Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006478

Physical Location & Seq

Genomic Coordinates Reverse (-)

12211767 .. 12212934

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0154200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGAGAAGACCAACCAGGCCTATCCTTTGGCCCCTACAAATGGTTACACAAGAAGCGATGGAGAATCTTTGGTATCTGAAGACGAGCTCAAACGTCAAAAGAGAATGAAATTGTTTATGTACATTGGTATCTTCATTGTTTTTCAAATCATAGTCATGACCGTTTTTGGTCTTACTGTGATGAAAGTGAAGACCCCTAAGGTCAGATTGGGCGAAATCAATGTCCAAAGCCTCAACTCTGTCCCTGCAACACCTTCATTTGACACAAGCTTCACCACCCAGATTAGGGTGAAGAACACAAACTGGGGTCCTTATAAGTTTGATGCAAGCACCGCAACATTTGTTTACCAAGGCGTGGCAGTGGGACAGGTTTCTATTCCCAAAAGCAAGGCTGGAATGCGTTCCACAAAGAAGATCAGTGTTTCAGTGAGCTTGAATACCGATGAACTGCCAAGCAGTTCTACTCTTGGCAGTGAATTAAACAGCGGGATCTTGACGCTGACCAGCCAAGCCAAACTGACTGGAAAGGTAGAATTGATGCTCATAATGAAGAAGAAGAAGTCTGCCACAATGGACTGCACTATAGCTTTTGATTTGTCCACAAAGACTGTCAAAAGTTTACAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

211

Amino Acids

23.14

Weight (kDa)

9.79

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	96 - 195	1.1e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42470
fragaria_vesca	FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290
malus_domestica	MD06G1009400.v1.1
prunus_persica	Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1
pyrus_communis	pycom06g00780 pycom16g25890
rosa_chinensis	RchiOBHm_Chr7g0215501
rosa_laevigata	RLG00000002657
rosa_multiflora	Rmu_sc0005928.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244190
rosa_rugosa	Rorug07G0154100 Rorug07G0154200
rosa_samantha	Rh7AG290300 Rh7BG282300 Rh7CG310300 Rh7DG294100
rosa_wichuraiana	Rw7G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	2 cut(s)	336, 489
AclWI	GGATC	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	4 cut(s)	44, 288, 289, 358
AgsI	TTSAA	2 cut(s)	149, 439
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	91, 273, 435, 590
AluI	AGCT	4 cut(s)	91, 273, 435, 590
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	2 cut(s)	21, 33
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	34, 311
AsuHPI	GGTGA	2 cut(s)	268, 304
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	201
BaeI	ACNNNNGTAYC	2 cut(s)	115, 148
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	3 cut(s)	17, 90, 200
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	34, 311
BmiI	GGNNCC	2 cut(s)	36, 312
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	316, 531
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	3 cut(s)	17, 90, 200
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 288, 289, 358
Bse1I	ACTGG	2 cut(s)	311, 529
Bse21I	CCTNAGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	352
BseLI	CCNNNNNNNGG	4 cut(s)	44, 288, 289, 358
BseNI	ACTGG	2 cut(s)	311, 529
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	2 cut(s)	23, 35
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	230, 381
BslI	CCNNNNNNNGG	4 cut(s)	44, 288, 289, 358
BsmFI	GGGAC	2 cut(s)	230, 381
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	23, 35
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	417, 492
BspACI	CCGC	2 cut(s)	336, 489
BspANI	GGCC	2 cut(s)	23, 35
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	36, 312
BspPI	GGATC	1 cut(s)	500
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	311, 529
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	417, 492
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	166, 181, 613
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	6, 201
BstKTI	GATC	2 cut(s)	420, 495
BstMBI	GATC	2 cut(s)	417, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	585
BstV2I	GAAGAC	3 cut(s)	17, 90, 200
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
Bsu36I	CCTNAGG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	23, 35
BtgZI	GCGATG	1 cut(s)	75
BtsI	GCAGTG	2 cut(s)	369, 481
BtsIMutI	CAGTG	4 cut(s)	369, 427, 435, 481
Cac8I	GCNNGC	1 cut(s)	331
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	34, 311
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	160
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	6, 201
DpnI	GATC	2 cut(s)	419, 494
DpnII	GATC	2 cut(s)	417, 492
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	122, 155, 161, 318, 548, 587
FaqI	GGGAC	2 cut(s)	230, 381
FatI	CATG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	23, 35
HgaI	GACGC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	2 cut(s)	268, 304
Hpy166II	GTNNAC	3 cut(s)	349, 603, 623
Hpy188I	TCNGA	2 cut(s)	82, 209
Hpy188III	TCNNGA	2 cut(s)	160, 496
Hpy8I	GTNNAC	3 cut(s)	349, 603, 623
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	3 cut(s)	166, 181, 613
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	4 cut(s)	251, 329, 582, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	6, 201
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	417, 492
LpnPI	CCDG	9 cut(s)	5, 32, 261, 292, 296, 356, 381, 510, 520
LweI	GCATC	2 cut(s)	316, 531
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	419, 494
MboI	GATC	2 cut(s)	417, 492
MboII	GAAGA	9 cut(s)	22, 95, 127, 205, 307, 427, 565, 568, 571
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	113, 479, 536
MnlI	CCTC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	2 cut(s)	417, 492
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	36, 312
PagI	TCATGA	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	23
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	311
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	36, 312
PspPI	GGNCC	2 cut(s)	34, 311
PspPPI	RGGWCCY	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	492
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	482
Sau3AI	GATC	2 cut(s)	417, 492
Sau96I	GGNCC	2 cut(s)	34, 311
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	9 cut(s)	93, 100, 207, 259, 275, 375, 437, 534, 592
SfaNI	GCATC	2 cut(s)	316, 531
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	113, 479, 536
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	336, 489
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	166, 181, 613
TaiI	ACGT	1 cut(s)	100
TasI	AATT	3 cut(s)	113, 479, 536
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	4 cut(s)	369, 427, 435, 481
TspDTI	ATGAA	6 cut(s)	125, 127, 200, 249, 462, 566
TspRI	CASTG	4 cut(s)	369, 427, 435, 481
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.