Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006478

Physical Location & Seq

Genomic Coordinates Forward (+)

36689490 .. 36704458

Gene Structure 14969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGAGTGCATATAAAGCTCCTCTTGATCCCAGCACTGCTTTAGGTGGTTTCTCTGGGAAAAACTATTCCGAGGCATCAGCATTTATAATAACTTATCCTGTAAACAATGCTATTAATAAAGAGGGGAATGAAACTGAAAGAGCAGTGGCATGGGAGAAGGCCTTTATTGAGTTGGCAAAGGCTGAGCTGTTGCAAATGGTGCAATCTAAAAACTTAACACTATCTTTCTCATCGGAGAGTTCCGTTGAAGAAGAACTTAAGAGAGAAAGCACTGCAGATGCTATTACAATATTGATAAGCTATCTTGTGATGTTCGCTTATATTTCTCTTACTTTGGGTGACTCTCCTCGTTTGTCTTCCTTCTACATTTCATCGAAGGTATTGCTAGGTCTCTCTGGAGTTGTTCTTGTCATGCTCTCCGTTCTTGGATCAGTGGGATTTTTCAGTGCCATTGGAGTTAAATCTACCCTAATTATTATGGAAGTCATCCCATTTCTTGTTCTAGCTGTTGGGGTAGATAATATGTGTATACTGGTTCATGCTGTCAAACGGCAACCATTGACGTTGCCTTTAGAAGGGCGAATAAGCAATGCACTTGTGGAAGTTGGACCATCCATAACTCTTGCTAGTCTATCAGAAGTTTTAGCATTTGCGGTTGGCAGCTTTATTCCTATGCCAGCTTGTCGTGTGTTCTCCATGTTTGCTGCACTAGCTGTTCTTTTGGACTTCCTCCTTCAAGTTACTGCTTTTGTAGCTCTGATTGTTCTTGATTTTCGCCGAACTGAGGATAATAGGGTTGATTGTTTCCCATGTATGAAAGTTTCATCATATACCAACTCTGATAAAGGCATTGAAGAAAGAAAACCCGGTTTGCTGGCTCGCTATATGAAGGAAATCCATGCTCCCATTCTAAGTGTTTGGGTTGTTAAGATAGTTGTCATTTCCATTTTTGTTGCGTTTTCACTGGCTAGCATTGCGTTGTGCACCAGAATTCAGCCTGGTTTGGAACAAAAAATTGTTCTTCCCCAAGATTCCTATCTTCAGGGTTATTTCAATAATATATCAGAGTATCTCCGAATTGGACCCCCACTATATTTTGTTGTGAAGAACTACAACTATAGTTCAGAATCAAGACATACAAACCAATTGTGCTCCATTAGCCAATGCGATTCAGATTCTCTTTTGAATGAGATTGCAAGGGCATCCTTAATTCCAGAATCAAGTTACATTGCTAAGCCTGCTGCTTCATGGCTTGATGATTTTCTTGTGTGGATTTCCCCAGAAGCTTTTGGGTGCTGTCGGAAGTTTACAAATGCAACTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTCTTCCTCTGATGGTTCCTGTAGCCTGGGTGGAGTGTGCAAAGATTGTACCACGTGTTTTCGTCACTCGGATCTGCATAATGGTCGTCCATCGACCACACAATTTGAAGAAAAACTTCCATGGTTCCTCGATGCTCTGCCCTCTTCAGATTGTGCTAAAGGTGGCCATGGAGCTTACACTAGCAGTGTGGAATTGAAAGGCTATGAAAGTGGGATTATTCAAGCGTCATCATTTCGTACATATCATACACCTCTCAACAAACAGATTGACTATGTAAACTCAATGAGGGCTGCTCGAGAGCTCTGTTCTAGAGTTTCTGATTCTTTGAAGATCGAGATATTCCCATATTCAGTGTTTTACATGTTCTTTGAGCAGTACCTTGATATTTGGAAAACAGCACTTATGAGCCTTTCTATAGCTATTGGTGCTGTATTTATCGTTTGCCTAGTCATCACATGCAGCTTTTGGAGTTCAGCAATTATCCTATTGGTGTTGGCAATGATTGTTGTAGATCTCATGGGCGTGATGGCAATTCTTCACATTCAATTAAATGCAGTCTCTGTTGTTAACCTTGTTATGGCAGTGGGCATTTCTGTTGAGTTTTGTGTGCATATGACACATGCTTTCTCGGTTAGCACAGGAGATAGAGATCAACGAACAAAGGAGGCTCTGGGTACAATGGGTGCATCTGTCTTCAGTGGAATCACACTTACGAAGTTAGTTGGGGTTATTGTACTTTGTTTCTCGAGAACAGAAGTCTTTGTGGTGTATTACTTTCAAATGTATCTAGCACTAGTTCTTCTTGGTTTCTTACATGGGCTTGTATTTTTGCCGGTGGTGTTGAGCATTTTTGGTCCCCCTTCGAGGTGTCTGCTCAGGGAGCAGCAACAAGATCGGCCATCTGTACCATCACAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

757

Amino Acids

83.16

Weight (kDa)

5.77

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPC1_MLD	PF22314	1 - 79	1.2e-14	NPC1, middle luminal domain
Patched	PF02460	102 - 255	5e-32	Patched SSD
Sterol-sensing	PF12349	123 - 273	2.7e-49	Sterol-sensing domain of SREBP cleavage-activation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42470
fragaria_vesca	FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290 FvH4_5g25290
malus_domestica	MD06G1009400.v1.1
prunus_persica	Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1 Prupe.5G011100_v2.0.a1
pyrus_communis	pycom06g00780 pycom16g25890
rosa_chinensis	RchiOBHm_Chr7g0215501
rosa_laevigata	RLG00000002657
rosa_multiflora	Rmu_sc0005928.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244190
rosa_rugosa	Rorug07G0154100 Rorug07G0154200
rosa_samantha	Rh7AG290300 Rh7BG282300 Rh7CG310300 Rh7DG294100
rosa_wichuraiana	Rw7G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	3 cut(s)	20, 436, 1431
AcoI	YGGCCR	2 cut(s)	1516, 2249
AcsI	RAATTY	1 cut(s)	990
AcuI	CTGAAG	3 cut(s)	1025, 1482, 2032
AcvI	CACGTG	1 cut(s)	1407
AfaI	GTAC	6 cut(s)	1402, 1591, 1730, 2029, 2088, 2259
AfiI	CCNNNNNNNGG	4 cut(s)	575, 784, 1930, 2217
AflII	CTTAAG	1 cut(s)	257
AflIII	ACRYGT	2 cut(s)	1406, 1713
AhlI	ACTAGT	1 cut(s)	2146
AjnI	CCWGG	2 cut(s)	997, 1377
Alw21I	GWGCWC	3 cut(s)	986, 1154, 1656
Alw26I	GTCTC	2 cut(s)	395, 1915
Alw44I	GTGCAC	1 cut(s)	982
AlwI	GGATC	3 cut(s)	20, 436, 1431
AlwNI	CAGNNNCTG	1 cut(s)	1913
Ama87I	CYCGRG	2 cut(s)	1647, 2098
AoxI	GGCC	3 cut(s)	159, 1516, 2249
ApaLI	GTGCAC	1 cut(s)	982
ApeKI	GCWGC	6 cut(s)	660, 704, 1241, 1643, 1812, 2236
ApoI	RAATTY	1 cut(s)	990
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	1467
AspS9I	GGNCC	3 cut(s)	608, 1082, 2207
AsuC2I	CCSGG	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	350
AsuNHI	GCTAGC	1 cut(s)	968
AvaI	CYCGRG	2 cut(s)	1647, 2098
AvaII	GGWCC	3 cut(s)	608, 1082, 2207
BaeGI	GKGCMC	1 cut(s)	986
BalI	TGGCCA	1 cut(s)	1518
BanII	GRGCYC	1 cut(s)	1656
BbrPI	CACGTG	1 cut(s)	1407
BbsI	GAAGAC	2 cut(s)	348, 2038
Bbv12I	GWGCWC	3 cut(s)	986, 1154, 1656
BbvI	GCAGC	6 cut(s)	672, 691, 1228, 1630, 1824, 2248
BccI	CCATC	6 cut(s)	619, 1358, 1450, 1873, 2260, 2269
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	8 cut(s)	364, 398, 1418, 1452, 2206, 2228, 2240, 2262
BciT130I	CCWGG	2 cut(s)	999, 1379
BclI	TGATCA	1 cut(s)	1336
BcnI	CCSGG	1 cut(s)	867
BcoDI	GTCTC	2 cut(s)	395, 1915
BcuI	ACTAGT	1 cut(s)	2146
BfmI	CTRYAG	4 cut(s)	273, 1117, 1372, 1767
BfrI	CTTAAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	1864
BisI	GCNGC	6 cut(s)	661, 705, 1242, 1644, 1813, 2237
BlpI	GCTNAGC	2 cut(s)	183, 1233
BlsI	GCNGC	6 cut(s)	662, 706, 1243, 1645, 1814, 2238
Bme1390I	CCNGG	3 cut(s)	867, 999, 1379
Bme18I	GGWCC	3 cut(s)	608, 1082, 2207
BmeT110I	CYCGRG	2 cut(s)	1647, 2098
BmgT120I	GGNCC	3 cut(s)	608, 1082, 2207
BmiI	GGNNCC	4 cut(s)	1084, 1369, 1478, 2209
BmrFI	CCNGG	3 cut(s)	867, 999, 1379
BmsI	GCATC	5 cut(s)	83, 268, 1211, 1474, 2048
BmtI	GCTAGC	1 cut(s)	972
BpiI	GAAGAC	2 cut(s)	348, 2038
BplI	GAGNNNNNCTC	2 cut(s)	1630, 1662
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	2228
Bpu1102I	GCTNAGC	2 cut(s)	183, 1233
BpuMI	CCSGG	1 cut(s)	867
BsaAI	YACGTR	1 cut(s)	1407
BsaBI	GATNNNNATC	2 cut(s)	1035, 2001
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	69, 1378, 1472, 1519
Bsc4I	CCNNNNNNNGG	4 cut(s)	575, 784, 1930, 2217
Bse118I	RCCGGY	1 cut(s)	2185
Bse1I	ACTGG	2 cut(s)	537, 969
Bse3DI	GCAATG	4 cut(s)	595, 972, 1227, 1857
Bse8I	GATNNNNATC	2 cut(s)	1035, 2001
BseBI	CCWGG	2 cut(s)	999, 1379
BseDI	CCNNGG	4 cut(s)	69, 1378, 1472, 1519
BseGI	GGATG	3 cut(s)	486, 611, 1202
BseJI	GATNNNNATC	2 cut(s)	1035, 2001
BseLI	CCNNNNNNNGG	4 cut(s)	575, 784, 1930, 2217
BseMI	GCAATG	4 cut(s)	595, 972, 1227, 1857
BseMII	CTCAG	3 cut(s)	174, 774, 2242
BseNI	ACTGG	2 cut(s)	537, 969
BseRI	GAGGAG	2 cut(s)	9, 336
BseSI	GKGCMC	1 cut(s)	986
BseXI	GCAGC	6 cut(s)	672, 691, 1228, 1630, 1824, 2248
BseYI	CCCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	161, 1518, 2251
BsiHKAI	GWGCWC	3 cut(s)	986, 1154, 1656
BsiHKCI	CYCGRG	2 cut(s)	1647, 2098
BsiSI	CCGG	2 cut(s)	867, 2186
BslFI	GGGAC	1 cut(s)	2193
BslI	CCNNNNNNNGG	4 cut(s)	575, 784, 1930, 2217
BsmAI	GTCTC	2 cut(s)	395, 1915
BsmFI	GGGAC	1 cut(s)	2193
BsnI	GGCC	3 cut(s)	161, 1518, 2251
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	1647, 2098
Bsp1286I	GDGCHC	3 cut(s)	986, 1154, 1656
Bsp143I	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
Bsp1720I	GCTNAGC	2 cut(s)	183, 1233
Bsp19I	CCATGG	2 cut(s)	1472, 1519
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	3 cut(s)	161, 1518, 2251
BspCNI	CTCAG	3 cut(s)	175, 775, 2241
BspLI	GGNNCC	4 cut(s)	1084, 1369, 1478, 2209
BspMAI	CTGCAG	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	972
BspPI	GGATC	3 cut(s)	20, 436, 1431
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	4 cut(s)	595, 972, 1227, 1857
BsrFI	RCCGGY	1 cut(s)	2185
BsrI	ACTGG	2 cut(s)	537, 969
BssAI	RCCGGY	1 cut(s)	2185
BssECI	CCNNGG	4 cut(s)	69, 1378, 1472, 1519
BssMI	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
BssNAI	GTATAC	1 cut(s)	530
BssT1I	CCWWGG	2 cut(s)	1472, 1519
Bst1107I	GTATAC	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	999, 1379
Bst6I	CTCTTC	1 cut(s)	1501
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	1407
BstC8I	GCNNGC	5 cut(s)	678, 876, 880, 970, 1239
BstDEI	CTNAG	5 cut(s)	183, 783, 911, 1233, 2228
BstDSI	CCRYGG	2 cut(s)	1472, 1519
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	486, 611, 1202
BstKTI	GATC	8 cut(s)	28, 431, 1339, 1426, 1686, 1867, 2005, 2248
BstMAI	GTCTC	2 cut(s)	395, 1915
BstMBI	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 199, 710, 752, 974, 1158, 1238, 1778, 2233
BstNI	CCWGG	2 cut(s)	999, 1379
BstNSI	RCATGY	3 cut(s)	1717, 1812, 1976
BstSCI	CCNGG	3 cut(s)	865, 997, 1377
BstSFI	CTRYAG	4 cut(s)	273, 1117, 1372, 1767
BstSLI	GKGCMC	1 cut(s)	986
BstV1I	GCAGC	6 cut(s)	672, 691, 1228, 1630, 1824, 2248
BstV2I	GAAGAC	2 cut(s)	348, 2038
BstX2I	RGATCY	2 cut(s)	1423, 1864
BstYI	RGATCY	2 cut(s)	1423, 1864
BstZ17I	GTATAC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	161, 1518, 2251
BtgI	CCRYGG	2 cut(s)	1472, 1519
BtsCI	GGATG	3 cut(s)	486, 611, 1202
BtsI	GCAGTG	5 cut(s)	33, 150, 270, 1543, 1941
Cac8I	GCNNGC	5 cut(s)	678, 876, 880, 970, 1239
CaiI	CAGNNNCTG	1 cut(s)	1913
Cfr10I	RCCGGY	1 cut(s)	2185
Cfr13I	GGNCC	3 cut(s)	608, 1082, 2207
CseI	GACGC	1 cut(s)	1566
Csp6I	GTAC	6 cut(s)	1401, 1590, 1729, 2028, 2087, 2258
CspCI	CAANNNNNGTGG	2 cut(s)	1438, 1473
CviQI	GTAC	6 cut(s)	1401, 1590, 1729, 2028, 2087, 2258
DdeI	CTNAG	5 cut(s)	183, 783, 911, 1233, 2228
DpnI	GATC	8 cut(s)	27, 430, 1338, 1425, 1685, 1866, 2004, 2247
DpnII	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
EaeI	YGGCCR	2 cut(s)	1516, 2249
Eam1104I	CTCTTC	1 cut(s)	1501
EarI	CTCTTC	1 cut(s)	1501
Ecl136II	GAGCTC	1 cut(s)	1654
Eco130I	CCWWGG	2 cut(s)	1472, 1519
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	1656
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	3 cut(s)	608, 1082, 2207
Eco53kI	GAGCTC	1 cut(s)	1654
Eco57I	CTGAAG	3 cut(s)	1025, 1482, 2032
Eco72I	CACGTG	1 cut(s)	1407
Eco88I	CYCGRG	2 cut(s)	1647, 2098
EcoICRI	GAGCTC	1 cut(s)	1654
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	990
EcoRII	CCWGG	2 cut(s)	997, 1377
EcoT14I	CCWWGG	2 cut(s)	1472, 1519
EcoT38I	GRGCYC	1 cut(s)	1656
ErhI	CCWWGG	2 cut(s)	1472, 1519
FalI	AAGNNNNNCTT	5 cut(s)	38, 240, 272, 1452, 1484
FaqI	GGGAC	1 cut(s)	2193
FauNDI	CATATG	1 cut(s)	1965
FbaI	TGATCA	1 cut(s)	1336
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	6 cut(s)	661, 705, 1242, 1644, 1813, 2237
FokI	GGATG	3 cut(s)	473, 598, 1189
FriOI	GRGCYC	1 cut(s)	1656
Fsp4HI	GCNGC	6 cut(s)	661, 705, 1242, 1644, 1813, 2237
GluI	GCNGC	6 cut(s)	661, 705, 1242, 1644, 1813, 2237
GsaI	CCCAGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	161, 1518, 2251
HapII	CCGG	2 cut(s)	867, 2186
HgaI	GACGC	1 cut(s)	1566
HincII	GTYRAC	1 cut(s)	1921
HindII	GTYRAC	1 cut(s)	1921
HindIII	AAGCTT	1 cut(s)	1284
HinfI	GANTC	8 cut(s)	341, 1031, 1127, 1169, 1175, 1217, 1673, 2055
HpaI	GTTAAC	1 cut(s)	1921
HpaII	CCGG	2 cut(s)	867, 2186
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	6 cut(s)	103, 530, 984, 1308, 1630, 1921
Hpy8I	GTNNAC	6 cut(s)	103, 530, 984, 1308, 1630, 1921
HpyAV	CCTTC	7 cut(s)	151, 370, 370, 569, 743, 883, 2223
HpyCH4IV	ACGT	2 cut(s)	563, 1406
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 199, 710, 752, 974, 1158, 1238, 1778, 2233
HpyF3I	CTNAG	5 cut(s)	183, 783, 911, 1233, 2228
HpySE526I	ACGT	2 cut(s)	563, 1406
Ksp22I	TGATCA	1 cut(s)	1336
KspAI	GTTAAC	1 cut(s)	1921
Kzo9I	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
LmnI	GCTCC	5 cut(s)	22, 907, 1157, 1523, 2233
Lsp1109I	GCAGC	6 cut(s)	672, 691, 1228, 1630, 1824, 2248
LweI	GCATC	5 cut(s)	83, 268, 1211, 1474, 2048
MaeII	ACGT	2 cut(s)	563, 1406
MaeIII	GTNAC	4 cut(s)	338, 739, 1223, 1415
MalI	GATC	8 cut(s)	27, 430, 1338, 1425, 1685, 1866, 2004, 2247
MboI	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
MfeI	CAATTG	1 cut(s)	1145
MflI	RGATCY	2 cut(s)	1423, 1864
MhlI	GDGCHC	3 cut(s)	986, 1154, 1656
MlsI	TGGCCA	1 cut(s)	1518
MluNI	TGGCCA	1 cut(s)	1518
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	586, 1280
Mox20I	TGGCCA	1 cut(s)	1518
MroXI	GAANNNNTTC	1 cut(s)	1467
MscI	TGGCCA	1 cut(s)	1518
MseI	TTAA	8 cut(s)	114, 215, 258, 459, 927, 1208, 1901, 1920
MslI	CAYNNNNRTG	1 cut(s)	1874
Msp20I	TGGCCA	1 cut(s)	1518
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	2 cut(s)	867, 2186
MspR9I	CCNGG	3 cut(s)	867, 999, 1379
MunI	CAATTG	1 cut(s)	1145
MvaI	CCWGG	2 cut(s)	999, 1379
MwoI	GCNNNNNNNGC	9 cut(s)	14, 199, 710, 752, 974, 1158, 1238, 1778, 2233
NciI	CCSGG	1 cut(s)	867
NcoI	CCATGG	2 cut(s)	1472, 1519
NdeI	CATATG	1 cut(s)	1965
NdeII	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
NheI	GCTAGC	1 cut(s)	968
NlaIV	GGNNCC	4 cut(s)	1084, 1369, 1478, 2209
NmuCI	GTSAC	2 cut(s)	338, 1415
NspI	RCATGY	3 cut(s)	1717, 1812, 1976
PaeR7I	CTCGAG	2 cut(s)	1647, 2098
PceI	AGGCCT	1 cut(s)	161
PciI	ACATGT	1 cut(s)	1713
PdmI	GAANNNNTTC	1 cut(s)	1467
PfeI	GAWTC	7 cut(s)	1031, 1127, 1169, 1175, 1217, 1673, 2055
PkrI	GCNGC	6 cut(s)	662, 706, 1243, 1645, 1814, 2238
PleI	GAGTC	1 cut(s)	335
PmaCI	CACGTG	1 cut(s)	1407
PmlI	CACGTG	1 cut(s)	1407
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	1407
PscI	ACATGT	1 cut(s)	1713
PshBI	ATTAAT	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	1656
Psp6I	CCWGG	2 cut(s)	997, 1377
PspCI	CACGTG	1 cut(s)	1407
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	2 cut(s)	997, 1377
PspN4I	GGNNCC	4 cut(s)	1084, 1369, 1478, 2209
PspPI	GGNCC	3 cut(s)	608, 1082, 2207
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	1913
PsuI	RGATCY	2 cut(s)	1423, 1864
RsaI	GTAC	6 cut(s)	1402, 1591, 1730, 2029, 2088, 2259
RsaNI	GTAC	6 cut(s)	1401, 1590, 1729, 2028, 2087, 2258
RseI	CAYNNNNRTG	1 cut(s)	1874
SacI	GAGCTC	1 cut(s)	1656
SaqAI	TTAA	8 cut(s)	114, 215, 258, 459, 927, 1208, 1901, 1920
SatI	GCNGC	6 cut(s)	661, 705, 1242, 1644, 1813, 2237
Sau3AI	GATC	8 cut(s)	25, 428, 1336, 1423, 1683, 1864, 2002, 2245
Sau96I	GGNCC	3 cut(s)	608, 1082, 2207
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	867, 999, 1379
SduI	GDGCHC	3 cut(s)	986, 1154, 1656
SfaNI	GCATC	5 cut(s)	83, 268, 1211, 1474, 2048
SfcI	CTRYAG	4 cut(s)	273, 1117, 1372, 1767
Sfr274I	CTCGAG	2 cut(s)	1647, 2098
SinI	GGWCC	3 cut(s)	608, 1082, 2207
SlaI	CTCGAG	2 cut(s)	1647, 2098
SmiMI	CAYNNNNRTG	1 cut(s)	1874
SmlI	CTYRAG	3 cut(s)	257, 1647, 2098
SmoI	CTYRAG	3 cut(s)	257, 1647, 2098
SpeI	ACTAGT	1 cut(s)	2146
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	1656
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	865, 997, 1377
StyI	CCWWGG	2 cut(s)	1472, 1519
TaiI	ACGT	2 cut(s)	566, 1409
TaqI	TCGA	7 cut(s)	374, 1445, 1482, 1648, 1686, 2099, 2216
TatI	WGTACW	1 cut(s)	2086
TfiI	GAWTC	7 cut(s)	1031, 1127, 1169, 1175, 1217, 1673, 2055
Tru1I	TTAA	8 cut(s)	114, 215, 258, 459, 927, 1208, 1901, 1920
Tru9I	TTAA	8 cut(s)	114, 215, 258, 459, 927, 1208, 1901, 1920
TseFI	GTSAC	2 cut(s)	338, 1415
TseI	GCWGC	6 cut(s)	660, 704, 1241, 1643, 1812, 2236
Tsp45I	GTSAC	2 cut(s)	338, 1415
TspDTI	ATGAA	8 cut(s)	144, 360, 527, 813, 830, 902, 1236, 1572
TspGWI	ACGGA	2 cut(s)	232, 409
Vha464I	CTTAAG	1 cut(s)	257
VneI	GTGCAC	1 cut(s)	982
VpaK11BI	GGWCC	3 cut(s)	608, 1082, 2207
VspI	ATTAAT	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	990
XbaI	TCTAGA	1 cut(s)	1661
XceI	RCATGY	3 cut(s)	1717, 1812, 1976
XhoI	CTCGAG	2 cut(s)	1647, 2098
XmiI	GTMKAC	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.