	24, 759
TaaI	ACNGT	4 cut(s)	238, 399, 606, 670
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	162, 356
TasI	AATT	8 cut(s)	118, 165, 270, 318, 323, 423, 559, 936
TatI	WGTACW	2 cut(s)	722, 803
Tru1I	TTAA	8 cut(s)	317, 452, 458, 650, 800, 839, 860, 951
Tru9I	TTAA	8 cut(s)	317, 452, 458, 650, 800, 839, 860, 951
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	886
TspRI	CASTG	1 cut(s)	424
Vha464I	CTTAAG	1 cut(s)	799
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	2 cut(s)	165, 559
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 499
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	5 cut(s)	188, 254, 756, 768, 774
ZrmI	AGTACT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.