Rh1AG121700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017455
Physical Location & Seq
Forward (+)
22698024 .. 22702078
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG121700.1

Sequence Viewer

Length: 975 bp
ATGGAGGTGGATCTGGTGGCCTCTCAGGAGGATGAGCCGGCTCAACAGTTAGCAAAGAGAAGGAAAACGGTGGCGCTGGGTGACCGGATTTCAGATACGACGGCGAGCCATGATTCTGGGAATGTTTTGCGGGATGTGCCTGTGCTCATGGCACCGAATGTGGAGTCTGCTTTAATTAATTTCCCTATTGGGGGGACTGAGATAGGGAAGACGCGCGGGGACTATGGGGATTTGCATGTTAATGGGCTGAATGGGTCTTCATCTGCGGAGAAGCCCAAGAGAACAAAAAAGAATGTTTCTCGCTTGGATGATAGGAAAGTCCGTGAGATTGGGCTAAAAGTGGTTAATGGTTGTAGGCAGAAGTGTGGGGGCCAGCCCCATGCATCCCATGCATCTTCTGTACGTACTAACAAGGTGGCTAAGAAAGGGTATGTGATGAGTAAGGCTCTCTTTTCCCCATCAGAGGTTGAGGTCATTGGGCGGATCCCTCTTAGTGTGCGTGAGTCGGAGGATAGGCTTATTTGGCACTATGATAGGAAGGGCTGTTATACTGTTCGTAATGGATACCATGTAGCGCGTACAGCTGCTGAACGTGATTCTAGGGCATCTAGCTCTAATGGCTCGTTTGGAGTTCATAGATCATATTGGAAGGGTATTTGGCATGCTTGCATTCCACCTAAGGTACGTTCATTTATTTGGCGCGTTGTAAAAGGTCTTTTGCCCACTAAGGTCTCTCTTGCTAGGCGTGTTGCCGTCCCTGATATGAAATGTGCGTTTTGTGCTAATGCAATAGAGGATGGTATTCACTTATTTAGAGATTGTGATGTCACTGGGGACCTTTGGCTACTTAGCTCAGTGGGTTTGAATGTGAAACATGTTCCTGGAAGAAGTTTGGAAGAATGGGTGCTCAATGTTTTTGATGTTTTGCATGGCGGTCTACGTGAGGCTTTCTTCATGTACCTTTGGGTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

324

Amino Acids

35.94

Weight (kDa)

9.49

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 185 - 281 6.1e-15 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 937
AccII CGCG 4 cut(s) 214, 216, 577, 702
AciI CCGC 5 cut(s) 130, 216, 266, 481, 933
AclWI GGATC 3 cut(s) 18, 478, 491
AfaI GTAC 5 cut(s) 402, 406, 580, 684, 959
AfiI CCNNNNNNNGG 3 cut(s) 190, 191, 463
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 1 cut(s) 865
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 3 cut(s) 584, 612, 852
AluI AGCT 3 cut(s) 584, 612, 852
Alw21I GWGCWC 2 cut(s) 147, 909
Alw26I GTCTC 1 cut(s) 736
AlwI GGATC 3 cut(s) 18, 478, 491
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 18, 370
ApeKI GCWGC 1 cut(s) 584
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 4 cut(s) 76, 216, 577, 702
AspS9I GGNCC 2 cut(s) 370, 835
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 835
AxyI CCTNAGG 1 cut(s) 678
BamHI GGATCC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 151
BbsI GAAGAC 2 cut(s) 215, 249
Bbv12I GWGCWC 2 cut(s) 147, 909
BbvI GCAGC 1 cut(s) 571
BccI CCATC 2 cut(s) 466, 791
BceAI ACGGC 2 cut(s) 117, 737
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 4 cut(s) 600, 609, 741, 973
BfoI RGCGCY 1 cut(s) 77
BfuI GTATCC 1 cut(s) 557
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 370, 835
BmiI GGNNCC 4 cut(s) 153, 371, 485, 836
BmrFI CCNGG 1 cut(s) 882
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 3 cut(s) 392, 401, 614
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 2 cut(s) 215, 249
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BsaAI YACGTR 2 cut(s) 404, 941
BsaI GGTCTC 1 cut(s) 736
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 191, 463
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 835
Bse21I CCTNAGG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 882
BseGI GGATG 5 cut(s) 37, 139, 313, 383, 802
BseLI CCNNNNNNNGG 3 cut(s) 190, 191, 463
BseMII CTCAG 3 cut(s) 38, 189, 867
BseNI ACTGG 1 cut(s) 835
BseXI GCAGC 1 cut(s) 571
BseYI CCCAGC 1 cut(s) 76
Bsh1236I CGCG 4 cut(s) 214, 216, 577, 702
BshFI GGCC 2 cut(s) 20, 372
BshNI GGYRCC 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 147, 909
BsiSI CCGG 2 cut(s) 38, 85
BslFI GGGAC 4 cut(s) 208, 233, 740, 848
BslI CCNNNNNNNGG 3 cut(s) 190, 191, 463
BsmAI GTCTC 1 cut(s) 736
BsmFI GGGAC 4 cut(s) 208, 233, 740, 848
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 2 cut(s) 20, 372
Bso31I GGTCTC 1 cut(s) 736
Bsp1286I GDGCHC 2 cut(s) 147, 909
Bsp143I GATC 3 cut(s) 10, 483, 638
BspACI CCGC 5 cut(s) 130, 216, 266, 481, 933
BspANI GGCC 2 cut(s) 20, 372
BspCNI CTCAG 3 cut(s) 37, 190, 866
BspFNI CGCG 4 cut(s) 214, 216, 577, 702
BspLI GGNNCC 4 cut(s) 153, 371, 485, 836
BspPI GGATC 3 cut(s) 18, 478, 491
BspT107I GGYRCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 736
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 3 cut(s) 10, 483, 638
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 48, 70, 553
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 2 cut(s) 404, 941
BstC8I GCNNGC 5 cut(s) 39, 106, 374, 663, 667
BstDEI CTNAG 8 cut(s) 24, 198, 420, 491, 678, 726, 848, 853
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 5 cut(s) 37, 139, 313, 383, 802
BstFNI CGCG 4 cut(s) 214, 216, 577, 702
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 4 cut(s) 76, 216, 577, 702
BstKTI GATC 3 cut(s) 13, 486, 641
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 3 cut(s) 10, 483, 638
BstMWI GCNNNNNNNGC 6 cut(s) 136, 389, 523, 581, 618, 779
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 3 cut(s) 239, 665, 878
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 880
BstSNI TACGTA 1 cut(s) 404
BstUI CGCG 4 cut(s) 214, 216, 577, 702
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 2 cut(s) 215, 249
BstX2I RGATCY 2 cut(s) 10, 483
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 2 cut(s) 10, 483
Bsu36I CCTNAGG 1 cut(s) 678
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 2 cut(s) 20, 372
BtsCI GGATG 5 cut(s) 37, 139, 313, 383, 802
BtsIMutI CAGTG 2 cut(s) 828, 861
Cac8I GCNNGC 5 cut(s) 39, 106, 374, 663, 667
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 4 cut(s) 76, 216, 577, 702
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 370, 835
CseI GACGC 1 cut(s) 220
Csp6I GTAC 5 cut(s) 401, 405, 579, 683, 958
CviQI GTAC 5 cut(s) 401, 405, 579, 683, 958
DdeI CTNAG 8 cut(s) 24, 198, 420, 491, 678, 726, 848, 853
DpnI GATC 3 cut(s) 12, 485, 640
DpnII GATC 3 cut(s) 10, 483, 638
EciI GGCGGA 1 cut(s) 496
Eco105I TACGTA 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 835
Eco81I CCTNAGG 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 835
EcoO65I GGTNACC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 880
EcoT22I ATGCAT 2 cut(s) 385, 394
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 4 cut(s) 208, 233, 740, 848
FauI CCCGC 2 cut(s) 123, 209
FblI GTMKAC 1 cut(s) 937
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 5 cut(s) 44, 146, 320, 370, 809
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 4 cut(s) 600, 609, 741, 973
GlaI GCGC 4 cut(s) 75, 215, 576, 701
GluI GCNGC 1 cut(s) 585
GsaI CCCAGC 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 2 cut(s) 20, 372
HapII CCGG 2 cut(s) 38, 85
HgaI GACGC 1 cut(s) 220
HhaI GCGC 4 cut(s) 76, 216, 577, 702
Hin6I GCGC 4 cut(s) 74, 214, 575, 700
HinP1I GCGC 4 cut(s) 74, 214, 575, 700
HinfI GANTC 4 cut(s) 113, 164, 503, 596
HpaII CCGG 2 cut(s) 38, 85
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 938
Hpy188I TCNGA 3 cut(s) 94, 463, 508
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 938
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 54, 532, 643
HpyCH4III ACNGT 3 cut(s) 48, 70, 553
HpyCH4IV ACGT 4 cut(s) 403, 592, 685, 940
HpyCH4V TGCA 6 cut(s) 235, 383, 392, 669, 788, 928
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 389, 523, 581, 618, 779
HpyF3I CTNAG 8 cut(s) 24, 198, 420, 491, 678, 726, 848, 853
HpySE526I ACGT 4 cut(s) 403, 592, 685, 940
HspAI GCGC 4 cut(s) 74, 214, 575, 700
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 10, 483, 638
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 3 cut(s) 392, 401, 614
MaeI CTAG 4 cut(s) 600, 609, 741, 973
MaeII ACGT 4 cut(s) 403, 592, 685, 940
MaeIII GTNAC 2 cut(s) 80, 826
MalI GATC 3 cut(s) 12, 485, 640
MboI GATC 3 cut(s) 10, 483, 638
MboII GAAGA 6 cut(s) 220, 249, 387, 897, 908, 943
MflI RGATCY 2 cut(s) 10, 483
MhlI GDGCHC 2 cut(s) 147, 909
MluCI AATT 2 cut(s) 174, 178
MlyI GAGTC 2 cut(s) 173, 512
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 8 cut(s) 22, 31, 457, 463, 498, 502, 787, 937
Mph1103I ATGCAT 2 cut(s) 385, 394
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 4 cut(s) 173, 177, 240, 345
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 2 cut(s) 38, 85
MspR9I CCNGG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 4 cut(s) 214, 216, 577, 702
MwoI GCNNNNNNNGC 6 cut(s) 136, 389, 523, 581, 618, 779
NaeI GCCGGC 1 cut(s) 39
NdeII GATC 3 cut(s) 10, 483, 638
NgoMIV GCCGGC 1 cut(s) 37
NlaIV GGNNCC 4 cut(s) 153, 371, 485, 836
NmuCI GTSAC 2 cut(s) 80, 826
NsiI ATGCAT 2 cut(s) 385, 394
NspI RCATGY 3 cut(s) 239, 665, 878
PacI TTAATTAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 665
PciI ACATGT 1 cut(s) 874
PctI GAATGC 1 cut(s) 669
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 113, 596
PfoI TCCNGGA 1 cut(s) 880
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 2 cut(s) 172, 511
PpsI GAGTC 2 cut(s) 172, 511
Ppu21I YACGTR 2 cut(s) 404, 941
PpuMI RGGWCCY 1 cut(s) 835
PscI ACATGT 1 cut(s) 874
PshBI ATTAAT 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 835
Psp6I CCWGG 1 cut(s) 880
PspEI GGTNACC 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 4 cut(s) 153, 371, 485, 836
PspPI GGNCC 2 cut(s) 370, 835
PspPPI RGGWCCY 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 10, 483
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 5 cut(s) 402, 406, 580, 684, 959
RsaNI GTAC 5 cut(s) 401, 405, 579, 683, 958
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 4 cut(s) 173, 177, 240, 345
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 3 cut(s) 10, 483, 638
Sau96I GGNCC 2 cut(s) 370, 835
SchI GAGTC 2 cut(s) 173, 512
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 2 cut(s) 147, 909
SfaNI GCATC 3 cut(s) 392, 401, 614
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 1 cut(s) 240
SnaBI TACGTA 1 cut(s) 404
SphI GCATGC 1 cut(s) 665
Sse9I AATT 2 cut(s) 174, 178
SsiI CCGC 5 cut(s) 130, 216, 266, 481, 933
SspMI CTAG 4 cut(s) 600, 609, 741, 973
StyD4I CCNGG 1 cut(s) 880
TaaI ACNGT 3 cut(s) 48, 70, 553
TaiI ACGT 4 cut(s) 406, 595, 688, 943
TasI AATT 2 cut(s) 174, 178
TfiI GAWTC 2 cut(s) 113, 596
Tru1I TTAA 4 cut(s) 173, 177, 240, 345
Tru9I TTAA 4 cut(s) 173, 177, 240, 345
TscAI CASTG 2 cut(s) 835, 861
TseFI GTSAC 2 cut(s) 80, 826
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 2 cut(s) 80, 826
TspDTI ATGAA 5 cut(s) 249, 623, 678, 779, 943
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 835, 861
VpaK11BI GGWCC 1 cut(s) 835
VspI ATTAAT 1 cut(s) 177
XceI RCATGY 3 cut(s) 239, 665, 878
XmiI GTMKAC 1 cut(s) 937
XspI CTAG 4 cut(s) 600, 609, 741, 973
Zsp2I ATGCAT 2 cut(s) 385, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.