Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011834

Physical Location & Seq

Genomic Coordinates Forward (+)

57283639 .. 57288554

Gene Structure 4916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGGCATCCATTGACATTCTAAACTCACCCAGGCTTTACATTCCCATACCCCACAGCCACTTCAAATCTCTAGCTCACTCAAAGCACCTCAATTTGATAAGAAGAAGTCAAAAGCAGCCAGCTTTCCCTCGCCGGTCACTCACCGTCCTCTGCTCACGGTCCGGTGATGCTAGCAAAGCCCCTGAGGATGATTTTGTGACCAGGGTCTTGAAGGAGAACCCAAGCCAGATTGAACCCAGGTACTTGATTGGTGAAAAGTTTTATACTTTGAAGGAAAAAGAGAGTTTGAGCAAGAAATCCAATGTGGGTTTTGCTGAACTCTTGGCAAAGAGGTTGAATTTCAAGAAGGCAGAGCTGAAGAAACAGAGCGGTGAGGCTCAAAGTGGTAGTGGAGTGAAGAAGAATGAGGAGGCTGTGTTTTTGAATGATATTTTGAGGGAGTACAAGGGGAAGCTCTATGTGCCTGAGCAAATTTTCGGAACCGAGTTGCCGGAGGAAGATGAATTTGAGAAGAGTTTGGAGGAATTGCCCAGGATGAGCTTTGAGGATTTTCAGAAAGCCATGAAGAATGATAAGGTTGACTTGTTGACTTCTAAGGAGGTTAAGGGTGCTTCTTATGGGTCCAGGGATTTCATTGTTGATTTGAAGGAGATCCCAGGAGAGAAGAGCTTGCATAGAACCAAATGGGCAATGAGGCTGGATGAGGGTGAAGCTCTGGCTCTTTTGGAGGAGTATACGGGTCCAAGATATGTGATAGAAAGACATACCACGTCTTCTGTTGGAAGCTTACCACAGTACCCTCATCCGGTGGCGTCTTCCATATCGAGCAGAGCGATGGTAGAGCTTGGAGTGGTAACAGCCTTAATGGTTGCTGCTGCAGTTGTTGTTGGAGGATTCCTGGCGTCTGCAGTATTTGCTGTTACCAGTTTCGTGTTTGTGTCAACTGTATATGTTGTGTGGCCTATAGTCAAGCCGTTTATCAGGCTTTTTCTTGGTCTCATCTTTGGTATCTTGGAGAGAGTATGGGAAAACATAGTTGATTTTTTCAGTGATGGAGGAATTTTCTCTAAATTATATGATTTTTACACTTTTGGTGGTGTCTCTGCCAGCCTTGAGATGTTAAAGCCAATTACAATTGTCCTTTTGACTATGGTCCTTCTTGTCCGTTTCACACTCTCAAGAAGACCTAAGAACTTCAGGAAGTGGGATCTGTGGCAAGGGATTGATTTTTCACGATCTAAAGCAGAAGCTCGTGTTGATGGATCAACTGGAGTCAAGTTTGGTGATGTGGCAGGGATTGATGAAGCAGTAGAGGAACTCCAGGAGTTGGTGAAGTACTTGAAGAACCCAGAACTGTTTGATAAAATGGGAATAAAGCCTCCTCATGGAGTTCTTTTAGAGGGCCCACCTGGATGTGGCAAGACCTTGGTTGCTAAAGCCATAGCCGGGGAGGCTGGTGTTCCATTTTACCAAATGGCAGGATCTGAGTTTGTTGAAGTTTTAGTTGGTGTTGGGTCTGCTCGTATTAGAGATCTATTCAAAAGAGCCAAGGTGAACAAACCATCAGTTATTTTCATTGATGAAATTGATGCATTGGCTACCAGGCGTCAAGGGATTTTCAAGGAATCCGGCGACCAACTGTATAATGCAGCCACTCAAGAGAGGGAAACTACACTAAACCAGCTCTTAATAGAACTTGATGGGTTTGATACTGGTAAAGGTGTTATCTTCTTAGCTGCTACAAATCGCCGGGATTTGCTAGACCCTGCACTTCTACGTCCAGGACGTTTTGATCGCAAGATAAAGATTCGTCCTCCTGGTCCAAAGGGAAGATTGGAGATTTTAAAAATCCATGCAAGCAAAGTTAAAATGTCAGAATCTGTTGATTTGTCCAGCTATGCATTGAACTTACCTGGATGGACGGGAGCAAAGTTGGCACAGCTGGTCCAAGAGGCTGCACTTGTTGCAGTTAGGAAGGGGCATGATTCAATTTATCGGTCAGACTTGGATGATGCAGTTGATAGACTTACAGTAGGACCGAAACGGGTTGGAATCGATTTGGGTCATCAGGGACAATGCCGTCGAGCTACTACTGAAGTTGGAGTTGCATTGACTTCTCACCTGCTTAGGCAATATGAGAATGCAAAAGTTGAGTCCTGTGATCGCATTTCAATCATTCCTCGTGGCCAGACACTGTCGCAAGTTGTATTTGATCGTCTTGACGATGAAGCATACATGTTTGAGCGTCGGCCACAATTGTTGCATCGCCTTCAGGTTTTACTTGGAGGGAGGGCTGCTGAAGAGGTAATATATGGACGGGACACATCAAGGGCATCAGTTGACTACCTTGCTGATGCATCTTGGCTTGCTCGTAAAATCTTGACTGTTTGGAATTTGGAGAATCCAATGGTCATACATGGAGAGCCACCACCTTGGAGGAAGAAACCCAAGTTTGTCGGCCCTCGACTGGACTTTGAGGGATCATTGTACGATGACTATGGCCTGATTGAACCACCTGTGAACTTCAATTTAGATGATCAGGTTGCACAAAGGACTGAAGAGCTGGTACAGAGCATGTATGAAAAAACACTTTCCTTGCTTAAGCGGCATCATGCAGCTTTGCTTAAAACCGTGAAGGTTCTTCTCGAACACAAGGAAATCAGCGGTGAAGAAATTGATTTTATACTGAACAAGTATCCTCCCCAAACACCCGTGAAGCTTCTATTACAAGAAGAAAATCCTGGTAGTCTGGACTTCATGAAACAGGAAGAGAAACGTGAGTTACAGTTTGCCCTTCCAACCCACCAAAAAGGCGAAACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010020 GO:0010154 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0042170 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

942

Amino Acids

105.7

Weight (kDa)

8.4

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	464 - 604	1.7e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	627 - 670	1.2e-07	AAA+ lid domain
Peptidase_M41	PF01434	699 - 799	5.6e-12	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23940
fragaria_vesca	FvH4_5g04870 FvH4_5g04870
malus_domestica	MD06G1109500.v1.1 MD14G1130500.v1.1
prunus_persica	Prupe.5G122500_v2.0.a1
pyrus_communis	pycom06g10310
rosa_chinensis	RchiOBHm_Chr7g0194221
rosa_laevigata	RLG00000004209
rosa_multiflora	Rmu_co8268851.1_g000001 Rmu_sc0000901.1_g000001 Rmu_sc0009433.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261490
rosa_rugosa	Rorug07G0014400
rosa_samantha	Rh7AG141800 Rh7BG142200 Rh7CG145900 Rh7DG143200
rosa_wichuraiana	Rw7G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2824
AarI	CACCTGC	1 cut(s)	2130
AasI	GACNNNNNNGTC	1 cut(s)	2079
Acc36I	ACCTGC	1 cut(s)	2130
AccB7I	CCANNNNNTGG	1 cut(s)	1327
AccBSI	CCGCTC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	734
AciI	CCGC	3 cut(s)	369, 2605, 2664
AclWI	GGATC	5 cut(s)	646, 1215, 1270, 1489, 2488
AcoI	YGGCCR	2 cut(s)	2185, 2249
AcsI	RAATTY	5 cut(s)	337, 471, 503, 1059, 2392
AcuI	CTGAAG	6 cut(s)	377, 1180, 2115, 2255, 2319, 2577
AcyI	GRCGYC	3 cut(s)	812, 902, 1606
AfaI	GTAC	6 cut(s)	242, 443, 797, 1337, 2489, 2568
AfiI	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
AflII	CTTAAG	1 cut(s)	2600
AflIII	ACRYGT	1 cut(s)	2235
AjiI	CACGTC	1 cut(s)	771
AjuI	GAANNNNNNNTTGG	2 cut(s)	1488, 1520
Alw26I	GTCTC	2 cut(s)	1001, 1105
AlwI	GGATC	5 cut(s)	646, 1215, 1270, 1489, 2488
AlwNI	CAGNNNCTG	3 cut(s)	1484, 1880, 2194
AoxI	GGCC	6 cut(s)	959, 1402, 2185, 2249, 2458, 2500
ApaI	GGGCCC	1 cut(s)	1406
ApeKI	GCWGC	8 cut(s)	115, 872, 875, 1649, 1736, 1955, 2294, 2615
ApoI	RAATTY	5 cut(s)	337, 471, 503, 1059, 2392
ArsI	GACNNNNNNTTYG	2 cut(s)	2138, 2170
AsuC2I	CCSGG	2 cut(s)	1447, 1751
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	7 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036
AxyI	CCTNAGG	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	1406
BaeI	ACNNNNGTAYC	2 cut(s)	779, 812
BalI	TGGCCA	1 cut(s)	2187
BanII	GRGCYC	1 cut(s)	1406
BarI	GAAGNNNNNNTAC	2 cut(s)	2550, 2582
BauI	CACGAG	2 cut(s)	1251, 2181
BbsI	GAAGAC	3 cut(s)	765, 807, 1189
BbvI	GCAGC	8 cut(s)	127, 859, 862, 1661, 1723, 1942, 2281, 2627
BccI	CCATC	6 cut(s)	829, 1046, 1253, 1570, 1694, 1911
BceAI	ACGGC	2 cut(s)	958, 2064
BciVI	GTATCC	1 cut(s)	2706
BclI	TGATCA	1 cut(s)	2536
BcnI	CCSGG	2 cut(s)	1447, 1751
BcoDI	GTCTC	2 cut(s)	1001, 1105
BfaI	CTAG	3 cut(s)	71, 171, 1760
BfmI	CTRYAG	3 cut(s)	876, 906, 963
BfrI	CTTAAG	1 cut(s)	2600
BfuAI	ACCTGC	1 cut(s)	2130
BfuI	GTATCC	1 cut(s)	2706
BglI	GCCNNNNNGGC	1 cut(s)	1451
BglII	AGATCT	1 cut(s)	1531
BisI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
BlsI	GCNGC	9 cut(s)	117, 874, 877, 1651, 1738, 1957, 2296, 2607, 2617
BmcAI	AGTACT	1 cut(s)	1337
Bme18I	GGWCC	7 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036
BmgBI	CACGTC	1 cut(s)	771
BmiI	GGNNCC	4 cut(s)	481, 622, 741, 1404
BmsI	GCATC	9 cut(s)	14, 157, 1579, 2002, 2272, 2342, 2344, 2366, 2617
BmtI	GCTAGC	1 cut(s)	174
BoxI	GACNNNNGTC	2 cut(s)	203, 1151
BpiI	GAAGAC	3 cut(s)	765, 807, 1189
BpmI	CTGGAG	2 cut(s)	1290, 1304
Bpu10I	CCTNAGC	2 cut(s)	465, 2126
BpuEI	CTTGAG	3 cut(s)	1133, 1162, 1641
BpuMI	CCSGG	2 cut(s)	1447, 1751
Bsa29I	ATCGAT	1 cut(s)	2055
BsaHI	GRCGYC	3 cut(s)	812, 902, 1606
BsaI	GGTCTC	1 cut(s)	1001
BsaWI	WCCGGW	2 cut(s)	161, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	4 cut(s)	924, 1273, 1717, 2472
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	2055
BseGI	GGATG	8 cut(s)	5, 193, 540, 706, 802, 1418, 1922, 2014
BseLI	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	174, 456, 1476
BseNI	ACTGG	4 cut(s)	924, 1273, 1717, 2472
BseRI	GAGGAG	3 cut(s)	422, 743, 1371
BseSI	GKGCMC	1 cut(s)	1406
BseXI	GCAGC	8 cut(s)	127, 859, 862, 1661, 1723, 1942, 2281, 2627
BsgI	GTGCAG	2 cut(s)	1752, 1941
BshFI	GGCC	6 cut(s)	961, 1404, 2187, 2251, 2460, 2502
BshVI	ATCGAT	1 cut(s)	2055
BsiSI	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
BslFI	GGGAC	2 cut(s)	2085, 2333
BslI	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
BsmAI	GTCTC	2 cut(s)	1001, 1105
BsmFI	GGGAC	2 cut(s)	2085, 2333
BsmI	GAATGC	1 cut(s)	2146
BsnI	GGCC	6 cut(s)	961, 1404, 2187, 2251, 2460, 2502
Bso31I	GGTCTC	1 cut(s)	1001
Bsp120I	GGGCCC	1 cut(s)	1402
Bsp1286I	GDGCHC	1 cut(s)	1406
BspACI	CCGC	3 cut(s)	369, 2605, 2664
BspANI	GGCC	6 cut(s)	961, 1404, 2187, 2251, 2460, 2502
BspCNI	CTCAG	3 cut(s)	175, 457, 1477
BspDI	ATCGAT	1 cut(s)	2055
BspHI	TCATGA	1 cut(s)	2757
BspLI	GGNNCC	4 cut(s)	481, 622, 741, 1404
BspMAI	CTGCAG	2 cut(s)	880, 910
BspMI	ACCTGC	1 cut(s)	2130
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	5 cut(s)	646, 1215, 1270, 1489, 2488
BspQI	GCTCTTC	2 cut(s)	659, 2553
BspTI	CTTAAG	1 cut(s)	2600
BspTNI	GGTCTC	1 cut(s)	1001
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	924, 1273, 1717, 2472
BssAI	RCCGGY	1 cut(s)	132
BssNAI	GTATAC	1 cut(s)	735
BssNI	GRCGYC	3 cut(s)	812, 902, 1606
BssSI	CACGAG	2 cut(s)	1251, 2181
BssT1I	CCWWGG	3 cut(s)	1425, 1548, 2432
Bst1107I	GTATAC	1 cut(s)	735
Bst2BI	CACGAG	2 cut(s)	1251, 2181
Bst6I	CTCTTC	5 cut(s)	506, 659, 2295, 2553, 2763
BstACI	GRCGYC	3 cut(s)	812, 902, 1606
BstAFI	CTTAAG	1 cut(s)	2600
BstAPI	GCANNNNNTGC	2 cut(s)	914, 1964
BstC8I	GCNNGC	6 cut(s)	120, 172, 671, 1108, 1858, 2367
BstDEI	CTNAG	7 cut(s)	183, 465, 594, 1188, 1485, 1732, 2126
BstF5I	GGATG	8 cut(s)	5, 193, 540, 706, 802, 1418, 1922, 2014
BstMAI	GTCTC	2 cut(s)	1001, 1105
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 460, 914, 1451, 1934, 1964, 2605
BstNSI	RCATGY	2 cut(s)	2239, 2578
BstPAI	GACNNNNGTC	2 cut(s)	203, 1151
BstSFI	CTRYAG	3 cut(s)	876, 906, 963
BstSLI	GKGCMC	1 cut(s)	1406
BstV1I	GCAGC	8 cut(s)	127, 859, 862, 1661, 1723, 1942, 2281, 2627
BstV2I	GAAGAC	3 cut(s)	765, 807, 1189
BstX2I	RGATCY	4 cut(s)	651, 1207, 1481, 1531
BstXI	CCANNNNNNTGG	1 cut(s)	2433
BstYI	RGATCY	4 cut(s)	651, 1207, 1481, 1531
BstZ17I	GTATAC	1 cut(s)	735
Bsu15I	ATCGAT	1 cut(s)	2055
Bsu36I	CCTNAGG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	2706
BsuRI	GGCC	6 cut(s)	961, 1404, 2187, 2251, 2460, 2502
BsuTUI	ATCGAT	1 cut(s)	2055
BtgZI	GCGATG	2 cut(s)	848, 2249
BtrI	CACGTC	1 cut(s)	771
BtsCI	GGATG	8 cut(s)	5, 193, 540, 706, 802, 1418, 1922, 2014
BtsIMutI	CAGTG	2 cut(s)	1054, 2192
BveI	ACCTGC	1 cut(s)	2130
Cac8I	GCNNGC	6 cut(s)	120, 172, 671, 1108, 1858, 2367
CaiI	CAGNNNCTG	3 cut(s)	1484, 1880, 2194
CciI	TCATGA	1 cut(s)	2757
Cfr10I	RCCGGY	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	2055
CpoI	CGGWCCG	1 cut(s)	159
CseI	GACGC	4 cut(s)	801, 891, 1595, 2234
Csp6I	GTAC	6 cut(s)	241, 442, 796, 1336, 2488, 2567
CspCI	CAANNNNNGTGG	2 cut(s)	2241, 2276
CspI	CGGWCCG	1 cut(s)	159
CviAII	CATG	9 cut(s)	562, 1385, 1853, 1982, 2236, 2417, 2575, 2612, 2758
CviQI	GTAC	6 cut(s)	241, 442, 796, 1336, 2488, 2567
DdeI	CTNAG	7 cut(s)	183, 465, 594, 1188, 1485, 1732, 2126
DraI	TTTAAA	1 cut(s)	1845
DrdI	GACNNNNNNGTC	1 cut(s)	2079
DseDI	GACNNNNNNGTC	1 cut(s)	2079
EaeI	YGGCCR	2 cut(s)	2185, 2249
Eam1104I	CTCTTC	5 cut(s)	506, 659, 2295, 2553, 2763
EarI	CTCTTC	5 cut(s)	506, 659, 2295, 2553, 2763
Eco130I	CCWWGG	3 cut(s)	1425, 1548, 2432
Eco24I	GRGCYC	1 cut(s)	1406
Eco31I	GGTCTC	1 cut(s)	1001
Eco47I	GGWCC	7 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036
Eco57I	CTGAAG	6 cut(s)	377, 1180, 2115, 2255, 2319, 2577
Eco81I	CCTNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	1402
EcoT14I	CCWWGG	3 cut(s)	1425, 1548, 2432
EcoT22I	ATGCAT	3 cut(s)	1594, 1903, 2359
EcoT38I	GRGCYC	1 cut(s)	1406
ErhI	CCWWGG	3 cut(s)	1425, 1548, 2432
FaeI	CATG	9 cut(s)	565, 1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	2 cut(s)	2085, 2333
FatI	CATG	9 cut(s)	561, 1384, 1852, 1981, 2235, 2416, 2574, 2611, 2757
FbaI	TGATCA	1 cut(s)	2536
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
FokI	GGATG	7 cut(s)	200, 547, 713, 789, 1425, 1929, 2021
FriOI	GRGCYC	1 cut(s)	1406
Fsp4HI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
FspBI	CTAG	3 cut(s)	71, 171, 1760
GluI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
GsuI	CTGGAG	2 cut(s)	1290, 1304
HaeIII	GGCC	6 cut(s)	961, 1404, 2187, 2251, 2460, 2502
HapII	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
HgaI	GACGC	4 cut(s)	801, 891, 1595, 2234
Hin1I	GRCGYC	3 cut(s)	812, 902, 1606
Hin1II	CATG	9 cut(s)	565, 1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
HincII	GTYRAC	4 cut(s)	580, 588, 942, 2341
HindII	GTYRAC	4 cut(s)	580, 588, 942, 2341
HindIII	AAGCTT	2 cut(s)	784, 2717
HinfI	GANTC	9 cut(s)	894, 1272, 1625, 1807, 1877, 1985, 2052, 2153, 2401
HpaII	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
Hpy166II	GTNNAC	7 cut(s)	580, 588, 735, 942, 1555, 2341, 2521
Hpy188I	TCNGA	5 cut(s)	479, 555, 1486, 1876, 2002
Hpy8I	GTNNAC	7 cut(s)	580, 588, 735, 942, 1555, 2341, 2521
Hpy99I	CGWCG	2 cut(s)	2085, 2250
HpyAV	CCTTC	9 cut(s)	205, 265, 340, 640, 1166, 1969, 2279, 2629, 2804
HpyCH4IV	ACGT	4 cut(s)	770, 1777, 1786, 2776
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 460, 914, 1451, 1934, 1964, 2605
HpyF3I	CTNAG	7 cut(s)	183, 465, 594, 1188, 1485, 1732, 2126
HpySE526I	ACGT	4 cut(s)	770, 1777, 1786, 2776
Hsp92I	GRCGYC	3 cut(s)	812, 902, 1606
Hsp92II	CATG	9 cut(s)	565, 1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
Ksp22I	TGATCA	1 cut(s)	2536
LguI	GCTCTTC	2 cut(s)	659, 2553
LmnI	GCTCC	1 cut(s)	1925
Lsp1109I	GCAGC	8 cut(s)	127, 859, 862, 1661, 1723, 1942, 2281, 2627
LweI	GCATC	9 cut(s)	14, 157, 1579, 2002, 2272, 2342, 2344, 2366, 2617
MaeI	CTAG	3 cut(s)	71, 171, 1760
MaeII	ACGT	4 cut(s)	770, 1777, 1786, 2776
MaeIII	GTNAC	5 cut(s)	135, 196, 853, 919, 2781
MbiI	CCGCTC	1 cut(s)	369
MfeI	CAATTG	2 cut(s)	1134, 2255
MflI	RGATCY	4 cut(s)	651, 1207, 1481, 1531
MhlI	GDGCHC	1 cut(s)	1406
MlsI	TGGCCA	1 cut(s)	2187
MluNI	TGGCCA	1 cut(s)	2187
MlyI	GAGTC	2 cut(s)	1281, 2162
MmeI	TCCRAC	5 cut(s)	760, 868, 2029, 2080, 2822
Mox20I	TGGCCA	1 cut(s)	2187
Mph1103I	ATGCAT	3 cut(s)	1594, 1903, 2359
MscI	TGGCCA	1 cut(s)	2187
MseI	TTAA	8 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2601, 2625
MslI	CAYNNNNRTG	1 cut(s)	1411
Msp20I	TGGCCA	1 cut(s)	2187
MspA1I	CMGCKG	2 cut(s)	1942, 2664
MspCI	CTTAAG	1 cut(s)	2600
MspI	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
MunI	CAATTG	2 cut(s)	1134, 2255
Mva1269I	GAATGC	1 cut(s)	2146
MwoI	GCNNNNNNNGC	7 cut(s)	176, 460, 914, 1451, 1934, 1964, 2605
NciI	CCSGG	2 cut(s)	1447, 1751
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	9 cut(s)	565, 1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
NlaIV	GGNNCC	4 cut(s)	481, 622, 741, 1404
NmuCI	GTSAC	2 cut(s)	135, 196
NsiI	ATGCAT	3 cut(s)	1594, 1903, 2359
NspI	RCATGY	2 cut(s)	2239, 2578
PagI	TCATGA	1 cut(s)	2757
PaqCI	CACCTGC	1 cut(s)	2130
PciI	ACATGT	1 cut(s)	2235
PciSI	GCTCTTC	2 cut(s)	659, 2553
PcsI	WCGNNNNNNNCGW	2 cut(s)	830, 1783
PctI	GAATGC	1 cut(s)	2146
PfeI	GAWTC	7 cut(s)	894, 1625, 1807, 1877, 1985, 2052, 2401
PflFI	GACNNNGTC	1 cut(s)	2194
PflMI	CCANNNNNTGG	1 cut(s)	1327
PfoI	TCCNGGA	2 cut(s)	1320, 1780
PkrI	GCNGC	9 cut(s)	117, 874, 877, 1651, 1738, 1957, 2296, 2607, 2617
PleI	GAGTC	2 cut(s)	1280, 2161
PpsI	GAGTC	2 cut(s)	1280, 2161
PscI	ACATGT	1 cut(s)	2235
PshAI	GACNNNNGTC	2 cut(s)	203, 1151
PsiI	TTATAA	1 cut(s)	2824
PspN4I	GGNNCC	4 cut(s)	481, 622, 741, 1404
PspOMI	GGGCCC	1 cut(s)	1402
PstI	CTGCAG	2 cut(s)	880, 910
PstNI	CAGNNNCTG	3 cut(s)	1484, 1880, 2194
PsuI	RGATCY	4 cut(s)	651, 1207, 1481, 1531
PsyI	GACNNNGTC	1 cut(s)	2194
PvuII	CAGCTG	1 cut(s)	1942
RsaI	GTAC	6 cut(s)	242, 443, 797, 1337, 2489, 2568
RsaNI	GTAC	6 cut(s)	241, 442, 796, 1336, 2488, 2567
RseI	CAYNNNNRTG	1 cut(s)	1411
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	659, 2553
SaqAI	TTAA	8 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2601, 2625
SatI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
ScaI	AGTACT	1 cut(s)	1337
SchI	GAGTC	2 cut(s)	1281, 2162
SduI	GDGCHC	1 cut(s)	1406
SfaNI	GCATC	9 cut(s)	14, 157, 1579, 2002, 2272, 2342, 2344, 2366, 2617
SfcI	CTRYAG	3 cut(s)	876, 906, 963
SinI	GGWCC	7 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036
SmiMI	CAYNNNNRTG	1 cut(s)	1411
SmlI	CTYRAG	4 cut(s)	1112, 1177, 1656, 2600
SmoI	CTYRAG	4 cut(s)	1112, 1177, 1656, 2600
SsiI	CCGC	3 cut(s)	369, 2605, 2664
SspMI	CTAG	3 cut(s)	71, 171, 1760
StyI	CCWWGG	3 cut(s)	1425, 1548, 2432
TaiI	ACGT	4 cut(s)	773, 1780, 1789, 2779
TaqI	TCGA	5 cut(s)	824, 2055, 2083, 2464, 2646
TaqII	GACCGA	2 cut(s)	1986, 2053
TatI	WGTACW	2 cut(s)	441, 1335
TauI	GCSGC	1 cut(s)	2608
TfiI	GAWTC	7 cut(s)	894, 1625, 1807, 1877, 1985, 2052, 2401
Tru1I	TTAA	8 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2601, 2625
Tru9I	TTAA	8 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2601, 2625
TscAI	CASTG	2 cut(s)	1054, 2199
TseFI	GTSAC	2 cut(s)	135, 196
TseI	GCWGC	8 cut(s)	115, 872, 875, 1649, 1736, 1955, 2294, 2615
Tsp45I	GTSAC	2 cut(s)	135, 196
TspGWI	ACGGA	1 cut(s)	1154
TspRI	CASTG	2 cut(s)	1054, 2199
Tth111I	GACNNNGTC	1 cut(s)	2194
Van91I	CCANNNNNTGG	1 cut(s)	1327
Vha464I	CTTAAG	1 cut(s)	2600
VpaK11BI	GGWCC	7 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036
XapI	RAATTY	5 cut(s)	337, 471, 503, 1059, 2392
XceI	RCATGY	2 cut(s)	2239, 2578
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	3 cut(s)	71, 171, 1760
ZrmI	AGTACT	1 cut(s)	1337
Zsp2I	ATGCAT	3 cut(s)	1594, 1903, 2359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.