RLG00000015927

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017455
Physical Location & Seq
Forward (+)
2505458 .. 2511036
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015927

Sequence Viewer

Length: 810 bp
ATGACAGCGCCGGAGCTTCCGACGGCGGGGTTTATCAGATCTAGGGAGGAGAGAGACTCCGGAGTGAGTGAACAGGAGATTGGGGCGGGTGATGCTATGGATGTTGATGCGGTGGCTTCTCGGGGTATATTGGAGGATCAACAGTTTGCTAAACGGAGGAAAACGGAGGCGCCGGATGGTCGGGAGATTGGTTCGGTGGTGGCGTTAAAGACGGGGAGTGATTTGAGGGATGTACCGGTGAAATTGGCGCCGGAATTGCAGTCTGCTTTAATTACTGTACCAATTTCGGAGGCCGCTTTTGGGAAGAAAATCGGGGACTTATTACCTTTGAACTATGTTTCTCGTCTTGATCCGGAATCACCGCAGTTACCTTCCAAGGAGGTGGATGTTAGGTCCTCTTATTTGAAATTGAAACAGCAAGAGTCTTTTACTCTTTTATCCGAAGCGGGTTTGGAGGAAACTGGGCTGAATGGAGAGTTCTTGATTGGTGGGCCCAAGCTGACTAAAGGTGGGATTATTACTCCCCCTCCCTCTTTGGGCCATGGTCGTGGTAGTGAAGTAGGAAAAGGAGGCAAAAAGAAAAGTGCTGGTAGGTCCCATGCACCCCATGCACGTAAAGGCAAGTATGCCAAAGCAGGATTTGCACCTGACGAGAAATTTGTTTTGTGGACTGAAACTTGTGGATCTGAGGTGAGATTTCGCCCTGACGTGAAGAATCTCAAGACCGCCTTCTCTTCCTTGGCAAGGTTCCAGAGGGGTCTGAAGCTCAAGCCCATGGCTTTGATCAAGAAGTTGCGCAAGCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.02

Weight (kDa)

9.53

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 797
AccB1I GGYRCC 2 cut(s) 169, 247
AccIII TCCGGA 2 cut(s) 59, 352
AciI CCGC 7 cut(s) 26, 86, 110, 294, 362, 446, 726
AclWI GGATC 3 cut(s) 144, 344, 691
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 1 cut(s) 782
AcyI GRCGYC 2 cut(s) 170, 248
AfaI GTAC 2 cut(s) 234, 279
AfiI CCNNNNNNNGG 4 cut(s) 26, 300, 536, 744
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 331, 406, 412
AjiI CACGTC 1 cut(s) 709
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 4 cut(s) 16, 499, 766, 802
AluI AGCT 4 cut(s) 16, 499, 766, 802
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 3 cut(s) 144, 344, 691
Ama87I CYCGRG 1 cut(s) 120
Aor13HI TCCGGA 2 cut(s) 59, 352
AoxI GGCC 3 cut(s) 291, 491, 538
ApaI GGGCCC 1 cut(s) 495
ApoI RAATTY 1 cut(s) 656
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 4 cut(s) 10, 172, 250, 798
AspS9I GGNCC 5 cut(s) 393, 491, 492, 538, 594
AsuHPI GGTGA 4 cut(s) 101, 250, 351, 703
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 2 cut(s) 393, 594
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 2 cut(s) 169, 247
BanII GRGCYC 1 cut(s) 495
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 39
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 42
BfoI RGCGCY 3 cut(s) 11, 173, 251
BglII AGATCT 1 cut(s) 38
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 2 cut(s) 393, 594
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 5 cut(s) 393, 491, 492, 538, 594
BmiI GGNNCC 5 cut(s) 171, 249, 493, 596, 749
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 82, 97
BmuI ACTGGG 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpuEI CTTGAG 2 cut(s) 704, 752
BsaAI YACGTR 1 cut(s) 614
BsaHI GRCGYC 2 cut(s) 170, 248
BsaJI CCNNGG 4 cut(s) 375, 541, 738, 774
BsaWI WCCGGW 3 cut(s) 59, 235, 352
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 300, 536, 744
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 466
BseAI TCCGGA 2 cut(s) 59, 352
BseDI CCNNGG 4 cut(s) 375, 541, 738, 774
BseGI GGATG 4 cut(s) 106, 181, 235, 391
BseLI CCNNNNNNNGG 4 cut(s) 26, 300, 536, 744
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 495
BshFI GGCC 3 cut(s) 293, 493, 540
BshNI GGYRCC 2 cut(s) 169, 247
BshTI ACCGGT 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 6 cut(s) 11, 60, 173, 236, 251, 353
BslFI GGGAC 2 cut(s) 329, 580
BslI CCNNNNNNNGG 4 cut(s) 26, 300, 536, 744
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 2 cut(s) 329, 580
BsnI GGCC 3 cut(s) 293, 493, 540
BsoBI CYCGRG 1 cut(s) 120
Bsp120I GGGCCC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 495
Bsp13I TCCGGA 2 cut(s) 59, 352
Bsp143I GATC 5 cut(s) 38, 136, 349, 683, 783
Bsp19I CCATGG 2 cut(s) 541, 774
BspACI CCGC 7 cut(s) 26, 86, 110, 294, 362, 446, 726
BspANI GGCC 3 cut(s) 293, 493, 540
BspCNI CTCAG 1 cut(s) 679
BspEI TCCGGA 2 cut(s) 59, 352
BspLI GGNNCC 5 cut(s) 171, 249, 493, 596, 749
BspPI GGATC 3 cut(s) 144, 344, 691
BspT107I GGYRCC 2 cut(s) 169, 247
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 4 cut(s) 375, 541, 738, 774
BssMI GATC 5 cut(s) 38, 136, 349, 683, 783
BssNI GRCGYC 2 cut(s) 170, 248
BssT1I CCWWGG 4 cut(s) 375, 541, 738, 774
Bst4CI ACNGT 2 cut(s) 144, 277
Bst6I CTCTTC 1 cut(s) 739
BstACI GRCGYC 2 cut(s) 170, 248
BstAPI GCANNNNNTGC 2 cut(s) 608, 641
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 800
BstDEI CTNAG 1 cut(s) 687
BstDSI CCRYGG 2 cut(s) 541, 774
BstENI CCTNNNNNAGG 1 cut(s) 742
BstF5I GGATG 4 cut(s) 106, 181, 235, 391
BstH2I RGCGCY 3 cut(s) 11, 173, 251
BstHHI GCGC 4 cut(s) 10, 172, 250, 798
BstKTI GATC 5 cut(s) 41, 139, 352, 686, 786
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 5 cut(s) 38, 136, 349, 683, 783
BstMWI GCNNNNNNNGC 4 cut(s) 92, 256, 608, 641
BstSLI GKGCMC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 38, 683
BstXI CCANNNNNNTGG 2 cut(s) 382, 548
BstYI RGATCY 2 cut(s) 38, 683
BsuRI GGCC 3 cut(s) 293, 493, 540
BtgI CCRYGG 2 cut(s) 541, 774
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 4 cut(s) 106, 181, 235, 391
Cac8I GCNNGC 1 cut(s) 800
CfoI GCGC 4 cut(s) 10, 172, 250, 798
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 5 cut(s) 393, 491, 492, 538, 594
Csp6I GTAC 2 cut(s) 233, 278
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 4 cut(s) 542, 599, 608, 775
CviQI GTAC 2 cut(s) 233, 278
DdeI CTNAG 1 cut(s) 687
DinI GGCGCC 2 cut(s) 171, 249
DpnI GATC 5 cut(s) 40, 138, 351, 685, 785
DpnII GATC 5 cut(s) 38, 136, 349, 683, 783
Eam1104I CTCTTC 1 cut(s) 739
EarI CTCTTC 1 cut(s) 739
Eco130I CCWWGG 4 cut(s) 375, 541, 738, 774
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 393, 594
Eco57I CTGAAG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 742
EcoO109I RGGNCCY 2 cut(s) 393, 594
EcoT14I CCWWGG 4 cut(s) 375, 541, 738, 774
EcoT38I GRGCYC 1 cut(s) 495
EgeI GGCGCC 2 cut(s) 171, 249
EheI GGCGCC 2 cut(s) 171, 249
ErhI CCWWGG 4 cut(s) 375, 541, 738, 774
FaeI CATG 4 cut(s) 545, 602, 611, 778
FaiI YATR 8 cut(s) 98, 128, 336, 543, 600, 609, 627, 776
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 2 cut(s) 329, 580
FatI CATG 4 cut(s) 541, 598, 607, 774
FauI CCCGC 3 cut(s) 19, 79, 439
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 4 cut(s) 113, 188, 242, 398
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 42
FspI TGCGCA 1 cut(s) 797
GlaI GCGC 4 cut(s) 9, 171, 249, 797
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 3 cut(s) 11, 173, 251
HaeIII GGCC 3 cut(s) 293, 493, 540
HapII CCGG 6 cut(s) 11, 60, 173, 236, 251, 353
HhaI GCGC 4 cut(s) 10, 172, 250, 798
Hin1I GRCGYC 2 cut(s) 170, 248
Hin1II CATG 4 cut(s) 545, 602, 611, 778
Hin6I GCGC 4 cut(s) 8, 170, 248, 796
HinP1I GCGC 4 cut(s) 8, 170, 248, 796
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 4 cut(s) 56, 356, 422, 715
HpaII CCGG 6 cut(s) 11, 60, 173, 236, 251, 353
HphI GGTGA 4 cut(s) 101, 250, 351, 703
Hpy166II GTNNAC 2 cut(s) 71, 669
Hpy188I TCNGA 6 cut(s) 21, 38, 289, 442, 688, 762
Hpy188III TCNNGA 8 cut(s) 60, 182, 347, 353, 481, 721, 751, 787
Hpy8I GTNNAC 2 cut(s) 71, 669
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 381, 739
HpyCH4III ACNGT 2 cut(s) 144, 277
HpyCH4IV ACGT 2 cut(s) 613, 708
HpyCH4V TGCA 4 cut(s) 259, 602, 611, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 256, 608, 641
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 2 cut(s) 613, 708
Hsp92I GRCGYC 2 cut(s) 170, 248
Hsp92II CATG 4 cut(s) 545, 602, 611, 778
HspAI GCGC 4 cut(s) 8, 170, 248, 796
KasI GGCGCC 2 cut(s) 169, 247
Kpn2I TCCGGA 2 cut(s) 59, 352
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 5 cut(s) 38, 136, 349, 683, 783
LmnI GCTCC 1 cut(s) 13
LweI GCATC 2 cut(s) 82, 97
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 613, 708
MaeIII GTNAC 1 cut(s) 366
MalI GATC 5 cut(s) 40, 138, 351, 685, 785
MboI GATC 5 cut(s) 38, 136, 349, 683, 783
MboII GAAGA 3 cut(s) 316, 724, 726
MflI RGATCY 2 cut(s) 38, 683
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 6 cut(s) 242, 254, 270, 282, 407, 656
Mly113I GGCGCC 2 cut(s) 170, 248
MlyI GAGTC 2 cut(s) 50, 431
MmeI TCCRAC 1 cut(s) 44
MroI TCCGGA 2 cut(s) 59, 352
MseI TTAA 2 cut(s) 206, 269
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 6 cut(s) 11, 60, 173, 236, 251, 353
MwoI GCNNNNNNNGC 4 cut(s) 92, 256, 608, 641
NarI GGCGCC 2 cut(s) 170, 248
NcoI CCATGG 2 cut(s) 541, 774
NdeII GATC 5 cut(s) 38, 136, 349, 683, 783
NlaIII CATG 4 cut(s) 545, 602, 611, 778
NlaIV GGNNCC 5 cut(s) 171, 249, 493, 596, 749
NsbI TGCGCA 1 cut(s) 797
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 2 cut(s) 356, 715
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 2 cut(s) 50, 430
PluTI GGCGCC 2 cut(s) 173, 251
PpsI GAGTC 2 cut(s) 50, 430
Ppu21I YACGTR 1 cut(s) 614
PpuMI RGGWCCY 2 cut(s) 393, 594
Psp5II RGGWCCY 2 cut(s) 393, 594
PspN4I GGNNCC 5 cut(s) 171, 249, 493, 596, 749
PspOMI GGGCCC 1 cut(s) 491
PspPI GGNCC 5 cut(s) 393, 491, 492, 538, 594
PspPPI RGGWCCY 2 cut(s) 393, 594
PsuI RGATCY 2 cut(s) 38, 683
RsaI GTAC 2 cut(s) 234, 279
RsaNI GTAC 2 cut(s) 233, 278
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 2 cut(s) 206, 269
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 5 cut(s) 38, 136, 349, 683, 783
Sau96I GGNCC 5 cut(s) 393, 491, 492, 538, 594
SchI GAGTC 2 cut(s) 50, 431
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 2 cut(s) 82, 97
SfoI GGCGCC 2 cut(s) 171, 249
SinI GGWCC 2 cut(s) 393, 594
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 719, 767
SmoI CTYRAG 2 cut(s) 719, 767
Sse9I AATT 6 cut(s) 242, 254, 270, 282, 407, 656
SsiI CCGC 7 cut(s) 26, 86, 110, 294, 362, 446, 726
SspDI GGCGCC 2 cut(s) 169, 247
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 4 cut(s) 375, 541, 738, 774
TaaI ACNGT 2 cut(s) 144, 277
TaiI ACGT 2 cut(s) 616, 711
TasI AATT 6 cut(s) 242, 254, 270, 282, 407, 656
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 356, 715
Tru1I TTAA 2 cut(s) 206, 269
Tru9I TTAA 2 cut(s) 206, 269
TspGWI ACGGA 2 cut(s) 169, 179
VpaK11BI GGWCC 2 cut(s) 393, 594
XagI CCTNNNNNAGG 1 cut(s) 742
XapI RAATTY 1 cut(s) 656
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.