Rroxscaffold_6G00403940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017455
Physical Location & Seq
Forward (+)
26383822 .. 26384178
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403940.1

Sequence Viewer

Length: 357 bp
ATGGAGTTGGATCTGATGACGACTGGAGAGGAGCAGGAAGGCCAAAAGCGTGCAAAACGGAGGAAAGTGGTGACATCGGCTGGGCCGTCTGCAACACCTGCGGCGGTCTCTTCTGCGATGAGTAATCTAAGGGAAGTGCCTGTGATGGTGGCGACAGATTTGGGATATGTTTTAATGGAATTACCAATCTCGGAGGCTGGGTCTGGTAAGCAATTTGAGTCTTCATTGGGGTCGAAATCTGTCTCCTATCTTGATCCGGTTCCTCCGCATATTCCCTTTATGGATAGTGTAGTAGTTGAGTCAACTTTGAATTGCGATATGCGAGATTCTCTCCTACCTCTTCGGATATTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.68

Weight (kDa)

4.91

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 3 cut(s) 101, 104, 266
AclWI GGATC 2 cut(s) 18, 248
AgsI TTSAA 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 112, 247
AlwI GGATC 2 cut(s) 18, 248
AoxI GGCC 2 cut(s) 40, 83
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 112, 247
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse1I ACTGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 44
BseYI CCCAGC 2 cut(s) 80, 197
BshFI GGCC 2 cut(s) 42, 85
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 112, 247
BsnI GGCC 2 cut(s) 42, 85
Bso31I GGTCTC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 10, 253
BspACI CCGC 3 cut(s) 101, 104, 266
BspANI GGCC 2 cut(s) 42, 85
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 2 cut(s) 18, 248
BspTNI GGTCTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 28
BssMI GATC 2 cut(s) 10, 253
Bst6I CTCTTC 2 cut(s) 115, 345
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 13, 256
BstMAI GTCTC 2 cut(s) 112, 247
BstMBI GATC 2 cut(s) 10, 253
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 2 cut(s) 42, 85
BtgZI GCGATG 1 cut(s) 131
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 83
CviJI RGCY 4 cut(s) 42, 80, 85, 197
CviKI_1 RGCY 4 cut(s) 42, 80, 85, 197
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 12, 255
DpnII GATC 2 cut(s) 10, 253
Eam1104I CTCTTC 2 cut(s) 115, 345
EarI CTCTTC 2 cut(s) 115, 345
Eco31I GGTCTC 1 cut(s) 112
FaiI YATR 4 cut(s) 168, 270, 281, 320
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsaI CCCAGC 2 cut(s) 84, 201
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 2 cut(s) 42, 85
HapII CCGG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 3 cut(s) 218, 299, 326
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 15, 193, 345
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 53, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 10, 253
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 9, 20, 66, 111, 153, 183, 189, 270
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 12, 255
MboI GATC 2 cut(s) 10, 253
MboII GAAGA 3 cut(s) 102, 213, 332
MflI RGATCY 1 cut(s) 10
MluCI AATT 3 cut(s) 179, 212, 310
MlyI GAGTC 2 cut(s) 227, 308
MnlI CCTC 5 cut(s) 22, 54, 187, 273, 348
MseI TTAA 2 cut(s) 173, 350
MspI CCGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 2 cut(s) 10, 253
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 226, 307
PpsI GAGTC 2 cut(s) 226, 307
PspFI CCCAGC 2 cut(s) 80, 197
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 10
SaqAI TTAA 2 cut(s) 173, 350
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 10, 253
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 2 cut(s) 227, 308
SetI ASST 2 cut(s) 100, 340
Sse9I AATT 3 cut(s) 179, 212, 310
SsiI CCGC 3 cut(s) 101, 104, 266
TaqI TCGA 1 cut(s) 233
TasI AATT 3 cut(s) 179, 212, 310
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 173, 350
Tru9I TTAA 2 cut(s) 173, 350
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.