RLG00000002530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017455
Physical Location & Seq
Reverse (-)
35839812 .. 35845298
5487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002530

Sequence Viewer

Length: 708 bp
ATGACAGCGCCGGAGCTTCCGACGGCGGGGTTTATCAGATCTAGGGAGGAGAGAGACTCCGAAGTGAGTGAACAGGAGATTGGGGCCGGTGATGCTATGGATGTTGATGCGGTGGCTTCTCGGGGTATATTGGAAGATCAACAGTTTGCTAAACGGAGGAAAACGGAGGCGCCGGATGGTCGGGAGATTGGTTCGGTGGTGGCGTTAAAGACGGGGAGTGATTTGAGGGATGTACCGGTGAAATTGGCGCCGGAATTGCAGTCTGCTTTAATTACTGTACCAATTTCGGAGGCCGCTTTTGGGAAGAAAATCGGGGACTTATTACCTTTGAACTATGTTTCTCGTCTTGATCCGGAATCACCGCAGTTACCTTCCAAGGAGGTGGATGTTAGGTCCTCTTATTTGAAATTGAAACAGCAAGAGTCTTTTACTCTTTTATCCGAAGCGGGTTTGGAGGAAACTGGGCTGAATGGAGAGTTCTTGATTGGTGGGCCCGAGCTGACTAAAAGTGGGATTATTACTCCCCCTCCCTCTTTGGGCCATGGTCGTGGTAGTGAAGTAGGAAAAGGGGGCAAAAAGAAAAGTGCTGGTAGGTCCCATGCACCCCATGCACGTAAAGGCAAGTATGCCAAAGCAGGATTTGCAGGAACATATGCCATTTTGCAACCTCCTTACTATGATTCTTTAAAGGTTGTAATGGTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.1

Weight (kDa)

6.36

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 169, 247
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 5 cut(s) 26, 110, 294, 362, 446
AclWI GGATC 1 cut(s) 344
AcyI GRCGYC 2 cut(s) 170, 248
AfaI GTAC 2 cut(s) 234, 279
AfiI CCNNNNNNNGG 3 cut(s) 26, 300, 536
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 331, 406, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 16, 499
AluI AGCT 2 cut(s) 16, 499
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 344
Ama87I CYCGRG 2 cut(s) 120, 494
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 4 cut(s) 84, 291, 491, 538
ApaI GGGCCC 1 cut(s) 495
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 3 cut(s) 10, 172, 250
AspS9I GGNCC 6 cut(s) 84, 393, 491, 492, 538, 594
AsuHPI GGTGA 3 cut(s) 101, 250, 351
AvaI CYCGRG 2 cut(s) 120, 494
AvaII GGWCC 2 cut(s) 393, 594
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 2 cut(s) 169, 247
BanII GRGCYC 1 cut(s) 495
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 704
BfoI RGCGCY 3 cut(s) 11, 173, 251
BglII AGATCT 1 cut(s) 38
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 2 cut(s) 393, 594
BmeT110I CYCGRG 2 cut(s) 120, 494
BmgT120I GGNCC 6 cut(s) 84, 393, 491, 492, 538, 594
BmiI GGNNCC 5 cut(s) 85, 171, 249, 493, 596
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 82, 97
BmuI ACTGGG 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaAI YACGTR 1 cut(s) 614
BsaHI GRCGYC 2 cut(s) 170, 248
BsaJI CCNNGG 2 cut(s) 375, 541
BsaWI WCCGGW 2 cut(s) 235, 352
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 300, 536
Bse118I RCCGGY 2 cut(s) 86, 235
Bse1I ACTGG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 375, 541
BseGI GGATG 4 cut(s) 106, 181, 235, 391
BseLI CCNNNNNNNGG 3 cut(s) 26, 300, 536
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 495
BshFI GGCC 4 cut(s) 86, 293, 493, 540
BshNI GGYRCC 2 cut(s) 169, 247
BshTI ACCGGT 1 cut(s) 235
BsiHKCI CYCGRG 2 cut(s) 120, 494
BsiSI CCGG 6 cut(s) 11, 87, 173, 236, 251, 353
BslFI GGGAC 2 cut(s) 329, 580
BslI CCNNNNNNNGG 3 cut(s) 26, 300, 536
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 2 cut(s) 329, 580
BsnI GGCC 4 cut(s) 86, 293, 493, 540
BsoBI CYCGRG 2 cut(s) 120, 494
Bsp120I GGGCCC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 495
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 3 cut(s) 38, 136, 349
Bsp19I CCATGG 1 cut(s) 541
BspACI CCGC 5 cut(s) 26, 110, 294, 362, 446
BspANI GGCC 4 cut(s) 86, 293, 493, 540
BspEI TCCGGA 1 cut(s) 352
BspLI GGNNCC 5 cut(s) 85, 171, 249, 493, 596
BspPI GGATC 1 cut(s) 344
BspT107I GGYRCC 2 cut(s) 169, 247
BsrFI RCCGGY 2 cut(s) 86, 235
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 2 cut(s) 86, 235
BssECI CCNNGG 2 cut(s) 375, 541
BssMI GATC 3 cut(s) 38, 136, 349
BssNI GRCGYC 2 cut(s) 170, 248
BssT1I CCWWGG 2 cut(s) 375, 541
Bst4CI ACNGT 2 cut(s) 144, 277
BstACI GRCGYC 2 cut(s) 170, 248
BstAPI GCANNNNNTGC 2 cut(s) 608, 641
BstBAI YACGTR 1 cut(s) 614
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 4 cut(s) 106, 181, 235, 391
BstH2I RGCGCY 3 cut(s) 11, 173, 251
BstHHI GCGC 3 cut(s) 10, 172, 250
BstKTI GATC 3 cut(s) 41, 139, 352
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 38, 136, 349
BstMWI GCNNNNNNNGC 4 cut(s) 92, 256, 608, 641
BstSFI CTRYAG 1 cut(s) 704
BstSLI GKGCMC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 38
BstXI CCANNNNNNTGG 2 cut(s) 382, 548
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 4 cut(s) 86, 293, 493, 540
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 4 cut(s) 106, 181, 235, 391
CfoI GCGC 3 cut(s) 10, 172, 250
Cfr10I RCCGGY 2 cut(s) 86, 235
Cfr13I GGNCC 6 cut(s) 84, 393, 491, 492, 538, 594
Csp6I GTAC 2 cut(s) 233, 278
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 3 cut(s) 542, 599, 608
CviJI RGCY 8 cut(s) 16, 86, 116, 293, 466, 493, 499, 540
CviKI_1 RGCY 8 cut(s) 16, 86, 116, 293, 466, 493, 499, 540
CviQI GTAC 2 cut(s) 233, 278
DinI GGCGCC 2 cut(s) 171, 249
DpnI GATC 3 cut(s) 40, 138, 351
DpnII GATC 3 cut(s) 38, 136, 349
DraI TTTAAA 1 cut(s) 687
Eco130I CCWWGG 2 cut(s) 375, 541
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 393, 594
Eco88I CYCGRG 2 cut(s) 120, 494
EcoO109I RGGNCCY 2 cut(s) 393, 594
EcoT14I CCWWGG 2 cut(s) 375, 541
EcoT38I GRGCYC 1 cut(s) 495
EgeI GGCGCC 2 cut(s) 171, 249
EheI GGCGCC 2 cut(s) 171, 249
ErhI CCWWGG 2 cut(s) 375, 541
FaeI CATG 3 cut(s) 545, 602, 611
FaqI GGGAC 2 cut(s) 329, 580
FatI CATG 3 cut(s) 541, 598, 607
FauI CCCGC 2 cut(s) 19, 439
FauNDI CATATG 1 cut(s) 652
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 4 cut(s) 113, 188, 242, 398
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 42
GlaI GCGC 3 cut(s) 9, 171, 249
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 3 cut(s) 11, 173, 251
HaeIII GGCC 4 cut(s) 86, 293, 493, 540
HapII CCGG 6 cut(s) 11, 87, 173, 236, 251, 353
HhaI GCGC 3 cut(s) 10, 172, 250
Hin1I GRCGYC 2 cut(s) 170, 248
Hin1II CATG 3 cut(s) 545, 602, 611
Hin6I GCGC 3 cut(s) 8, 170, 248
HinP1I GCGC 3 cut(s) 8, 170, 248
HinfI GANTC 4 cut(s) 56, 356, 422, 680
HpaII CCGG 6 cut(s) 11, 87, 173, 236, 251, 353
HphI GGTGA 3 cut(s) 101, 250, 351
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 5 cut(s) 21, 38, 61, 289, 442
Hpy188III TCNNGA 4 cut(s) 182, 347, 353, 481
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 2 cut(s) 144, 277
HpyCH4IV ACGT 1 cut(s) 613
HpyCH4V TGCA 5 cut(s) 259, 602, 611, 644, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 256, 608, 641
HpySE526I ACGT 1 cut(s) 613
Hsp92I GRCGYC 2 cut(s) 170, 248
Hsp92II CATG 3 cut(s) 545, 602, 611
HspAI GCGC 3 cut(s) 8, 170, 248
KasI GGCGCC 2 cut(s) 169, 247
Kpn2I TCCGGA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 38, 136, 349
LmnI GCTCC 1 cut(s) 13
LweI GCATC 2 cut(s) 82, 97
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 613
MaeIII GTNAC 1 cut(s) 366
MalI GATC 3 cut(s) 40, 138, 351
MboI GATC 3 cut(s) 38, 136, 349
MboII GAAGA 2 cut(s) 146, 316
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 5 cut(s) 242, 254, 270, 282, 407
Mly113I GGCGCC 2 cut(s) 170, 248
MlyI GAGTC 2 cut(s) 50, 431
MmeI TCCRAC 1 cut(s) 44
MroI TCCGGA 1 cut(s) 352
MseI TTAA 3 cut(s) 206, 269, 686
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 6 cut(s) 11, 87, 173, 236, 251, 353
MwoI GCNNNNNNNGC 4 cut(s) 92, 256, 608, 641
NarI GGCGCC 2 cut(s) 170, 248
NcoI CCATGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 652
NdeII GATC 3 cut(s) 38, 136, 349
NlaIII CATG 3 cut(s) 545, 602, 611
NlaIV GGNNCC 5 cut(s) 85, 171, 249, 493, 596
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 2 cut(s) 356, 680
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 2 cut(s) 50, 430
PluTI GGCGCC 2 cut(s) 173, 251
PpsI GAGTC 2 cut(s) 50, 430
Ppu21I YACGTR 1 cut(s) 614
PpuMI RGGWCCY 2 cut(s) 393, 594
Psp5II RGGWCCY 2 cut(s) 393, 594
PspN4I GGNNCC 5 cut(s) 85, 171, 249, 493, 596
PspOMI GGGCCC 1 cut(s) 491
PspPI GGNCC 6 cut(s) 84, 393, 491, 492, 538, 594
PspPPI RGGWCCY 2 cut(s) 393, 594
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 234, 279
RsaNI GTAC 2 cut(s) 233, 278
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 3 cut(s) 206, 269, 686
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 38, 136, 349
Sau96I GGNCC 6 cut(s) 84, 393, 491, 492, 538, 594
SchI GAGTC 2 cut(s) 50, 431
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 2 cut(s) 82, 97
SfcI CTRYAG 1 cut(s) 704
SfoI GGCGCC 2 cut(s) 171, 249
SinI GGWCC 2 cut(s) 393, 594
SmiMI CAYNNNNRTG 1 cut(s) 546
Sse9I AATT 5 cut(s) 242, 254, 270, 282, 407
SsiI CCGC 5 cut(s) 26, 110, 294, 362, 446
SspDI GGCGCC 2 cut(s) 169, 247
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 375, 541
TaaI ACNGT 2 cut(s) 144, 277
TaiI ACGT 1 cut(s) 616
TasI AATT 5 cut(s) 242, 254, 270, 282, 407
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 356, 680
Tru1I TTAA 3 cut(s) 206, 269, 686
Tru9I TTAA 3 cut(s) 206, 269, 686
TspGWI ACGGA 2 cut(s) 169, 179
VpaK11BI GGWCC 2 cut(s) 393, 594
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.