Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016942

Physical Location & Seq

Genomic Coordinates Reverse (-)

23521572 .. 23523322

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCGGACAAAGGAGAGCCCAGAAAACGGTGGGGGAAGAGCGATTTTGTCGTTGGCAGTCCCACTTCTCGGTCTCGATTCTTCTTCTCCAGCTCGTTTCAAGTTCGATTGGTTGCCCAGACTTCATGTATAGACCAAGGCGAGCAAAAGCCCTCCAAGAACTCGGCCAAAGGTGGCCGGAGTTGGGAGAACGATGGAGGCGAAAGGAGGAGGCGCGGCTGGGCTCGAGAGAGAACTGGGGAGGGATTTCTGGAATTCTGGAAATTCTGTCCTTGTTTGCAATTTCCGGAAATAGAAATGTATTTATACCAAAATGGAAATATCTTCAAAAATCCATAACTAATTCCCACGAACTCCGATTTTCGCGTTCTACATATGCACGAGTTCGTATCGACAAGCTCTACGACTTTCATGAAGGAAATTTTCCCAAATTCCGTAAGCATAAAAAGTCAACTTTTCACGAGCCCCTAAATTACGAGATTGAAGATTGGGAAGCAAAATTTTATAATCATGTGACGCTGGTTATTGGCAGTGCAGATTGTGCCATTAAAAATAAAATCTACCGGCCCCGTCACGAAGATTTCGTAACTGTTTACAATGCTAACAATAACAGAAATCCTGACAAAGGTTTTCATGAAGATTATGTGGGACTTTTAAGATTTGTAAGAGCTCTGGTGTTTCATGGTGCTGATCCAGGGAGAGATTTGCCGTGGGAGGATGTAGAGCGAGAATTAAGCAACAGATTTCCTCAGATGCTGATCCAATTATTTGGATTCTTATTCAAGACAATGTCTGAAAATGATCTCTCTTTCTTAGTTGACCGAAGGTCTTCGGTTTCTGGTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

283

Amino Acids

33.34

Weight (kDa)

9.47

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016942)

Species	Orthologous Gene IDs
malus_domestica	MD12G1114600.v1.1
rosa_chinensis	RchiOBHm_Chr4g0441031 RchiOBHm_Chr6g0303141 RchiOBHm_Chr7g0223521 RchiOBHm_Chr7g0238701
rosa_laevigata	RLG00000002450 RLG00000009635 RLG00000019449 RLG00000028910 RLG00000034962
rosa_roxburghii	Rroxscaffold_1G00027990
rosa_rugosa	Rorug01G0173000
rosa_samantha	Rh5DG055800 Rh7DG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AccII	CGCG	2 cut(s)	217, 367
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	686, 754
AcoI	YGGCCR	3 cut(s)	3, 166, 176
AcsI	RAATTY	5 cut(s)	255, 264, 421, 431, 500
AfiI	CCNNNNNNNGG	5 cut(s)	12, 28, 70, 185, 626
AgsI	TTSAA	4 cut(s)	102, 329, 485, 784
AhdI	GACNNNNNGTC	1 cut(s)	826
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	3 cut(s)	94, 400, 671
AluI	AGCT	3 cut(s)	94, 400, 671
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	686, 754
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	1 cut(s)	226
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	4 cut(s)	3, 166, 176, 566
ApoI	RAATTY	5 cut(s)	255, 264, 421, 431, 500
Asp700I	GAANNNNTTC	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	567
AvaI	CYCGRG	1 cut(s)	226
BanII	GRGCYC	4 cut(s)	22, 227, 468, 673
BauI	CACGAG	2 cut(s)	381, 461
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	673
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	696
BmeRI	GACNNNNNGTC	1 cut(s)	826
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	696
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	758
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	137, 695, 710
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 28, 70, 185, 626
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	758
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	137, 695, 710
BseGI	GGATG	1 cut(s)	724
BseJI	GATNNNNATC	1 cut(s)	758
BseLI	CCNNNNNNNGG	5 cut(s)	12, 28, 70, 185, 626
BseMII	CTCAG	1 cut(s)	764
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	2 cut(s)	217, 367
BshFI	GGCC	4 cut(s)	5, 168, 178, 568
BsiHKAI	GWGCWC	1 cut(s)	673
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	4 cut(s)	6, 179, 288, 565
BslFI	GGGAC	2 cut(s)	46, 663
BslI	CCNNNNNNNGG	5 cut(s)	12, 28, 70, 185, 626
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	46, 663
BsnI	GGCC	4 cut(s)	5, 168, 178, 568
Bso31I	GGTCTC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	4 cut(s)	22, 227, 468, 673
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	691, 759, 802
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	5, 168, 178, 568
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	217, 367
BspHI	TCATGA	2 cut(s)	412, 634
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	686, 754
BspQI	GCTCTTC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	3 cut(s)	137, 695, 710
BssMI	GATC	3 cut(s)	691, 759, 802
BssSI	CACGAG	2 cut(s)	381, 461
BssT1I	CCWWGG	1 cut(s)	137
Bst2BI	CACGAG	2 cut(s)	381, 461
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	31, 592
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	750, 814
BstDSI	CCRYGG	1 cut(s)	710
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	2 cut(s)	217, 367
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	694, 762, 805
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	3 cut(s)	691, 759, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstUI	CGCG	2 cut(s)	217, 367
BstV2I	GAAGAC	1 cut(s)	822
BstXI	CCANNNNNNTGG	1 cut(s)	770
BsuRI	GGCC	4 cut(s)	5, 168, 178, 568
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	757
CciI	TCATGA	2 cut(s)	412, 634
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	567
CseI	GACGC	1 cut(s)	526
CviAII	CATG	5 cut(s)	127, 413, 512, 635, 683
DdeI	CTNAG	2 cut(s)	750, 814
DpnI	GATC	3 cut(s)	693, 761, 804
DpnII	GATC	3 cut(s)	691, 759, 802
DriI	GACNNNNNGTC	1 cut(s)	826
EaeI	YGGCCR	3 cut(s)	3, 166, 176
Eam1104I	CTCTTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	4 cut(s)	22, 227, 468, 673
Eco31I	GGTCTC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	671
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	4 cut(s)	22, 227, 468, 673
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	5 cut(s)	130, 416, 515, 638, 686
FaqI	GGGAC	2 cut(s)	46, 663
FatI	CATG	5 cut(s)	126, 412, 511, 634, 682
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	4 cut(s)	22, 227, 468, 673
Fsp4HI	GCNGC	1 cut(s)	218
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	4 cut(s)	5, 168, 178, 568
HapII	CCGG	4 cut(s)	6, 179, 288, 565
HgaI	GACGC	1 cut(s)	526
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	5 cut(s)	130, 416, 515, 638, 686
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	453, 820
HindII	GTYRAC	2 cut(s)	453, 820
HinfI	GANTC	2 cut(s)	79, 774
HpaII	CCGG	4 cut(s)	6, 179, 288, 565
Hpy166II	GTNNAC	3 cut(s)	453, 595, 820
Hpy188I	TCNGA	3 cut(s)	359, 753, 796
Hpy8I	GTNNAC	3 cut(s)	453, 595, 820
HpyAV	CCTTC	2 cut(s)	410, 819
HpyCH4III	ACNGT	2 cut(s)	31, 592
HpyCH4V	TGCA	3 cut(s)	281, 380, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	750, 814
Hsp92II	CATG	5 cut(s)	130, 416, 515, 638, 686
HspAI	GCGC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	691, 759, 802
LguI	GCTCTTC	1 cut(s)	33
LweI	GCATC	1 cut(s)	744
MaeIII	GTNAC	3 cut(s)	514, 572, 586
MalI	GATC	3 cut(s)	693, 761, 804
MboI	GATC	3 cut(s)	691, 759, 802
MboII	GAAGA	8 cut(s)	50, 74, 77, 317, 497, 590, 650, 822
MhlI	GDGCHC	4 cut(s)	22, 227, 468, 673
MnlI	CCTC	7 cut(s)	164, 192, 202, 205, 236, 709, 759
MroI	TCCGGA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	3 cut(s)	549, 656, 734
MspI	CCGG	4 cut(s)	6, 179, 288, 565
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	2 cut(s)	217, 367
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	691, 759, 802
NlaIII	CATG	5 cut(s)	130, 416, 515, 638, 686
NlaIV	GGNNCC	1 cut(s)	569
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	514, 572
PaeR7I	CTCGAG	1 cut(s)	226
PagI	TCATGA	2 cut(s)	412, 634
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	2 cut(s)	199, 582
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	2 cut(s)	79, 774
PflFI	GACNNNGTC	1 cut(s)	790
PkrI	GCNGC	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	757
PsyI	GACNNNGTC	1 cut(s)	790
SacI	GAGCTC	1 cut(s)	673
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	549, 656, 734
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	691, 759, 802
Sau96I	GGNCC	1 cut(s)	567
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	4 cut(s)	22, 227, 468, 673
SetI	ASST	6 cut(s)	96, 176, 402, 631, 673, 830
SfaNI	GCATC	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SsiI	CCGC	1 cut(s)	217
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	31, 592
TaqI	TCGA	4 cut(s)	77, 107, 227, 393
TaqII	GACCGA	2 cut(s)	61, 837
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	79, 774
Tru1I	TTAA	3 cut(s)	549, 656, 734
Tru9I	TTAA	3 cut(s)	549, 656, 734
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	2 cut(s)	514, 572
Tsp45I	GTSAC	2 cut(s)	514, 572
TspDTI	ATGAA	6 cut(s)	115, 401, 429, 623, 651, 671
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	538
Tth111I	GACNNNGTC	1 cut(s)	790
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	5 cut(s)	255, 264, 421, 431, 500
XhoI	CTCGAG	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.