Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006478

Physical Location & Seq

Genomic Coordinates Forward (+)

37633153 .. 37648423

Gene Structure 15271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002657

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3861 bp

ATGGCGCTTCTCCGCCTACGGCTTGTCGTATTCCTCTCTCTCTTCCAGGTGTTATGGATTCTGCCTCTGGCATTTGCTCAGAGTTCTATAAAGTCCAATGTTTCCAGGCATTCTGAAGAATATTGTGCTATGTATGACATTTGTGGTAAACGTACTGATGGAAAAGTATTGAACTGTCCGTACGGTTCCCCATCTGTAAAGCCAAGTGACTTACTTTCATCTAAGATCCAAAGTTTGTGTCCAACAATTACTGGAAATGTCTGTTGTACAGCAGCTCAATTTGACACATTACGGACATCGGTTCAGCAAGCAATTCCCTTTCTTGTAGGATGTCCAGCATGCTTAAGAAACTTTTTGAACCTCTTCTGTGAGCTTACCTGCTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCTGTAAACAAGGTAAATAACAATATGACCGTTGGAGGGATTGATTATTACATAAGTGATACTTTTGGTGAGGGGTTGTATGACTCCTGCAAGGATGTCAAGTTTGGTACCATGAATTCTCGAGCTATGGAATTCATTGGTGCTGGTTCTCAAAATTTTAAAGAGTGGTTTACTTTTATCGGTAGACAAGCAGCTCCTACTCTGCCAGGTTCACCATTTGCCATTAGATTCCGGTCAAATGCTACTGGCTCATCCGAGATGATACCTATGAATGTATCTACTTATTCTTGTGGTGATAATTCACTGGGCTGTTCCTGTGGTGATTGCCCGTCATCCACAGTTTGTTCTAACACAGCTGTTCCAGTTTCCCCCAAAAAAGGGTCATGTACAGTGAAAATTGGATCTATTAAGGCAAAATGTATTGACCTTGCTGTCGCCGTTCTATATATCGTACTGGTTTCTGTGTTTTTTGGGTGGGGTTTGTTTAATTGGACTAGAAAGCAAACCCCGGCTTCTAGGAAAAAACCGTTGTGGAATAATGTAATGGATGATGGCGAAGTTCAGTCTATACGCAGGGAGAAGAACGAGAATCCTCCAATGCAGGTTCTTGAAGATCCTCCCCACATGAGAAGCGGTGTCCAACTTTCAATTGTGCAAGGATACATGTCAAAATTTTATAGGGGATATGGGAAGTGGGTTGCTAGAAATCCAATCACAGTGTTGGGTTCATCGTCTGCAATAGTTCTTCTACTTTGTCTTGGTCTTATCCGCTTCAAGGTGGAAACAAGGCCTGAGAAGCTATGGGTAGGGCCAGGGAGTAAAGCAGCAGAGGAGAAGCAATTTTTTGATAGTCACCTAGCCCCTTTTTACAGAATTGAGCAGCTTATATTAGCAACAATACCAGATGCCAAGCATGGTAAGTCACCTAGTATTGTGACGGAGGACAACATCAAGTTACTTTTTGAGATACAAAAAAAGGTTGACGGAATTAAAGCAAATTATTCTGGGTCAATGATATCTCTTGCTGATATCTGCATGAAGCCACTAGACCAAGATTGCGCCAGTCAAAGTGTCATACAGTATTTCAAATTGGATCCTGAAAATTTTGACAATTATGGTGGGATTGAACACCTAATTTATTGTTTTGAGCACTATTCCTCTGCTGACAAATGTATGAGTGCATATAAAGCTCCTCTTGATCCCAGCACTGCTTTAGGTGGTTTCTCTGGGAAAAACTATTCCGAGGCATCAGCATTTATAATAACTTATCCTGTAAACAATGCTATTAATAAAGAGGGGAATGAAACTGAAAGAGCAGTGGCATGGGAGAAGGCCTTTATTGAGTTGGCAAAGGCTGAGCTGTTGCAAATGATGCAATCTAAAAACTTAACACTATCTTTCACGTCGGAGAGTTCCGTTGAAGAAGAACTTAAGAGAGAAAGCACTGCAGATGCTATTACAATATTGATAAGCTATCTTGTGATGTTCGCTTATATTTCTCTTACTTTGGGTGACTCTCCTCGTTTGTCTTCCTTTTACATTTCATCGAAGGTATTGCTAGGTCTCTCTGGAGTTGTTCTTGTCATGCTCTCCGTTCTTGGATCAGTGGGATTTTTCAGTGCCATTGGAGTTAAATCTACCCTAATTATTATGGAAGTCATCCCATTTCTTGTTCTAGCTGTTGGGGTAGATAATATGTGTATACTGGTTCATGCTGTTAAACGGCAACCATTGACGTTGCCTTTAGAAGGGCGAATAAGCAATGCACTTGTGGAAGTTGGACCATCCATAACTCTTGCTAGTCTATCAGAAGTTTTAGCATTTGCGGTTGGCAGCTTTATTCCTATGCCAGCTTGTCGTGTGTTCTCCATGTTTGCTGCACTAGCTGTTCTTTTGGACTTCCTCCTTCAAGTTACTGCTTTTGTAGCTCTGATTGTTCTTGATTTTCGCCGAACTGAGGATAATAGGGTTGATTGTTTTCCTTGTATGAAAGTTTCATCATATACCAACTCTGATAAAGGCATTGAAGTGAGAAAACCAGGTTTGCTGGCACGCTATATGAAGGAAATCCATGCTCCCATTCTAAGTGTTTGGGTTGTTAAGATAGTTGTCATTTCCATTTTTGTTGCGTTTTCACTGGCTAGCATTGCGTTGTGCACCAGAATTCAGCCTGGTTTGGAACAAAAAATTGTTCTTCCCCAAGATTCCTATCTTCAGGGTTATTTCAATAATATATCAGAGTATCTCCGAATTGGACCCCCACTATATTTTGTTGTGAAGAACTACAACTATAGTTCAGAATCAAGACATACAAACCAATTGTGCTCCATTAGCCAATGTGATTCAGATTCTCTTTTGAATGAGATTGCAAGAGCATCCTTAATTCCAGAATCAAGTTACATTGCTAAGCCTGCTGCTTCATGGCTTGATGATTTTCTTGTGTGGATTTCCCCAGAAGCTTTTGGGTGCTGTCGGAAGTTTACAAATGCAACTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTCTTCCTCTGATGGTTCCTGTAGCCTGGGTGGAGTGTGCAAAGATTGTACCACGTGTTTTCGTCACTCGGATCTGCATAATGGTCGTCCATCGACCACACAATTTGAAGAAAAACTTCCATGGTTCCTCGATGCTCTGCCCTCTTCAGATTGTGCTAAAGGTGGCCATGGAGCTTACACTAGCAGTGTGGAATTGAAAGGCTATGAAAGTGGAATTATTCAAGCGTCATCATTTCGTACATATCATACACCTCTCAACAAACAGATTGACTATGTAAACTCAATGAGGGCTGCTCGAGAGCTCTGTTCTAGAGTTTCTGATTCTTTGAAGATCGAGATATTCCCATATTCAGTGTTTTACATGTTCTTTGAGCAGTACCTTGATATTTGGAAAACAGCACTTATGAGCCTTTCTATAGCTATTGGTGCTGTATTTATCGTTTGCCTAGTCATCACATGCAGCTTGTGGAGTTCAGCAATTATCCTTTTGGTGTTGGCAATGATTGTTGTAGATCTCATGGGCGTGATGGCAATTCTTCACATTCAATTAAATGCAGTCTCTGTTGTTAACCTTGTTATGGCAGTGGGCATTTCTGTTGAGTTTTGTGTGCATATGACACATGCTTTCTCGGTTAGCACAGGAGATAGAGATCAACGAATAAAGGAGGCTCTGGGTACAATGGGTGCATCTGTCTTCAGTGGAATCACACTTACGAAGTTAGTTGGGGTTATTGTACTTTGTTTCTCGAGAACAGAAGTCTTTGTGGTGTATTACTTTCAAATGTATCTAGCACTAGTTCTTCTTGGTTTCTTACACGGGCTTGTATTTTTGCCGGTGGTGTTGAGCATTTTTGGTCCCCCTTCGAGATGTTTGCTCAGGGAGCAGCAACAAGATCGGCCATCTGTACCATCACAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

1287

Amino Acids

141.57

Weight (kDa)

7.12

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPC1_N	PF16414	40 - 269	8.3e-67	Niemann-Pick C1 N terminus
NPC1_MLD	PF22314	417 - 608	1.5e-38	NPC1, middle luminal domain
Patched	PF02460	631 - 784	1.1e-31	Patched SSD
Sterol-sensing	PF12349	652 - 802	6e-49	Sterol-sensing domain of SREBP cleavage-activation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42470
fragaria_vesca	FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290
malus_domestica	MD06G1009400.v1.1
prunus_persica	Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1
pyrus_communis	pycom06g00780 pycom16g25890
rosa_chinensis	RchiOBHm_Chr7g0215501
rosa_laevigata	RLG00000002657
rosa_multiflora	Rmu_sc0005928.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244190
rosa_rugosa	Rorug07G0154100 Rorug07G0154200
rosa_samantha	Rh7AG290300 Rh7BG282300 Rh7CG310300 Rh7DG294100
rosa_wichuraiana	Rw7G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1673
AasI	GACNNNNNNGTC	1 cut(s)	845
Acc36I	ACCTGC	2 cut(s)	386, 1006
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	598, 2116
AciI	CCGC	4 cut(s)	13, 1047, 1183, 2240
AclWI	GGATC	8 cut(s)	220, 823, 1022, 1502, 1515, 1607, 2023, 3018
AcoI	YGGCCR	2 cut(s)	3103, 3836
AcsI	RAATTY	6 cut(s)	529, 545, 568, 1085, 1516, 2577
AcuI	CTGAAG	4 cut(s)	135, 2612, 3069, 3619
AcvI	CACGTG	1 cut(s)	2994
AfiI	CCNNNNNNNGG	7 cut(s)	450, 791, 792, 1189, 2162, 2371, 3517
AflII	CTTAAG	2 cut(s)	343, 1844
AflIII	ACRYGT	3 cut(s)	1077, 2993, 3300
AhlI	ACTAGT	1 cut(s)	3733
AjiI	CACGTC	1 cut(s)	1818
AjnI	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
Alw21I	GWGCWC	4 cut(s)	1566, 2573, 2741, 3243
Alw26I	GTCTC	2 cut(s)	1982, 3502
Alw44I	GTGCAC	1 cut(s)	2569
AlwI	GGATC	8 cut(s)	220, 823, 1022, 1502, 1515, 1607, 2023, 3018
AlwNI	CAGNNNCTG	1 cut(s)	3500
Ama87I	CYCGRG	3 cut(s)	534, 3234, 3685
AoxI	GGCC	5 cut(s)	1202, 1223, 1746, 3103, 3836
ApaLI	GTGCAC	1 cut(s)	2569
ApoI	RAATTY	6 cut(s)	529, 545, 568, 1085, 1516, 2577
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AseI	ATTAAT	1 cut(s)	1701
Asp700I	GAANNNNTTC	2 cut(s)	362, 3054
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	7, 1475
AspS9I	GGNCC	4 cut(s)	1223, 2195, 2669, 3794
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	7 cut(s)	494, 618, 719, 746, 1259, 1329, 1937
AsuNHI	GCTAGC	1 cut(s)	2555
AvaI	CYCGRG	3 cut(s)	534, 3234, 3685
AvaII	GGWCC	3 cut(s)	2195, 2669, 3794
BaeGI	GKGCMC	1 cut(s)	2573
BalI	TGGCCA	1 cut(s)	3105
BamHI	GGATCC	1 cut(s)	1507
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	3243
BbrPI	CACGTG	1 cut(s)	2994
BbsI	GAAGAC	2 cut(s)	1935, 3625
Bbv12I	GWGCWC	4 cut(s)	1566, 2573, 2741, 3243
BccI	CCATC	9 cut(s)	152, 199, 959, 2206, 2945, 3037, 3460, 3847, 3856
BceAI	ACGGC	3 cut(s)	35, 836, 2153
BcgI	CGANNNNNNTGC	8 cut(s)	1951, 1985, 3005, 3039, 3793, 3815, 3827, 3849
BciT130I	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
BciVI	GTATCC	1 cut(s)	1067
BclI	TGATCA	1 cut(s)	2923
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	2 cut(s)	1982, 3502
BcuI	ACTAGT	1 cut(s)	3733
BfmI	CTRYAG	4 cut(s)	1860, 2704, 2959, 3354
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	2 cut(s)	343, 1844
BfuAI	ACCTGC	2 cut(s)	386, 1006
BfuI	GTATCC	1 cut(s)	1067
BglII	AGATCT	1 cut(s)	3451
BlpI	GCTNAGC	2 cut(s)	1770, 2820
Bme1390I	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
Bme18I	GGWCC	3 cut(s)	2195, 2669, 3794
BmeT110I	CYCGRG	3 cut(s)	534, 3234, 3685
BmgBI	CACGTC	1 cut(s)	1818
BmgT120I	GGNCC	4 cut(s)	1223, 2195, 2669, 3794
BmiI	GGNNCC	7 cut(s)	187, 523, 1509, 2671, 2956, 3065, 3796
BmrFI	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	7 cut(s)	1309, 1670, 1776, 1855, 2798, 3061, 3635
BmtI	GCTAGC	1 cut(s)	2559
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	2 cut(s)	1935, 3625
BplI	GAGNNNNNCTC	2 cut(s)	3217, 3249
BpmI	CTGGAG	1 cut(s)	2004
Bpu10I	CCTNAGC	1 cut(s)	3815
Bpu1102I	GCTNAGC	2 cut(s)	1770, 2820
BpuMI	CCSGG	1 cut(s)	923
BsaAI	YACGTR	1 cut(s)	2994
BsaBI	GATNNNNATC	2 cut(s)	2622, 3588
BsaI	GGTCTC	1 cut(s)	1982
BsaJI	CCNNGG	6 cut(s)	921, 1226, 1656, 2965, 3059, 3106
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	7 cut(s)	450, 791, 792, 1189, 2162, 2371, 3517
Bse118I	RCCGGY	1 cut(s)	3772
Bse1I	ACTGG	8 cut(s)	256, 664, 723, 776, 873, 1476, 2124, 2556
Bse3DI	GCAATG	4 cut(s)	2182, 2559, 2814, 3444
Bse8I	GATNNNNATC	2 cut(s)	2622, 3588
BseBI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
BseDI	CCNNGG	6 cut(s)	921, 1226, 1656, 2965, 3059, 3106
BseGI	GGATG	8 cut(s)	335, 514, 665, 746, 967, 2073, 2198, 2789
BseJI	GATNNNNATC	2 cut(s)	2622, 3588
BseLI	CCNNNNNNNGG	7 cut(s)	450, 791, 792, 1189, 2162, 2371, 3517
BseMI	GCAATG	4 cut(s)	2182, 2559, 2814, 3444
BseMII	CTCAG	5 cut(s)	92, 1197, 1761, 2361, 3829
BseNI	ACTGG	8 cut(s)	256, 664, 723, 776, 873, 1476, 2124, 2556
BseRI	GAGGAG	3 cut(s)	1259, 1596, 1923
BseSI	GKGCMC	1 cut(s)	2573
BseYI	CCCAGC	1 cut(s)	1616
BsgI	GTGCAG	1 cut(s)	2277
BshFI	GGCC	5 cut(s)	1204, 1225, 1748, 3105, 3838
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	4 cut(s)	1566, 2573, 2741, 3243
BsiHKCI	CYCGRG	3 cut(s)	534, 3234, 3685
BsiSI	CCGG	3 cut(s)	646, 923, 3773
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	3780
BslI	CCNNNNNNNGG	7 cut(s)	450, 791, 792, 1189, 2162, 2371, 3517
BsmAI	GTCTC	2 cut(s)	1982, 3502
BsmFI	GGGAC	1 cut(s)	3780
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	5 cut(s)	1204, 1225, 1748, 3105, 3838
Bso31I	GGTCTC	1 cut(s)	1982
BsoBI	CYCGRG	3 cut(s)	534, 3234, 3685
Bsp1286I	GDGCHC	4 cut(s)	1566, 2573, 2741, 3243
Bsp1407I	TGTACA	2 cut(s)	266, 800
Bsp1720I	GCTNAGC	2 cut(s)	1770, 2820
Bsp19I	CCATGG	2 cut(s)	3059, 3106
BspACI	CCGC	4 cut(s)	13, 1047, 1183, 2240
BspANI	GGCC	5 cut(s)	1204, 1225, 1748, 3105, 3838
BspCNI	CTCAG	5 cut(s)	91, 1198, 1762, 2362, 3828
BspLI	GGNNCC	7 cut(s)	187, 523, 1509, 2671, 2956, 3065, 3796
BspMAI	CTGCAG	1 cut(s)	1864
BspMI	ACCTGC	2 cut(s)	386, 1006
BspOI	GCTAGC	1 cut(s)	2559
BspPI	GGATC	8 cut(s)	220, 823, 1022, 1502, 1515, 1607, 2023, 3018
BspT107I	GGYRCC	1 cut(s)	521
BspTI	CTTAAG	2 cut(s)	343, 1844
BspTNI	GGTCTC	1 cut(s)	1982
BsrDI	GCAATG	4 cut(s)	2182, 2559, 2814, 3444
BsrFI	RCCGGY	1 cut(s)	3772
BsrGI	TGTACA	2 cut(s)	266, 800
BsrI	ACTGG	8 cut(s)	256, 664, 723, 776, 873, 1476, 2124, 2556
BssAI	RCCGGY	1 cut(s)	3772
BssECI	CCNNGG	6 cut(s)	921, 1226, 1656, 2965, 3059, 3106
BssNAI	GTATAC	1 cut(s)	2117
BssT1I	CCWWGG	2 cut(s)	3059, 3106
Bst1107I	GTATAC	1 cut(s)	2117
Bst2UI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
Bst4CI	ACNGT	8 cut(s)	176, 185, 445, 754, 805, 942, 1132, 1494
Bst6I	CTCTTC	3 cut(s)	47, 368, 3088
BstAFI	CTTAAG	2 cut(s)	343, 1844
BstAPI	GCANNNNNTGC	1 cut(s)	1786
BstAUI	TGTACA	2 cut(s)	266, 800
BstBAI	YACGTR	1 cut(s)	2994
BstC8I	GCNNGC	7 cut(s)	309, 340, 2265, 2463, 2467, 2557, 2826
BstDEI	CTNAG	8 cut(s)	78, 222, 1206, 1770, 2370, 2498, 2820, 3815
BstDSI	CCRYGG	2 cut(s)	3059, 3106
BstENI	CCTNNNNNAGG	1 cut(s)	2160
BstF5I	GGATG	8 cut(s)	335, 514, 665, 746, 967, 2073, 2198, 2789
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 1475
BstMAI	GTCTC	2 cut(s)	1982, 3502
BstNI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
BstNSI	RCATGY	5 cut(s)	342, 1081, 3304, 3399, 3563
BstSCI	CCNGG	8 cut(s)	45, 104, 619, 921, 1225, 2452, 2584, 2964
BstSFI	CTRYAG	4 cut(s)	1860, 2704, 2959, 3354
BstSLI	GKGCMC	1 cut(s)	2573
BstV2I	GAAGAC	2 cut(s)	1935, 3625
BstX2I	RGATCY	6 cut(s)	225, 815, 1027, 1507, 3010, 3451
BstYI	RGATCY	6 cut(s)	225, 815, 1027, 1507, 3010, 3451
BstZ17I	GTATAC	1 cut(s)	2117
BsuI	GTATCC	1 cut(s)	1067
BsuRI	GGCC	5 cut(s)	1204, 1225, 1748, 3105, 3838
BtgI	CCRYGG	2 cut(s)	3059, 3106
BtrI	CACGTC	1 cut(s)	1818
BtsCI	GGATG	8 cut(s)	335, 514, 665, 746, 967, 2073, 2198, 2789
BtsI	GCAGTG	5 cut(s)	1620, 1737, 1857, 3130, 3528
BveI	ACCTGC	2 cut(s)	386, 1006
Cac8I	GCNNGC	7 cut(s)	309, 340, 2265, 2463, 2467, 2557, 2826
CaiI	CAGNNNCTG	1 cut(s)	3500
CfoI	GCGC	2 cut(s)	7, 1475
Cfr10I	RCCGGY	1 cut(s)	3772
Cfr13I	GGNCC	4 cut(s)	1223, 2195, 2669, 3794
CseI	GACGC	1 cut(s)	3153
CsiI	ACCWGGT	1 cut(s)	2452
CspCI	CAANNNNNGTGG	4 cut(s)	1513, 1548, 3025, 3060
DdeI	CTNAG	8 cut(s)	78, 222, 1206, 1770, 2370, 2498, 2820, 3815
DraI	TTTAAA	1 cut(s)	574
DrdI	GACNNNNNNGTC	1 cut(s)	845
DseDI	GACNNNNNNGTC	1 cut(s)	845
EaeI	YGGCCR	2 cut(s)	3103, 3836
Eam1104I	CTCTTC	3 cut(s)	47, 368, 3088
EarI	CTCTTC	3 cut(s)	47, 368, 3088
Ecl136II	GAGCTC	1 cut(s)	3241
Eco130I	CCWWGG	2 cut(s)	3059, 3106
Eco147I	AGGCCT	2 cut(s)	1204, 1748
Eco24I	GRGCYC	1 cut(s)	3243
Eco31I	GGTCTC	1 cut(s)	1982
Eco32I	GATATC	2 cut(s)	1431, 1444
Eco47I	GGWCC	3 cut(s)	2195, 2669, 3794
Eco53kI	GAGCTC	1 cut(s)	3241
Eco57I	CTGAAG	4 cut(s)	135, 2612, 3069, 3619
Eco72I	CACGTG	1 cut(s)	2994
Eco88I	CYCGRG	3 cut(s)	534, 3234, 3685
EcoICRI	GAGCTC	1 cut(s)	3241
EcoNI	CCTNNNNNAGG	1 cut(s)	2160
EcoRI	GAATTC	3 cut(s)	529, 545, 2577
EcoRII	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
EcoRV	GATATC	2 cut(s)	1431, 1444
EcoT14I	CCWWGG	2 cut(s)	3059, 3106
EcoT38I	GRGCYC	1 cut(s)	3243
ErhI	CCWWGG	2 cut(s)	3059, 3106
FalI	AAGNNNNNCTT	8 cut(s)	460, 492, 1593, 1625, 1827, 1859, 3039, 3071
FaqI	GGGAC	1 cut(s)	3780
FauNDI	CATATG	1 cut(s)	3552
FbaI	TGATCA	1 cut(s)	2923
FblI	GTMKAC	2 cut(s)	598, 2116
FokI	GGATG	8 cut(s)	342, 521, 652, 733, 974, 2060, 2185, 2776
FriOI	GRGCYC	1 cut(s)	3243
GlaI	GCGC	2 cut(s)	6, 1474
GsaI	CCCAGC	1 cut(s)	1620
GsuI	CTGGAG	1 cut(s)	2004
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	1204, 1225, 1748, 3105, 3838
HapII	CCGG	3 cut(s)	646, 923, 3773
HgaI	GACGC	1 cut(s)	3153
HhaI	GCGC	2 cut(s)	7, 1475
Hin6I	GCGC	2 cut(s)	5, 1473
HinP1I	GCGC	2 cut(s)	5, 1473
HincII	GTYRAC	2 cut(s)	1396, 3508
HindII	GTYRAC	2 cut(s)	1396, 3508
HindIII	AAGCTT	1 cut(s)	2871
HpaI	GTTAAC	1 cut(s)	3508
HpaII	CCGG	3 cut(s)	646, 923, 3773
HphI	GGTGA	7 cut(s)	494, 618, 719, 746, 1259, 1329, 1937
Hpy99I	CGWCG	1 cut(s)	1822
HpyAV	CCTTC	6 cut(s)	1738, 1957, 2156, 2330, 2470, 3810
HpyCH4III	ACNGT	8 cut(s)	176, 185, 445, 754, 805, 942, 1132, 1494
HpyCH4IV	ACGT	4 cut(s)	151, 1817, 2150, 2993
HpyF3I	CTNAG	8 cut(s)	78, 222, 1206, 1770, 2370, 2498, 2820, 3815
HpySE526I	ACGT	4 cut(s)	151, 1817, 2150, 2993
HspAI	GCGC	2 cut(s)	5, 1473
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	2923
KspAI	GTTAAC	1 cut(s)	3508
LmnI	GCTCC	6 cut(s)	613, 1609, 2494, 2744, 3110, 3820
LweI	GCATC	7 cut(s)	1309, 1670, 1776, 1855, 2798, 3061, 3635
MabI	ACCWGGT	1 cut(s)	2452
MaeII	ACGT	4 cut(s)	151, 1817, 2150, 2993
MfeI	CAATTG	2 cut(s)	1062, 2732
MflI	RGATCY	6 cut(s)	225, 815, 1027, 1507, 3010, 3451
MhlI	GDGCHC	4 cut(s)	1566, 2573, 2741, 3243
MlsI	TGGCCA	1 cut(s)	3105
MluNI	TGGCCA	1 cut(s)	3105
MlyI	GAGTC	2 cut(s)	491, 1922
MmeI	TCCRAC	6 cut(s)	266, 427, 1078, 1800, 2173, 2867
Mox20I	TGGCCA	1 cut(s)	3105
MroXI	GAANNNNTTC	2 cut(s)	362, 3054
MscI	TGGCCA	1 cut(s)	3105
MslI	CAYNNNNRTG	2 cut(s)	2441, 3461
Msp20I	TGGCCA	1 cut(s)	3105
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	2 cut(s)	343, 1844
MspI	CCGG	3 cut(s)	646, 923, 3773
MspR9I	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
MunI	CAATTG	2 cut(s)	1062, 2732
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
NciI	CCSGG	1 cut(s)	923
NcoI	CCATGG	2 cut(s)	3059, 3106
NdeI	CATATG	1 cut(s)	3552
NheI	GCTAGC	1 cut(s)	2555
NlaIV	GGNNCC	7 cut(s)	187, 523, 1509, 2671, 2956, 3065, 3796
NmuCI	GTSAC	7 cut(s)	206, 409, 1265, 1335, 1348, 1925, 3002
NspI	RCATGY	5 cut(s)	342, 1081, 3304, 3399, 3563
PaeI	GCATGC	1 cut(s)	342
PaeR7I	CTCGAG	3 cut(s)	534, 3234, 3685
PceI	AGGCCT	2 cut(s)	1204, 1748
PciI	ACATGT	2 cut(s)	1077, 3300
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	2 cut(s)	362, 3054
Pfl23II	CGTACG	1 cut(s)	180
PleI	GAGTC	2 cut(s)	491, 1922
PmaCI	CACGTG	1 cut(s)	2994
PmlI	CACGTG	1 cut(s)	2994
PpsI	GAGTC	2 cut(s)	491, 1922
Ppu21I	YACGTR	1 cut(s)	2994
PscI	ACATGT	2 cut(s)	1077, 3300
PshBI	ATTAAT	1 cut(s)	1701
PsiI	TTATAA	1 cut(s)	1673
Psp124BI	GAGCTC	1 cut(s)	3243
Psp6I	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
PspCI	CACGTG	1 cut(s)	2994
PspFI	CCCAGC	1 cut(s)	1616
PspGI	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	7 cut(s)	187, 523, 1509, 2671, 2956, 3065, 3796
PspPI	GGNCC	4 cut(s)	1223, 2195, 2669, 3794
PsrI	GAACNNNNNNTAC	2 cut(s)	164, 196
PstI	CTGCAG	1 cut(s)	1864
PstNI	CAGNNNCTG	1 cut(s)	3500
PsuI	RGATCY	6 cut(s)	225, 815, 1027, 1507, 3010, 3451
PvuII	CAGCTG	1 cut(s)	770
RseI	CAYNNNNRTG	2 cut(s)	2441, 3461
SacI	GAGCTC	1 cut(s)	3243
Sau96I	GGNCC	4 cut(s)	1223, 2195, 2669, 3794
SchI	GAGTC	2 cut(s)	491, 1922
ScrFI	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
SduI	GDGCHC	4 cut(s)	1566, 2573, 2741, 3243
SexAI	ACCWGGT	1 cut(s)	2452
SfaNI	GCATC	7 cut(s)	1309, 1670, 1776, 1855, 2798, 3061, 3635
SfcI	CTRYAG	4 cut(s)	1860, 2704, 2959, 3354
Sfr274I	CTCGAG	3 cut(s)	534, 3234, 3685
SinI	GGWCC	3 cut(s)	2195, 2669, 3794
SlaI	CTCGAG	3 cut(s)	534, 3234, 3685
SmiMI	CAYNNNNRTG	2 cut(s)	2441, 3461
SmlI	CTYRAG	5 cut(s)	343, 534, 1844, 3234, 3685
SmoI	CTYRAG	5 cut(s)	343, 534, 1844, 3234, 3685
SpeI	ACTAGT	1 cut(s)	3733
SphI	GCATGC	1 cut(s)	342
SseBI	AGGCCT	2 cut(s)	1204, 1748
SsiI	CCGC	4 cut(s)	13, 1047, 1183, 2240
SspI	AATATT	2 cut(s)	122, 1878
SstI	GAGCTC	1 cut(s)	3243
StuI	AGGCCT	2 cut(s)	1204, 1748
StyD4I	CCNGG	8 cut(s)	45, 104, 619, 921, 1225, 2452, 2584, 2964
StyI	CCWWGG	2 cut(s)	3059, 3106
TaaI	ACNGT	8 cut(s)	176, 185, 445, 754, 805, 942, 1132, 1494
TaiI	ACGT	4 cut(s)	154, 1820, 2153, 2996
TaqI	TCGA	8 cut(s)	535, 1961, 3032, 3069, 3235, 3273, 3686, 3803
TatI	WGTACW	3 cut(s)	266, 800, 3673
TseFI	GTSAC	7 cut(s)	206, 409, 1265, 1335, 1348, 1925, 3002
Tsp45I	GTSAC	7 cut(s)	206, 409, 1265, 1335, 1348, 1925, 3002
TspGWI	ACGGA	6 cut(s)	168, 307, 1367, 1413, 1819, 1996
Vha464I	CTTAAG	2 cut(s)	343, 1844
VneI	GTGCAC	1 cut(s)	2569
VpaK11BI	GGWCC	3 cut(s)	2195, 2669, 3794
VspI	ATTAAT	1 cut(s)	1701
XagI	CCTNNNNNAGG	1 cut(s)	2160
XapI	RAATTY	6 cut(s)	529, 545, 568, 1085, 1516, 2577
XbaI	TCTAGA	1 cut(s)	3248
XceI	RCATGY	5 cut(s)	342, 1081, 3304, 3399, 3563
XhoI	CTCGAG	3 cut(s)	534, 3234, 3685
XmiI	GTMKAC	2 cut(s)	598, 2116
XmnI	GAANNNNTTC	2 cut(s)	362, 3054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.