RLG00000003062

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017455
Physical Location & Seq
Reverse (-)
43835199 .. 43837674
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003062

Sequence Viewer

Length: 1044 bp
ATGTGGAGCTTCTTTGCTGCCTTGCCGATCAAATCAATCAGCGCCGCCTTAATGTTGATATGCACGTCTTCCCTATCAGTCCTCAATTCGCCTCTGAATCTCTGTAAGCCCTTCATGAATGCTATCTCTATTCTCAACAGTGATGAATCCCTAATAGGCTTTGTCGAAGGAGATGGACTCCATGAAGCGCTTGAAGGTGTCGGTGACGCCCTCCTCGAAGCGACCGCCCTAGACCTTGGCGTCCTTGGGCTTGGTGGTGGCGCATTGGAGGTCGAGCTTGTGCATGGGTCTGTGAGAGGAGGGTGTGATCGACAAAGGAAAGAGATTGGTGGACTGGTGGTCAAGCTGCGACTTTTCCCACAGAAGAAATCTGGGTGGGTGATGTCGGCACCGGAACTCCCTGTCACCGGCGTTACTCGTACCAGGGATGAACGTGATTCTGAGATAGTTCTTCCTGTCGATCAATATGGTGGGGCAATGGAGTTGGATCCGGGGACGACCGGAGACGAGCTGGAGGGCCAAAAGCATGCAAAACGGAGGAAAGTGGCGACGTCGTCTGGGCCGTCTGCTACGCCGGCGGCGGTCTCTTCTGTGATGAGTTATTTAAGGGATGTGCCTGTGATGGTGGCGACAGATTTGGGATCTGTTTTAATGGACTTACCAATATTGGAGGCTGGGTATGGTAAGCAATTTGAGTCTGCATTGGGGTCGAAAGCTATCTCCATTCTTGATCCGGTTCCTCCGCAGATTCCCTTTACAGACAATGTTGTAGTTGAGTCAACTTTTAATTACAATACGCGGGATTCTCTCCCTACTACTTCGGATATTAATTTGAATGGGAGTGGGCTGGTGACGAATCAATTGATTGATGGGCCTAAAGGTTTTAACCATGATGATACAAGTGTGGGTGTTAGGGATAGTTGTGAGGTGGGGTCTATTAAGAAGAAGGGTAGTGGACGTAAGAGGGAGGGGACTCCCCATGCAACTCATGCACCTCATGCACCCCATGCAATCCATGCAAATCATGCTTCCCATGCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

36.62

Weight (kDa)

5.66

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 388
AccII CGCG 1 cut(s) 799
AciI CCGC 6 cut(s) 45, 225, 578, 581, 743, 799
AclWI GGATC 4 cut(s) 482, 495, 649, 725
AcyI GRCGYC 3 cut(s) 207, 240, 551
AfaI GTAC 1 cut(s) 421
AfeI AGCGCT 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 194, 835
AhdI GACNNNNNGTC 1 cut(s) 338
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 5 cut(s) 9, 277, 346, 511, 716
AluI AGCT 5 cut(s) 9, 277, 346, 511, 716
Alw26I GTCTC 2 cut(s) 498, 589
AlwI GGATC 4 cut(s) 482, 495, 649, 725
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 3 cut(s) 517, 560, 872
ApeKI GCWGC 2 cut(s) 17, 346
AseI ATTAAT 1 cut(s) 828
AspLEI GCGC 3 cut(s) 44, 190, 263
AspS9I GGNCC 3 cut(s) 517, 560, 872
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 4 cut(s) 215, 391, 397, 862
BaeI ACNNNNGTAYC 2 cut(s) 888, 921
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 4, 333
BccI CCATC 3 cut(s) 167, 616, 863
BceAI ACGGC 1 cut(s) 547
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 1 cut(s) 424
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 498, 589
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 2 cut(s) 45, 191
BisI GCNGC 4 cut(s) 18, 45, 347, 579
BlsI GCNGC 4 cut(s) 19, 46, 348, 580
Bme1390I CCNGG 2 cut(s) 424, 492
BmeRI GACNNNNNGTC 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 3 cut(s) 517, 560, 872
BmiI GGNNCC 3 cut(s) 390, 489, 738
BmrFI CCNGG 2 cut(s) 424, 492
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 162, 194
BpmI CTGGAG 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 492
BsaHI GRCGYC 3 cut(s) 207, 240, 551
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 4 cut(s) 235, 244, 423, 491
BsaWI WCCGGW 3 cut(s) 391, 500, 733
BsaXI ACNNNNNCTCC 4 cut(s) 381, 411, 662, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 2 cut(s) 407, 574
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 4 cut(s) 235, 244, 423, 491
BseGI GGATG 2 cut(s) 433, 616
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 203, 312
BseXI GCAGC 2 cut(s) 4, 333
BseYI CCCAGC 1 cut(s) 674
Bsh1236I CGCG 1 cut(s) 799
Bsh1285I CGRYCG 2 cut(s) 225, 501
BshFI GGCC 3 cut(s) 519, 562, 874
BshNI GGYRCC 1 cut(s) 388
BsiEI CGRYCG 2 cut(s) 225, 501
BsiSI CCGG 6 cut(s) 392, 408, 491, 501, 575, 734
BslFI GGGAC 2 cut(s) 508, 985
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 498, 589
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 2 cut(s) 508, 985
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 3 cut(s) 519, 562, 874
Bso31I GGTCTC 1 cut(s) 589
Bsp143I GATC 6 cut(s) 27, 307, 460, 487, 641, 730
BspACI CCGC 6 cut(s) 45, 225, 578, 581, 743, 799
BspANI GGCC 3 cut(s) 519, 562, 874
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 799
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 390, 489, 738
BspPI GGATC 4 cut(s) 482, 495, 649, 725
BspT107I GGYRCC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 2 cut(s) 407, 574
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 2 cut(s) 407, 574
BssECI CCNNGG 4 cut(s) 235, 244, 423, 491
BssMI GATC 6 cut(s) 27, 307, 460, 487, 641, 730
BssNI GRCGYC 3 cut(s) 207, 240, 551
BssT1I CCWWGG 2 cut(s) 235, 244
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 592
BstACI GRCGYC 3 cut(s) 207, 240, 551
BstAPI GCANNNNNTGC 5 cut(s) 989, 998, 1007, 1016, 1025
BstC8I GCNNGC 2 cut(s) 528, 576
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 433, 616
BstFNI CGCG 1 cut(s) 799
BstH2I RGCGCY 2 cut(s) 45, 191
BstHHI GCGC 3 cut(s) 44, 190, 263
BstKTI GATC 6 cut(s) 30, 310, 463, 490, 644, 733
BstMAI GTCTC 2 cut(s) 498, 589
BstMBI GATC 6 cut(s) 27, 307, 460, 487, 641, 730
BstMCI CGRYCG 2 cut(s) 225, 501
BstMWI GCNNNNNNNGC 7 cut(s) 575, 989, 998, 1007, 1016, 1025, 1034
BstNI CCWGG 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 422, 490
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 2 cut(s) 4, 333
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 487, 641
BstYI RGATCY 2 cut(s) 487, 641
BsuRI GGCC 3 cut(s) 519, 562, 874
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 433, 616
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 528, 576
CciI TCATGA 1 cut(s) 114
CfoI GCGC 3 cut(s) 44, 190, 263
Cfr10I RCCGGY 2 cut(s) 407, 574
Cfr13I GGNCC 3 cut(s) 517, 560, 872
CseI GACGC 2 cut(s) 215, 229
Csp6I GTAC 1 cut(s) 420
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 1 cut(s) 441
DpnI GATC 6 cut(s) 29, 309, 462, 489, 643, 732
DpnII GATC 6 cut(s) 27, 307, 460, 487, 641, 730
DrdI GACNNNNNNGTC 1 cut(s) 239
DriI GACNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 592
Eam1105I GACNNNNNGTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 592
Eco130I CCWWGG 2 cut(s) 235, 244
Eco31I GGTCTC 1 cut(s) 589
Eco47III AGCGCT 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 235, 244
ErhI CCWWGG 2 cut(s) 235, 244
Esp3I CGTCTC 1 cut(s) 498
FaqI GGGAC 2 cut(s) 508, 985
FauI CCCGC 1 cut(s) 792
Fnu4HI GCNGC 4 cut(s) 18, 45, 347, 579
FokI GGATG 2 cut(s) 440, 623
Fsp4HI GCNGC 4 cut(s) 18, 45, 347, 579
FspBI CTAG 1 cut(s) 230
GlaI GCGC 3 cut(s) 43, 189, 262
GluI GCNGC 4 cut(s) 18, 45, 347, 579
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 533
HaeII RGCGCY 2 cut(s) 45, 191
HaeIII GGCC 3 cut(s) 519, 562, 874
HapII CCGG 6 cut(s) 392, 408, 491, 501, 575, 734
HgaI GACGC 2 cut(s) 215, 229
HhaI GCGC 3 cut(s) 44, 190, 263
Hin1I GRCGYC 3 cut(s) 207, 240, 551
Hin6I GCGC 3 cut(s) 42, 188, 261
HinP1I GCGC 3 cut(s) 42, 188, 261
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HpaII CCGG 6 cut(s) 392, 408, 491, 501, 575, 734
HphI GGTGA 4 cut(s) 215, 391, 397, 862
Hpy166II GTNNAC 3 cut(s) 332, 780, 956
Hpy188I TCNGA 3 cut(s) 96, 442, 823
Hpy188III TCNNGA 2 cut(s) 115, 728
Hpy8I GTNNAC 3 cut(s) 332, 780, 956
Hpy99I CGWCG 2 cut(s) 553, 556
HpyAV CCTTC 4 cut(s) 121, 161, 188, 940
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 5 cut(s) 65, 433, 551, 958, 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 575, 989, 998, 1007, 1016, 1025, 1034
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 5 cut(s) 65, 433, 551, 958, 1039
Hsp92I GRCGYC 3 cut(s) 207, 240, 551
HspAI GCGC 3 cut(s) 42, 188, 261
KroI GCCGGC 1 cut(s) 574
KroNI GCCGGC 1 cut(s) 576
Kzo9I GATC 6 cut(s) 27, 307, 460, 487, 641, 730
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 2 cut(s) 4, 333
MaeI CTAG 1 cut(s) 230
MaeII ACGT 5 cut(s) 65, 433, 551, 958, 1039
MaeIII GTNAC 4 cut(s) 203, 403, 412, 850
MalI GATC 6 cut(s) 29, 309, 462, 489, 643, 732
MboI GATC 6 cut(s) 27, 307, 460, 487, 641, 730
MboII GAAGA 5 cut(s) 60, 376, 443, 579, 955
MfeI CAATTG 1 cut(s) 860
MflI RGATCY 2 cut(s) 487, 641
MluCI AATT 5 cut(s) 85, 689, 787, 829, 860
MlyI GAGTC 4 cut(s) 171, 704, 785, 967
MmeI TCCRAC 1 cut(s) 465
MreI CGCCGGCG 1 cut(s) 574
MroNI GCCGGC 1 cut(s) 574
MseI TTAA 7 cut(s) 50, 605, 650, 786, 828, 885, 939
MspI CCGG 6 cut(s) 392, 408, 491, 501, 575, 734
MspR9I CCNGG 2 cut(s) 424, 492
MunI CAATTG 1 cut(s) 860
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 7 cut(s) 575, 989, 998, 1007, 1016, 1025, 1034
NaeI GCCGGC 1 cut(s) 576
NciI CCSGG 1 cut(s) 492
NdeII GATC 6 cut(s) 27, 307, 460, 487, 641, 730
NgoMIV GCCGGC 1 cut(s) 574
NlaIV GGNNCC 3 cut(s) 390, 489, 738
NmuCI GTSAC 3 cut(s) 203, 403, 850
NspI RCATGY 1 cut(s) 530
PaeI GCATGC 1 cut(s) 530
PagI TCATGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 560
PctI GAATGC 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 576
PfeI GAWTC 6 cut(s) 97, 146, 437, 748, 803, 856
PflFI GACNNNGTC 1 cut(s) 553
PkrI GCNGC 4 cut(s) 19, 46, 348, 580
PleI GAGTC 4 cut(s) 171, 703, 784, 967
PpsI GAGTC 4 cut(s) 171, 703, 784, 967
PshBI ATTAAT 1 cut(s) 828
Psp6I CCWGG 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 3 cut(s) 390, 489, 738
PspPI GGNCC 3 cut(s) 517, 560, 872
PsuI RGATCY 2 cut(s) 487, 641
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SaqAI TTAA 7 cut(s) 50, 605, 650, 786, 828, 885, 939
SatI GCNGC 4 cut(s) 18, 45, 347, 579
Sau3AI GATC 6 cut(s) 27, 307, 460, 487, 641, 730
Sau96I GGNCC 3 cut(s) 517, 560, 872
SchI GAGTC 4 cut(s) 171, 704, 785, 967
ScrFI CCNGG 2 cut(s) 424, 492
SgrAI CRCCGGYG 2 cut(s) 407, 574
SphI GCATGC 1 cut(s) 530
Sse9I AATT 5 cut(s) 85, 689, 787, 829, 860
SsiI CCGC 6 cut(s) 45, 225, 578, 581, 743, 799
SspI AATATT 1 cut(s) 666
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 422, 490
StyI CCWWGG 2 cut(s) 235, 244
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 5 cut(s) 68, 436, 554, 961, 1042
TaqI TCGA 6 cut(s) 165, 216, 273, 310, 459, 710
TasI AATT 5 cut(s) 85, 689, 787, 829, 860
TauI GCSGC 2 cut(s) 47, 581
TfiI GAWTC 6 cut(s) 97, 146, 437, 748, 803, 856
Tru1I TTAA 7 cut(s) 50, 605, 650, 786, 828, 885, 939
Tru9I TTAA 7 cut(s) 50, 605, 650, 786, 828, 885, 939
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 3 cut(s) 203, 403, 850
TseI GCWGC 2 cut(s) 17, 346
Tsp45I GTSAC 3 cut(s) 203, 403, 850
TspDTI ATGAA 5 cut(s) 103, 131, 159, 198, 444
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 553
VspI ATTAAT 1 cut(s) 828
XceI RCATGY 1 cut(s) 530
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.