Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006478

Physical Location & Seq

Genomic Coordinates Reverse (-)

31423606 .. 31439118

Gene Structure 15513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3300 bp

ATGGCGCTTCTCCGCCTACGGCTTGCCGTATTCCTCTCTCTCTTCCAGGTGTTATGGATTCTGCCTCTGGCATTTGCTCAGAGTTCTATAAAGTCCAGTGTTACCAGGCATTCTGAAGAATATTGTGCTATGTATGACATTTGTGGTAAACGTACTGATGGAAAAGTATTGAACTGTCCGTACGGTTCCCCATCTGTAAAGCCAAGTGACTTACTTTCATCTAAGATCCAAAGTTTGTGTCCAACAATTACTGGAAATGTCTGTTGTACAGCAGCCCAATTTGACACATTACGGACATCGGTTCAGCCAGCAATTCCCTTTCTTGTAGGATGTCCAGCATGCTTAAGAAACTTTTTGAACCTCTTCTGTGAGCTTACCTGCTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCTGTAAACAAGGTAAATAACAATATGACCGTTGGAGGGATTGATTATTACATAAGTGATACTTTTGGTGAGGGGTTGTATGACTCCTGCAAGGATGTCAAGTTTGGTACCATGAATTCTAGAGCTATGGAATTCATTGGTGCTGGTGCTCAAAATTTTAAAGAGTGGTTTACTTTTATCGGTAGACAAGCAGCTCCTACTCTGCCAGGTTCACCATATGCCATTAGATTCCGGTCAAATGCTACTGACTCATCCGAGATGATACCTATGAATGTATCTACTTATTCTTGTGGTGATAATTCACTGGGCTGTTCCTGTGGTGATTGCCCGTCATCCACAGTTTGTTCTAACACAGCTGTTCCAGTTTCCCCCAAAAAAGGGTCATGTACAGTGAAAATTGGATCTATTAAGGCAAAATGTATTGACCTTGCTGTCGCCGTTCTATATATCGTACTGGTTTCTGTGTTTTTTGGGTGGGGTTTGTTTAATCGGACTAGGAAGCAAACCCCGGCTTCTAGGAAAAAACCGTTGTGGAATAATGTAATGGATGATGGCGAAGTTCAGTCTATAAGCAGGGAGAAGATCGAGAATCCTCCAATGCAGGTTCTTGAAGATCCTCCCCACAGGAGAAGCGGTGTCCAACTTTCAATTGTGCAAGGATACATGTCAAAATTTTATAGGGGATATGGGAAGTGGGTTGCTAGAAATCCGATCACAGTGTTGGGTTCATCGTCTGCTATAGTTCTCCTACTTTGCCTTGGTCTTATCCGGTTCAAGGTGGAAACAAGGCCTGAGAAGCTATGGGTAGGGCCAGGGAGTAAAGCAGCACAGGAGAAGCAATTTTTTGATAGTCACCTAGCCCCTTTTTACAGAATTGAGCAGCTTATATTAGCAACAATACCAGATGCCAAGCATGGTAAGTCACCTAGTATTGTGACGGAGGACAACATCAAGTTACTTTTTGAGATACAAAAAAAGGTTGACGGAATTAAAGCAAATTATTCTGGGTCAATGATATCTCTTGCTGATATCTGCATGAAGCCACTAGACCAAGATTGCGCCAGTCAAAGTGTCATACAGTATTTCAAATTGGATCCTGAAAATTTTGACAATTATGGTGGGATTGAACACCTAACGTATTGTTTTGAGCACTATTCCTCTGCTGACAAATGTATGAGTGCATATAAAGCTCCTCTTGATCCCAGCACTGCTTTAGGTGGTTTCTCTGGGAAAAACTATTCCGAGGCATCAGCATTTATAATAACTTATCCTGTAAACAATGCTATTAATAAAGAGGGGAATGAAACTGAAAGAGCAGTGGCATGGGAGAAGGCCTTTATTCAGTTGGCAAAGGCTGAGCTGTTGCAAATGGTGCAATCTAAAAACTTAACACTATCTTTCTCATCGGAGAGTTCCGTTGAAGAAGAACTTAAGAGAGAAAGCACTGCAGATGCTATTACAATATTGATAAGCTATCTTGTGATGTTCGCTTATATTTCTCTTACTTTGGGTGACTCTCCTCGTTTGTCTTCCTTTTACATTTCATCAAAGGTATTGCTAGGTCTCTCTGGAGTTGTTCTTGTCATGCTCTCCGTTCTTGGATCAGTGGGATTTTTCAGTGCCATTGGAGTTAAATCTACCCTAATTATTATGGAAGTCATCCCATTTCTTGTTCTAGCTGTCGGGGTAGATAATATGTGTATACTGGTTCATGCTGTCAAACGGCAACCATTGACGATGCCTTTAGAAGGGCGAATAAGCAATGCACTTGTGGAAGTTGGACCATCCATAACTCTTGCTAGTCTTTCAGAAGTTTTAGCATTTGCGGTTGGCAGCTTTATTCCTATGCCAGCTTGTCGTGTGTTCTCCATGTTTGCTGCACTAGCTGTTCTTTTGGACTTCCTCCTTCAAGTTACTGCTTTTGTAGCTCTGATTGTTCTTGATTTTCGCCGAACTGAGGATAATAGGGTTGATTGTTTCCCTTGTATGAAAGTTTCATCATATACCAACTCTGATAAAGGCATTGAAGTAAGAAAACCAGGTTTGCTGGCACGCTATATGAAGGGAATCCATGCTCCCATTCTAAGTGTTTGGGTTGTTAAGATAGTTGTCATTTCCATTTTTGTTGCGTTTTCACTGGCTAGCATTGCGTTGTGCACCAGAATTCAGCCTGGTTTGGAACAAAAAATTGTTCTTCCCCAAGATTCCTATCTTCAGGGTTATTTCAATAATATATCAGAGTATCTCCGAATTGGACCCCCACTATATTTTGTTGTGAAGAACTACAACTATAGTTCAGAATCAAGACATACAAACCAATTGTGCTCCATTAGCCAATGTGATTCAGATTCTCTTTTGAATGAGATTGCAAGAGCATCCTTAATTCCAGAATCAAGTTACATTGCTAAGCCTGCTGCTTCATGGCTTGATGATTTTCTTGTGTGGATTTCCCCAGAAGCTTTTGGGTGCTGTCGGAAGTTTACAAATGCAACTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTTTTCCTCTGATGGTTCCTGTAGCCTGGGTGGAGTGTGCAAAGATTGTACCACGTGTTTTCGTCACTCAGATCTGCATAATGGTCGTCCATCGACCACACAATTTGAAGAAAAACTTCCATGGTTCCTCGATGCTCTGCCCTCTTCAGATTGTGCTAAAGGTGGCCATGGAGCTTACACTAGCAGTGTGGAATTGAAAGGCTATGAAAGTGGCATTATTCAAGCGTCATCATTTCGTACATATCATACACCTCTCAACAAACAGATTGACTATGTAAACTCAATGAGGGCTGCTCGAGAGCTCTGTTCTAGAGTTTCTGATTCTTTGAAGGTAAGATTTCAAAACTCCTTGCTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

1099

Amino Acids

120.79

Weight (kDa)

8.04

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPC1_N	PF16414	40 - 269	1.6e-66	Niemann-Pick C1 N terminus
NPC1_MLD	PF22314	417 - 608	1.7e-38	NPC1, middle luminal domain
Patched	PF02460	631 - 784	1.2e-31	Patched SSD
Sterol-sensing	PF12349	652 - 802	7.8e-49	Sterol-sensing domain of SREBP cleavage-activation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42470
fragaria_vesca	FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290
malus_domestica	MD06G1009400.v1.1
prunus_persica	Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1
pyrus_communis	pycom06g00780 pycom16g25890
rosa_chinensis	RchiOBHm_Chr7g0215501
rosa_laevigata	RLG00000002657
rosa_multiflora	Rmu_sc0005928.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244190
rosa_rugosa	Rorug07G0154100 Rorug07G0154200
rosa_samantha	Rh7AG290300 Rh7BG282300 Rh7CG310300 Rh7DG294100
rosa_wichuraiana	Rw7G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1673
AasI	GACNNNNNNGTC	1 cut(s)	845
Acc36I	ACCTGC	2 cut(s)	386, 1006
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	598, 2116
AciI	CCGC	3 cut(s)	13, 1047, 2240
AclWI	GGATC	7 cut(s)	220, 823, 1022, 1502, 1515, 1607, 2023
AcoI	YGGCCR	1 cut(s)	3103
AcsI	RAATTY	6 cut(s)	529, 545, 568, 1085, 1516, 2577
AcuI	CTGAAG	3 cut(s)	135, 2612, 3069
AcvI	CACGTG	1 cut(s)	2994
AfaI	GTAC	8 cut(s)	154, 182, 268, 523, 802, 867, 2989, 3178
AfiI	CCNNNNNNNGG	6 cut(s)	450, 791, 792, 1189, 2162, 2371
AflII	CTTAAG	2 cut(s)	343, 1844
AflIII	ACRYGT	2 cut(s)	1077, 2993
AjnI	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
Alw21I	GWGCWC	5 cut(s)	565, 1566, 2573, 2741, 3243
Alw26I	GTCTC	1 cut(s)	1982
Alw44I	GTGCAC	1 cut(s)	2569
AlwI	GGATC	7 cut(s)	220, 823, 1022, 1502, 1515, 1607, 2023
Ama87I	CYCGRG	1 cut(s)	3234
AoxI	GGCC	4 cut(s)	1202, 1223, 1746, 3103
ApaLI	GTGCAC	1 cut(s)	2569
ApeKI	GCWGC	8 cut(s)	272, 605, 1238, 1294, 2247, 2291, 2828, 3230
ApoI	RAATTY	6 cut(s)	529, 545, 568, 1085, 1516, 2577
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AseI	ATTAAT	1 cut(s)	1701
Asp700I	GAANNNNTTC	2 cut(s)	362, 3054
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	7, 1475
AspS9I	GGNCC	3 cut(s)	1223, 2195, 2669
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	7 cut(s)	494, 618, 719, 746, 1259, 1329, 1937
AsuNHI	GCTAGC	1 cut(s)	2555
AvaI	CYCGRG	1 cut(s)	3234
AvaII	GGWCC	2 cut(s)	2195, 2669
BaeGI	GKGCMC	1 cut(s)	2573
BalI	TGGCCA	1 cut(s)	3105
BamHI	GGATCC	1 cut(s)	1507
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	3243
BbrPI	CACGTG	1 cut(s)	2994
BbsI	GAAGAC	1 cut(s)	1935
Bbv12I	GWGCWC	5 cut(s)	565, 1566, 2573, 2741, 3243
BbvI	GCAGC	8 cut(s)	284, 617, 1250, 1306, 2259, 2278, 2815, 3217
BccI	CCATC	6 cut(s)	152, 199, 959, 2206, 2945, 3037
BceAI	ACGGC	4 cut(s)	11, 35, 836, 2153
BcgI	CGANNNNNNTGC	2 cut(s)	3005, 3039
BciT130I	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
BciVI	GTATCC	1 cut(s)	1067
BclI	TGATCA	1 cut(s)	2923
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	1 cut(s)	1982
BfmI	CTRYAG	4 cut(s)	1152, 1860, 2704, 2959
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	2 cut(s)	343, 1844
BfuAI	ACCTGC	2 cut(s)	386, 1006
BfuI	GTATCC	1 cut(s)	1067
BglII	AGATCT	1 cut(s)	3010
BisI	GCNGC	8 cut(s)	273, 606, 1239, 1295, 2248, 2292, 2829, 3231
BlpI	GCTNAGC	2 cut(s)	1770, 2820
BlsI	GCNGC	8 cut(s)	274, 607, 1240, 1296, 2249, 2293, 2830, 3232
Bme1390I	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
Bme18I	GGWCC	2 cut(s)	2195, 2669
BmeT110I	CYCGRG	1 cut(s)	3234
BmgT120I	GGNCC	3 cut(s)	1223, 2195, 2669
BmiI	GGNNCC	6 cut(s)	187, 523, 1509, 2671, 2956, 3065
BmrFI	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	6 cut(s)	1309, 1670, 1855, 2142, 2798, 3061
BmtI	GCTAGC	1 cut(s)	2559
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	1935
BplI	GAGNNNNNCTC	2 cut(s)	3217, 3249
BpmI	CTGGAG	1 cut(s)	2004
Bpu1102I	GCTNAGC	2 cut(s)	1770, 2820
BpuMI	CCSGG	1 cut(s)	923
BsaAI	YACGTR	1 cut(s)	2994
BsaBI	GATNNNNATC	1 cut(s)	2622
BsaI	GGTCTC	1 cut(s)	1982
BsaJI	CCNNGG	7 cut(s)	921, 1171, 1226, 1656, 2965, 3059, 3106
BsaWI	WCCGGW	2 cut(s)	645, 1182
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 1033, 1063
Bsc4I	CCNNNNNNNGG	6 cut(s)	450, 791, 792, 1189, 2162, 2371
Bse1I	ACTGG	8 cut(s)	96, 256, 723, 776, 873, 1476, 2124, 2556
Bse3DI	GCAATG	3 cut(s)	2182, 2559, 2814
Bse8I	GATNNNNATC	1 cut(s)	2622
BseBI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
BseDI	CCNNGG	7 cut(s)	921, 1171, 1226, 1656, 2965, 3059, 3106
BseGI	GGATG	8 cut(s)	335, 514, 665, 746, 967, 2073, 2198, 2789
BseJI	GATNNNNATC	1 cut(s)	2622
BseLI	CCNNNNNNNGG	6 cut(s)	450, 791, 792, 1189, 2162, 2371
BseMI	GCAATG	3 cut(s)	2182, 2559, 2814
BseMII	CTCAG	5 cut(s)	92, 1197, 1761, 2361, 3021
BseNI	ACTGG	8 cut(s)	96, 256, 723, 776, 873, 1476, 2124, 2556
BseRI	GAGGAG	2 cut(s)	1596, 1923
BseSI	GKGCMC	1 cut(s)	2573
BseXI	GCAGC	8 cut(s)	284, 617, 1250, 1306, 2259, 2278, 2815, 3217
BseYI	CCCAGC	1 cut(s)	1616
BsgI	GTGCAG	1 cut(s)	2277
BshFI	GGCC	4 cut(s)	1204, 1225, 1748, 3105
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	5 cut(s)	565, 1566, 2573, 2741, 3243
BsiHKCI	CYCGRG	1 cut(s)	3234
BsiSI	CCGG	3 cut(s)	646, 923, 1183
BsiWI	CGTACG	1 cut(s)	180
BslI	CCNNNNNNNGG	6 cut(s)	450, 791, 792, 1189, 2162, 2371
BsmAI	GTCTC	1 cut(s)	1982
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	1204, 1225, 1748, 3105
Bso31I	GGTCTC	1 cut(s)	1982
BsoBI	CYCGRG	1 cut(s)	3234
Bsp1286I	GDGCHC	5 cut(s)	565, 1566, 2573, 2741, 3243
Bsp1407I	TGTACA	2 cut(s)	266, 800
Bsp1720I	GCTNAGC	2 cut(s)	1770, 2820
Bsp19I	CCATGG	2 cut(s)	3059, 3106
BspACI	CCGC	3 cut(s)	13, 1047, 2240
BspANI	GGCC	4 cut(s)	1204, 1225, 1748, 3105
BspCNI	CTCAG	5 cut(s)	91, 1198, 1762, 2362, 3020
BspLI	GGNNCC	6 cut(s)	187, 523, 1509, 2671, 2956, 3065
BspMAI	CTGCAG	1 cut(s)	1864
BspMI	ACCTGC	2 cut(s)	386, 1006
BspOI	GCTAGC	1 cut(s)	2559
BspPI	GGATC	7 cut(s)	220, 823, 1022, 1502, 1515, 1607, 2023
BspT107I	GGYRCC	1 cut(s)	521
BspTI	CTTAAG	2 cut(s)	343, 1844
BspTNI	GGTCTC	1 cut(s)	1982
BsrDI	GCAATG	3 cut(s)	2182, 2559, 2814
BsrGI	TGTACA	2 cut(s)	266, 800
BsrI	ACTGG	8 cut(s)	96, 256, 723, 776, 873, 1476, 2124, 2556
BssECI	CCNNGG	7 cut(s)	921, 1171, 1226, 1656, 2965, 3059, 3106
BssNAI	GTATAC	1 cut(s)	2117
BssT1I	CCWWGG	3 cut(s)	1171, 3059, 3106
Bst1107I	GTATAC	1 cut(s)	2117
Bst2UI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
Bst4CI	ACNGT	8 cut(s)	176, 185, 445, 754, 805, 942, 1132, 1494
Bst6I	CTCTTC	3 cut(s)	47, 368, 3088
BstAFI	CTTAAG	2 cut(s)	343, 1844
BstAPI	GCANNNNNTGC	1 cut(s)	1786
BstAUI	TGTACA	2 cut(s)	266, 800
BstBAI	YACGTR	1 cut(s)	2994
BstC8I	GCNNGC	8 cut(s)	24, 309, 340, 2265, 2463, 2467, 2557, 2826
BstDEI	CTNAG	8 cut(s)	78, 222, 1206, 1770, 2370, 2498, 2820, 3007
BstDSI	CCRYGG	2 cut(s)	3059, 3106
BstENI	CCTNNNNNAGG	1 cut(s)	2160
BstF5I	GGATG	8 cut(s)	335, 514, 665, 746, 967, 2073, 2198, 2789
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 1475
BstMAI	GTCTC	1 cut(s)	1982
BstMWI	GCNNNNNNNGC	8 cut(s)	1210, 1601, 1786, 2297, 2339, 2561, 2745, 2825
BstNI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
BstNSI	RCATGY	2 cut(s)	342, 1081
BstSCI	CCNGG	8 cut(s)	45, 104, 619, 921, 1225, 2452, 2584, 2964
BstSFI	CTRYAG	4 cut(s)	1152, 1860, 2704, 2959
BstSLI	GKGCMC	1 cut(s)	2573
BstV1I	GCAGC	8 cut(s)	284, 617, 1250, 1306, 2259, 2278, 2815, 3217
BstV2I	GAAGAC	1 cut(s)	1935
BstX2I	RGATCY	5 cut(s)	225, 815, 1027, 1507, 3010
BstYI	RGATCY	5 cut(s)	225, 815, 1027, 1507, 3010
BstZ17I	GTATAC	1 cut(s)	2117
BsuI	GTATCC	1 cut(s)	1067
BsuRI	GGCC	4 cut(s)	1204, 1225, 1748, 3105
BtgI	CCRYGG	2 cut(s)	3059, 3106
BtsCI	GGATG	8 cut(s)	335, 514, 665, 746, 967, 2073, 2198, 2789
BtsI	GCAGTG	4 cut(s)	1620, 1737, 1857, 3130
BveI	ACCTGC	2 cut(s)	386, 1006
Cac8I	GCNNGC	8 cut(s)	24, 309, 340, 2265, 2463, 2467, 2557, 2826
CfoI	GCGC	2 cut(s)	7, 1475
Cfr13I	GGNCC	3 cut(s)	1223, 2195, 2669
CseI	GACGC	1 cut(s)	3153
CsiI	ACCWGGT	1 cut(s)	2452
Csp6I	GTAC	8 cut(s)	153, 181, 267, 522, 801, 866, 2988, 3177
CspCI	CAANNNNNGTGG	4 cut(s)	1513, 1548, 3025, 3060
CviQI	GTAC	8 cut(s)	153, 181, 267, 522, 801, 866, 2988, 3177
DdeI	CTNAG	8 cut(s)	78, 222, 1206, 1770, 2370, 2498, 2820, 3007
DraI	TTTAAA	1 cut(s)	574
DrdI	GACNNNNNNGTC	1 cut(s)	845
DseDI	GACNNNNNNGTC	1 cut(s)	845
EaeI	YGGCCR	1 cut(s)	3103
Eam1104I	CTCTTC	3 cut(s)	47, 368, 3088
EarI	CTCTTC	3 cut(s)	47, 368, 3088
Ecl136II	GAGCTC	1 cut(s)	3241
Eco130I	CCWWGG	3 cut(s)	1171, 3059, 3106
Eco147I	AGGCCT	2 cut(s)	1204, 1748
Eco24I	GRGCYC	1 cut(s)	3243
Eco31I	GGTCTC	1 cut(s)	1982
Eco32I	GATATC	2 cut(s)	1431, 1444
Eco47I	GGWCC	2 cut(s)	2195, 2669
Eco53kI	GAGCTC	1 cut(s)	3241
Eco57I	CTGAAG	3 cut(s)	135, 2612, 3069
Eco72I	CACGTG	1 cut(s)	2994
Eco88I	CYCGRG	1 cut(s)	3234
EcoICRI	GAGCTC	1 cut(s)	3241
EcoNI	CCTNNNNNAGG	1 cut(s)	2160
EcoRI	GAATTC	3 cut(s)	529, 545, 2577
EcoRII	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
EcoRV	GATATC	2 cut(s)	1431, 1444
EcoT14I	CCWWGG	3 cut(s)	1171, 3059, 3106
EcoT38I	GRGCYC	1 cut(s)	3243
ErhI	CCWWGG	3 cut(s)	1171, 3059, 3106
FalI	AAGNNNNNCTT	8 cut(s)	460, 492, 1593, 1625, 1827, 1859, 3039, 3071
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	2923
FblI	GTMKAC	2 cut(s)	598, 2116
Fnu4HI	GCNGC	8 cut(s)	273, 606, 1239, 1295, 2248, 2292, 2829, 3231
FokI	GGATG	8 cut(s)	342, 521, 652, 733, 974, 2060, 2185, 2776
FriOI	GRGCYC	1 cut(s)	3243
Fsp4HI	GCNGC	8 cut(s)	273, 606, 1239, 1295, 2248, 2292, 2829, 3231
GlaI	GCGC	2 cut(s)	6, 1474
GluI	GCNGC	8 cut(s)	273, 606, 1239, 1295, 2248, 2292, 2829, 3231
GsaI	CCCAGC	1 cut(s)	1620
GsuI	CTGGAG	1 cut(s)	2004
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	1204, 1225, 1748, 3105
HapII	CCGG	3 cut(s)	646, 923, 1183
HgaI	GACGC	1 cut(s)	3153
HhaI	GCGC	2 cut(s)	7, 1475
Hin6I	GCGC	2 cut(s)	5, 1473
HinP1I	GCGC	2 cut(s)	5, 1473
HincII	GTYRAC	1 cut(s)	1396
HindII	GTYRAC	1 cut(s)	1396
HindIII	AAGCTT	1 cut(s)	2871
HpaII	CCGG	3 cut(s)	646, 923, 1183
HphI	GGTGA	7 cut(s)	494, 618, 719, 746, 1259, 1329, 1937
HpyAV	CCTTC	5 cut(s)	1738, 2156, 2330, 2470, 3262
HpyCH4III	ACNGT	8 cut(s)	176, 185, 445, 754, 805, 942, 1132, 1494
HpyCH4IV	ACGT	3 cut(s)	151, 1550, 2993
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1210, 1601, 1786, 2297, 2339, 2561, 2745, 2825
HpyF3I	CTNAG	8 cut(s)	78, 222, 1206, 1770, 2370, 2498, 2820, 3007
HpySE526I	ACGT	3 cut(s)	151, 1550, 2993
HspAI	GCGC	2 cut(s)	5, 1473
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	2923
LmnI	GCTCC	5 cut(s)	613, 1609, 2494, 2744, 3110
Lsp1109I	GCAGC	8 cut(s)	284, 617, 1250, 1306, 2259, 2278, 2815, 3217
LweI	GCATC	6 cut(s)	1309, 1670, 1855, 2142, 2798, 3061
MabI	ACCWGGT	1 cut(s)	2452
MaeII	ACGT	3 cut(s)	151, 1550, 2993
MfeI	CAATTG	2 cut(s)	1062, 2732
MflI	RGATCY	5 cut(s)	225, 815, 1027, 1507, 3010
MhlI	GDGCHC	5 cut(s)	565, 1566, 2573, 2741, 3243
MlsI	TGGCCA	1 cut(s)	3105
MluNI	TGGCCA	1 cut(s)	3105
MlyI	GAGTC	3 cut(s)	491, 656, 1922
MmeI	TCCRAC	5 cut(s)	266, 427, 1078, 2173, 2867
Mox20I	TGGCCA	1 cut(s)	3105
MroXI	GAANNNNTTC	2 cut(s)	362, 3054
MscI	TGGCCA	1 cut(s)	3105
Msp20I	TGGCCA	1 cut(s)	3105
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	2 cut(s)	343, 1844
MspI	CCGG	3 cut(s)	646, 923, 1183
MspR9I	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
MunI	CAATTG	2 cut(s)	1062, 2732
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	7 cut(s)	47, 106, 621, 1227, 2454, 2586, 2966
MwoI	GCNNNNNNNGC	8 cut(s)	1210, 1601, 1786, 2297, 2339, 2561, 2745, 2825
NciI	CCSGG	1 cut(s)	923
NcoI	CCATGG	2 cut(s)	3059, 3106
NdeI	CATATG	1 cut(s)	631
NheI	GCTAGC	1 cut(s)	2555
NlaIV	GGNNCC	6 cut(s)	187, 523, 1509, 2671, 2956, 3065
NmuCI	GTSAC	7 cut(s)	206, 409, 1265, 1335, 1348, 1925, 3002
NspI	RCATGY	2 cut(s)	342, 1081
PaeI	GCATGC	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	3234
PceI	AGGCCT	2 cut(s)	1204, 1748
PciI	ACATGT	1 cut(s)	1077
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	2 cut(s)	362, 3054
Pfl23II	CGTACG	1 cut(s)	180
PkrI	GCNGC	8 cut(s)	274, 607, 1240, 1296, 2249, 2293, 2830, 3232
PleI	GAGTC	3 cut(s)	491, 656, 1922
PmaCI	CACGTG	1 cut(s)	2994
PmlI	CACGTG	1 cut(s)	2994
PpsI	GAGTC	3 cut(s)	491, 656, 1922
Ppu21I	YACGTR	1 cut(s)	2994
PscI	ACATGT	1 cut(s)	1077
PshBI	ATTAAT	1 cut(s)	1701
PsiI	TTATAA	1 cut(s)	1673
Psp124BI	GAGCTC	1 cut(s)	3243
Psp6I	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
PspCI	CACGTG	1 cut(s)	2994
PspFI	CCCAGC	1 cut(s)	1616
PspGI	CCWGG	7 cut(s)	45, 104, 619, 1225, 2452, 2584, 2964
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	6 cut(s)	187, 523, 1509, 2671, 2956, 3065
PspPI	GGNCC	3 cut(s)	1223, 2195, 2669
PsrI	GAACNNNNNNTAC	2 cut(s)	164, 196
PstI	CTGCAG	1 cut(s)	1864
PsuI	RGATCY	5 cut(s)	225, 815, 1027, 1507, 3010
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	8 cut(s)	154, 182, 268, 523, 802, 867, 2989, 3178
RsaNI	GTAC	8 cut(s)	153, 181, 267, 522, 801, 866, 2988, 3177
SacI	GAGCTC	1 cut(s)	3243
SatI	GCNGC	8 cut(s)	273, 606, 1239, 1295, 2248, 2292, 2829, 3231
Sau96I	GGNCC	3 cut(s)	1223, 2195, 2669
SchI	GAGTC	3 cut(s)	491, 656, 1922
ScrFI	CCNGG	8 cut(s)	47, 106, 621, 923, 1227, 2454, 2586, 2966
SduI	GDGCHC	5 cut(s)	565, 1566, 2573, 2741, 3243
SexAI	ACCWGGT	1 cut(s)	2452
SfaNI	GCATC	6 cut(s)	1309, 1670, 1855, 2142, 2798, 3061
SfcI	CTRYAG	4 cut(s)	1152, 1860, 2704, 2959
Sfr274I	CTCGAG	1 cut(s)	3234
SinI	GGWCC	2 cut(s)	2195, 2669
SlaI	CTCGAG	1 cut(s)	3234
SmlI	CTYRAG	3 cut(s)	343, 1844, 3234
SmoI	CTYRAG	3 cut(s)	343, 1844, 3234
SphI	GCATGC	1 cut(s)	342
SseBI	AGGCCT	2 cut(s)	1204, 1748
SsiI	CCGC	3 cut(s)	13, 1047, 2240
SspI	AATATT	2 cut(s)	122, 1878
SstI	GAGCTC	1 cut(s)	3243
StuI	AGGCCT	2 cut(s)	1204, 1748
StyD4I	CCNGG	8 cut(s)	45, 104, 619, 921, 1225, 2452, 2584, 2964
StyI	CCWWGG	3 cut(s)	1171, 3059, 3106
TaaI	ACNGT	8 cut(s)	176, 185, 445, 754, 805, 942, 1132, 1494
TaiI	ACGT	3 cut(s)	154, 1553, 2996
TaqI	TCGA	4 cut(s)	999, 3032, 3069, 3235
TatI	WGTACW	2 cut(s)	266, 800
TseFI	GTSAC	7 cut(s)	206, 409, 1265, 1335, 1348, 1925, 3002
TseI	GCWGC	8 cut(s)	272, 605, 1238, 1294, 2247, 2291, 2828, 3230
Tsp45I	GTSAC	7 cut(s)	206, 409, 1265, 1335, 1348, 1925, 3002
TspGWI	ACGGA	6 cut(s)	168, 307, 1367, 1413, 1819, 1996
Vha464I	CTTAAG	2 cut(s)	343, 1844
VneI	GTGCAC	1 cut(s)	2569
VpaK11BI	GGWCC	2 cut(s)	2195, 2669
VspI	ATTAAT	1 cut(s)	1701
XagI	CCTNNNNNAGG	1 cut(s)	2160
XapI	RAATTY	6 cut(s)	529, 545, 568, 1085, 1516, 2577
XbaI	TCTAGA	2 cut(s)	533, 3248
XceI	RCATGY	2 cut(s)	342, 1081
XhoI	CTCGAG	1 cut(s)	3234
XmiI	GTMKAC	2 cut(s)	598, 2116
XmnI	GAANNNNTTC	2 cut(s)	362, 3054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.