Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016942

Physical Location & Seq

Genomic Coordinates Forward (+)

55705115 .. 55705684

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCATCCTCCATCCCCGATAACCTAACCAGAGACCAGCACGTCCACTTGGCCAAGCTCACCGAGCAGGCGGAGTGCTTCGAGGAGATGGGTCCACCAAGGCGTCGGAGCTCACCGTCGAGGAGCGCATCGAGCAGAAGGAGGAAGGCCTCAAGAACGAGGAGGACATGGCACTCGGCAAGGAGTACAGATCCAAGGTCGAGGCCGAGCTCTCTGAGATGTGGCGGGGGTGGTGGTGGAGCTCCAGCGGGGTTGACGGCGACATCATTCTCTCCCTCCTCCTCGGCGAAAGTTCACCAACGAGCCCACCTGAGGCGGTTTTCCGGTGAGATCAAGTACGGCTTCACAACTTTACAGCTTCACAGAAGGCAAAAGGGTGCCCAAATCAATTTCGTCACCTGCCCCGGCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

138

Amino Acids

15.07

Weight (kDa)

11.65

Isoelectric Point (pI)

97.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016942)

Species	Orthologous Gene IDs
malus_domestica	MD12G1114600.v1.1
rosa_chinensis	RchiOBHm_Chr4g0441031 RchiOBHm_Chr6g0303141 RchiOBHm_Chr7g0223521 RchiOBHm_Chr7g0238701
rosa_laevigata	RLG00000002450 RLG00000009635 RLG00000019449 RLG00000028910 RLG00000034962
rosa_roxburghii	Rroxscaffold_1G00027990
rosa_rugosa	Rorug01G0173000
rosa_samantha	Rh5DG055800 Rh7DG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	377
AciI	CCGC	4 cut(s)	71, 225, 248, 316
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	2 cut(s)	187, 338
AfiI	CCNNNNNNNGG	1 cut(s)	312
AjiI	CACGTC	1 cut(s)	43
AluBI	AGCT	5 cut(s)	58, 111, 210, 242, 358
AluI	AGCT	5 cut(s)	58, 111, 210, 242, 358
Alw21I	GWGCWC	3 cut(s)	113, 212, 244
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	3 cut(s)	51, 147, 203
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	5 cut(s)	52, 105, 287, 338, 388
AvaII	GGWCC	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	4 cut(s)	113, 212, 244, 307
Bbv12I	GWGCWC	3 cut(s)	113, 212, 244
BccI	CCATC	2 cut(s)	20, 82
BceAI	ACGGC	2 cut(s)	273, 355
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	93, 379
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	14, 137
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	98, 194, 282, 403
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	98, 194, 282, 403
BseGI	GGATG	2 cut(s)	5, 12
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	206, 302
BseRI	GAGGAG	5 cut(s)	98, 136, 175, 268, 271
BseSI	GKGCMC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	53, 149, 205
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	3 cut(s)	113, 212, 244
BsiSI	CCGG	2 cut(s)	324, 405
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	53, 149, 205
Bso31I	GGTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	5 cut(s)	113, 212, 244, 307, 382
Bsp143I	GATC	2 cut(s)	190, 330
BspACI	CCGC	4 cut(s)	71, 225, 248, 316
BspANI	GGCC	3 cut(s)	53, 149, 205
BspCNI	CTCAG	2 cut(s)	207, 303
BspLI	GGNNCC	2 cut(s)	93, 379
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	27
BssECI	CCNNGG	4 cut(s)	98, 194, 282, 403
BssMI	GATC	2 cut(s)	190, 330
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	98, 194
Bst4CI	ACNGT	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	215, 311
BstF5I	GGATG	2 cut(s)	5, 12
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	193, 333
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	190, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 132
BstSCI	CCNGG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	53, 149, 205
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	5, 12
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	186, 337
CviAII	CATG	1 cut(s)	168
CviQI	GTAC	2 cut(s)	186, 337
DdeI	CTNAG	2 cut(s)	215, 311
DpnI	GATC	2 cut(s)	192, 332
DpnII	GATC	2 cut(s)	190, 330
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	3 cut(s)	111, 210, 242
Eco130I	CCWWGG	2 cut(s)	98, 194
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	4 cut(s)	113, 212, 244, 307
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	3 cut(s)	111, 210, 242
Eco81I	CCTNAGG	1 cut(s)	311
EcoICRI	GAGCTC	3 cut(s)	111, 210, 242
EcoT14I	CCWWGG	2 cut(s)	98, 194
EcoT38I	GRGCYC	4 cut(s)	113, 212, 244, 307
ErhI	CCWWGG	2 cut(s)	98, 194
FaeI	CATG	1 cut(s)	171
FaiI	YATR	1 cut(s)	169
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	1 cut(s)	167
FauI	CCCGC	2 cut(s)	218, 241
FriOI	GRGCYC	4 cut(s)	113, 212, 244, 307
FspBI	CTAG	1 cut(s)	412
GlaI	GCGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	53, 149, 205
HapII	CCGG	2 cut(s)	324, 405
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HpaII	CCGG	2 cut(s)	324, 405
HphI	GGTGA	5 cut(s)	52, 105, 287, 338, 388
Hpy166II	GTNNAC	4 cut(s)	46, 95, 255, 295
Hpy188I	TCNGA	2 cut(s)	108, 216
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	4 cut(s)	46, 95, 255, 295
Hpy99I	CGWCG	2 cut(s)	108, 121
HpyAV	CCTTC	3 cut(s)	132, 139, 360
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 132
HpyF3I	CTNAG	2 cut(s)	215, 311
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	190, 330
LmnI	GCTCC	4 cut(s)	108, 123, 239, 247
LpnPI	CCDG	6 cut(s)	43, 50, 53, 258, 323, 337
LweI	GCATC	2 cut(s)	14, 137
MaeI	CTAG	1 cut(s)	412
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	192, 332
MboI	GATC	2 cut(s)	190, 330
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	5 cut(s)	113, 212, 244, 307, 382
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	388
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	86
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	324, 405
MspR9I	CCNGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	64, 132
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	190, 330
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	2 cut(s)	93, 379
NmeAIII	GCCGAG	3 cut(s)	155, 231, 263
NmuCI	GTSAC	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	149
Psp124BI	GAGCTC	3 cut(s)	113, 212, 244
PspN4I	GGNNCC	2 cut(s)	93, 379
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	187, 338
RsaNI	GTAC	2 cut(s)	186, 337
SacI	GAGCTC	3 cut(s)	113, 212, 244
Sau3AI	GATC	2 cut(s)	190, 330
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	5 cut(s)	113, 212, 244, 307, 382
SfaNI	GCATC	2 cut(s)	14, 137
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	388
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	4 cut(s)	71, 225, 248, 316
SspMI	CTAG	1 cut(s)	412
SstI	GAGCTC	3 cut(s)	113, 212, 244
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	98, 194
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	81, 119, 131, 200
TasI	AATT	1 cut(s)	388
TatI	WGTACW	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	92
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.