Rorug07G0014400

ATP-dependent zinc metalloprotease

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
1157014 .. 1160862
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0014400.1

Sequence Viewer

Length: 1491 bp
ATGGCTTCCGCTAACGGAAATGGAAATGGAGGACAAGAGCGTGAGATACAGAAGAGTTATTGGGAGGAGAACTCGACCGATTTGACGGTCGAGTCAATGATGCTGGATTCCAAAGCCTCCGATCTTGACAAAGAAGAGCGACCTGAGGTGCTTTCCATGCTCCCACCGTATGAGGGTAAATCGGTTTTGGAACTGGGAGCTGGGATTGGTCGTTTCACCGGCGAATTAGCACAAAAGGCTGGTCAGCTTATTGCAATGGACTTCATTGACAATGTGATAAAGAAGAATGAAAGCATCAATGGACACCATAAGAACGTCAAGTTCATGTGTGCTGATGTGACATCCCCCGGCCTGAAGATATCTGAAGAATCAGTGGATTTGATATTCTCAAACTGGCTTCTTATGTATCTATCTGATAAGGAGGTGGAGAATTTGGCAGAAAGGATGATGAAATGGTTGAAGGTTGGTGGATATATTTTCTTCCGAGAATCTTGTTTCCACCAATCCGGAGACTCTAAGCGGAAATACAACCCAACCCATTACCGAGAGCCCCGATTTTACAGCAGAGTGTTTAAAGAATGCCATATGTGTGATGAATCTGGGAATAACTTTGAACTCTCTCTTGTTAGCTGCAAATGTATTGGAGCTTATGTTCGGAACAAAAAGAATCAAAATCAGATTTGCTGGATATGGCAGAAGGTTGCTTCACAGAATGATAGAAAGTTCCAGCAGTTCTTAGATAATGTCCAGTATAAGAGTAATGGCATATTAAGATATGAGCGTGTCTTTGGACGGGGATTTGTGAGCACAGGAGGCATTGAGACAACTAAGGAATTTGTGGCAAAGTTGGAACTTGAGCCTGGCCAGAAAGTTTTAGATGTTGGATGTGGAATTGGGGGAGGTGACTTTTACATGGCCAGTACCTTTGATGTTGAGGTTGTTGGCATTGACCTCTCTGTAAACATGATTTCCTTTGCCCTTGAACAATCCATTGGACTGAAATGTGCTGTTGAGTTTGAAGTTGTGGATTGCACCACAAAAACATATCCAGACAACACCTTTGATGTGATATACAGCCGCGATACCATTTTACACATTCAAGACAAGCCTGCATTATTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGTAAAGTTCTCATCACTGACTACTGTAGGAGTGCTGGAACTCCTTCTGCAGATTTTGCCGAGTACATAAAGCAAAGAGGATATGACCTCCATGATGTAAAAGCATATGGTCAGATGCTTACGGATGCTGGTTTTGATGATGTCATTGCTGAGGATCGTACTGATCAGTTCATAAAAGTTCTGCAGCGGGAATTGAATGCCGTTGAGAAGGACAAGGATGCATTCATTGAGGACTTTTCTGAAGAGGACTACAATGACATAGTTGGTGGATGGAAGGCAAAGCTGGTCAGGACCAACTCAGGAGAGCAGAAGTGGGGCCTCTTCATTGCCAAGAAGAAATGA

Protein Analysis

496

Amino Acids

56.36

Weight (kDa)

5.33

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 51 - 185 1.2e-06 Methyltransferase domain
Methyltransf_31 PF13847 59 - 173 2.9e-10 Methyltransferase domain
Methyltransf_PK PF05891 60 - 196 3.7e-08 AdoMet dependent proline di-methyltransferase
TehB PF03848 61 - 159 7.1e-06 Tellurite resistance protein TehB
Methyltransf_25 PF13649 62 - 157 1.7e-13 Methyltransferase domain
Methyltransf_11 PF08241 63 - 161 3.6e-13 Methyltransferase domain
Methyltransf_12 PF08242 63 - 159 1.2e-07 Methyltransferase domain
Ubie_methyltran PF01209 277 - 394 5.9e-09 ubiE/COQ5 methyltransferase family
CMAS PF02353 277 - 465 1.2e-13 Mycolic acid cyclopropane synthetase
Methyltransf_23 PF13489 279 - 431 1.4e-19 Methyltransferase domain
Methyltransf_31 PF13847 286 - 395 3.4e-20 Methyltransferase domain
Methyltransf_25 PF13649 291 - 384 7.4e-18 Methyltransferase domain
Methyltransf_11 PF08241 292 - 388 2.2e-18 Methyltransferase domain
Methyltransf_12 PF08242 292 - 385 3.8e-13 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011834)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccII CGCG 1 cut(s) 1080
AccIII TCCGGA 1 cut(s) 506
AciI CCGC 4 cut(s) 9, 520, 1078, 1336
AclWI GGATC 2 cut(s) 1116, 1311
AcoI YGGCCR 2 cut(s) 862, 915
AcsI RAATTY 2 cut(s) 430, 833
AcuI CTGAAG 3 cut(s) 374, 384, 1410
AfaI GTAC 3 cut(s) 922, 1214, 1309
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 7 cut(s) 460, 614, 983, 1019, 1100, 1141, 1345
AjnI CCWGG 2 cut(s) 859, 1144
AjuI GAANNNNNNNTTGG 2 cut(s) 975, 1007
AloI GAACNNNNNNTCC 4 cut(s) 636, 668, 1140, 1172
AluBI AGCT 5 cut(s) 200, 247, 630, 647, 1432
AluI AGCT 5 cut(s) 200, 247, 630, 647, 1432
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 2 cut(s) 504, 815
AlwI GGATC 2 cut(s) 1116, 1311
Aor13HI TCCGGA 1 cut(s) 506
AoxI GGCC 4 cut(s) 349, 862, 915, 1465
ApeKI GCWGC 2 cut(s) 630, 1333
ApoI RAATTY 2 cut(s) 430, 833
ArsI GACNNNNNNTTYG 4 cut(s) 226, 258, 1043, 1075
Asp700I GAANNNNTTC 1 cut(s) 1192
AspS9I GGNCC 2 cut(s) 1440, 1465
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 208, 914
AvaII GGWCC 1 cut(s) 1440
AxyI CCTNAGG 1 cut(s) 144
BalI TGGCCA 2 cut(s) 864, 917
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 809
BbvCI CCTCAGC 1 cut(s) 1299
BbvI GCAGC 2 cut(s) 617, 1345
BccI CCATC 1 cut(s) 1413
BceAI ACGGC 1 cut(s) 1334
BciT130I CCWGG 2 cut(s) 861, 1146
BclI TGATCA 1 cut(s) 1312
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 504, 815
BfmI CTRYAG 3 cut(s) 1174, 1197, 1331
BisI GCNGC 3 cut(s) 631, 1078, 1334
BlsI GCNGC 3 cut(s) 632, 1079, 1335
Bme1390I CCNGG 3 cut(s) 348, 861, 1146
Bme18I GGWCC 1 cut(s) 1440
BmgT120I GGNCC 2 cut(s) 1440, 1465
BmiI GGNNCC 1 cut(s) 1466
BmrFI CCNGG 3 cut(s) 348, 861, 1146
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 5 cut(s) 90, 303, 1254, 1264, 1357
BmuI ACTGGG 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu10I CCTNAGC 1 cut(s) 1299
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 506
BsaXI ACNNNNNCTCC 4 cut(s) 636, 666, 1140, 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 4 cut(s) 198, 398, 748, 918
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 3 cut(s) 261, 1293, 1473
BseAI TCCGGA 1 cut(s) 506
BseBI CCWGG 2 cut(s) 861, 1146
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 6 cut(s) 341, 450, 890, 1279, 1372, 1424
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 3 cut(s) 261, 1293, 1473
BseMII CTCAG 3 cut(s) 135, 1290, 1461
BseNI ACTGG 4 cut(s) 198, 398, 748, 918
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 617, 1345
BseYI CCCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 1080
Bsh1285I CGRYCG 2 cut(s) 78, 90
BshFI GGCC 4 cut(s) 351, 864, 917, 1467
BsiEI CGRYCG 2 cut(s) 78, 90
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 3 cut(s) 219, 348, 507
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 504, 815
BsmI GAATGC 3 cut(s) 584, 1351, 1370
BsnI GGCC 4 cut(s) 351, 864, 917, 1467
Bsp1286I GDGCHC 2 cut(s) 552, 809
Bsp13I TCCGGA 1 cut(s) 506
Bsp143I GATC 4 cut(s) 121, 1121, 1303, 1312
BspACI CCGC 4 cut(s) 9, 520, 1078, 1336
BspANI GGCC 4 cut(s) 351, 864, 917, 1467
BspCNI CTCAG 3 cut(s) 136, 1291, 1460
BspEI TCCGGA 1 cut(s) 506
BspFNI CGCG 1 cut(s) 1080
BspLI GGNNCC 1 cut(s) 1466
BspMAI CTGCAG 2 cut(s) 1201, 1335
BspPI GGATC 2 cut(s) 1116, 1311
BspQI GCTCTTC 1 cut(s) 129
BsrDI GCAATG 3 cut(s) 261, 1293, 1473
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 4 cut(s) 198, 398, 748, 918
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 4 cut(s) 121, 1121, 1303, 1312
Bst2UI CCWGG 2 cut(s) 861, 1146
Bst4CI ACNGT 3 cut(s) 88, 168, 1175
Bst6I CTCTTC 4 cut(s) 47, 129, 1386, 1475
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 6 cut(s) 144, 516, 736, 828, 1299, 1447
BstF5I GGATG 6 cut(s) 341, 450, 890, 1279, 1372, 1424
BstFNI CGCG 1 cut(s) 1080
BstKTI GATC 4 cut(s) 124, 1124, 1306, 1315
BstMAI GTCTC 2 cut(s) 504, 815
BstMBI GATC 4 cut(s) 121, 1121, 1303, 1312
BstMCI CGRYCG 2 cut(s) 78, 90
BstMWI GCNNNNNNNGC 4 cut(s) 157, 236, 813, 1205
BstNI CCWGG 2 cut(s) 861, 1146
BstSCI CCNGG 3 cut(s) 346, 859, 1144
BstSFI CTRYAG 3 cut(s) 1174, 1197, 1331
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 2 cut(s) 617, 1345
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 4 cut(s) 351, 864, 917, 1467
BtsCI GGATG 6 cut(s) 341, 450, 890, 1279, 1372, 1424
BtsIMutI CAGTG 2 cut(s) 378, 1164
Cac8I GCNNGC 1 cut(s) 1110
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 1440, 1465
Csp6I GTAC 3 cut(s) 921, 1213, 1308
CviAII CATG 5 cut(s) 157, 325, 913, 964, 1241
CviQI GTAC 3 cut(s) 921, 1213, 1308
DdeI CTNAG 6 cut(s) 144, 516, 736, 828, 1299, 1447
DpnI GATC 4 cut(s) 123, 1123, 1305, 1314
DpnII GATC 4 cut(s) 121, 1121, 1303, 1312
DraI TTTAAA 1 cut(s) 574
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 862, 915
Eam1104I CTCTTC 4 cut(s) 47, 129, 1386, 1475
EarI CTCTTC 4 cut(s) 47, 129, 1386, 1475
Eco24I GRGCYC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 1440
Eco57I CTGAAG 3 cut(s) 374, 384, 1410
Eco81I CCTNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 1465
EcoRII CCWGG 2 cut(s) 859, 1144
EcoRV GATATC 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 1372
EcoT38I GRGCYC 1 cut(s) 552
FaeI CATG 5 cut(s) 160, 328, 916, 967, 1244
FatI CATG 5 cut(s) 156, 324, 912, 963, 1240
FauI CCCGC 1 cut(s) 1329
FauNDI CATATG 2 cut(s) 585, 1255
FbaI TGATCA 1 cut(s) 1312
Fnu4HI GCNGC 3 cut(s) 631, 1078, 1334
FokI GGATG 6 cut(s) 328, 457, 897, 1286, 1379, 1431
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 631, 1078, 1334
GluI GCNGC 3 cut(s) 631, 1078, 1334
GsaI CCCAGC 1 cut(s) 204
HaeIII GGCC 4 cut(s) 351, 864, 917, 1467
HapII CCGG 3 cut(s) 219, 348, 507
Hin1II CATG 5 cut(s) 160, 328, 916, 967, 1244
HinfI GANTC 7 cut(s) 92, 107, 368, 488, 512, 596, 667
HpaII CCGG 3 cut(s) 219, 348, 507
HphI GGTGA 2 cut(s) 208, 914
Hpy166II GTNNAC 1 cut(s) 961
Hpy188I TCNGA 9 cut(s) 121, 364, 415, 485, 657, 678, 1121, 1263, 1390
Hpy188III TCNNGA 6 cut(s) 125, 507, 1049, 1100, 1438, 1449
Hpy8I GTNNAC 1 cut(s) 961
HpyAV CCTTC 5 cut(s) 454, 691, 1203, 1351, 1417
HpyCH4III ACNGT 3 cut(s) 88, 168, 1175
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 7 cut(s) 254, 633, 1032, 1112, 1199, 1333, 1370
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 236, 813, 1205
HpyF3I CTNAG 6 cut(s) 144, 516, 736, 828, 1299, 1447
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 5 cut(s) 160, 328, 916, 967, 1244
Kpn2I TCCGGA 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 1312
Kzo9I GATC 4 cut(s) 121, 1121, 1303, 1312
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 3 cut(s) 165, 197, 644
Lsp1109I GCAGC 2 cut(s) 617, 1345
LweI GCATC 5 cut(s) 90, 303, 1254, 1264, 1357
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 337, 902
MalI GATC 4 cut(s) 123, 1123, 1305, 1314
MboI GATC 4 cut(s) 121, 1121, 1303, 1312
MboII GAAGA 8 cut(s) 64, 146, 295, 367, 377, 472, 1403, 1462
MhlI GDGCHC 2 cut(s) 552, 809
MlsI TGGCCA 2 cut(s) 864, 917
MluCI AATT 5 cut(s) 224, 430, 833, 891, 1340
MluNI TGGCCA 2 cut(s) 864, 917
MlyI GAGTC 2 cut(s) 101, 506
MmeI TCCRAC 2 cut(s) 828, 862
Mox20I TGGCCA 2 cut(s) 864, 917
Mph1103I ATGCAT 1 cut(s) 1372
MroI TCCGGA 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 1192
MscI TGGCCA 2 cut(s) 864, 917
MseI TTAA 2 cut(s) 573, 770
MslI CAYNNNNRTG 1 cut(s) 588
Msp20I TGGCCA 2 cut(s) 864, 917
MspA1I CMGCKG 1 cut(s) 1336
MspI CCGG 3 cut(s) 219, 348, 507
MspR9I CCNGG 3 cut(s) 348, 861, 1146
Mva1269I GAATGC 3 cut(s) 584, 1351, 1370
MvaI CCWGG 2 cut(s) 861, 1146
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 4 cut(s) 157, 236, 813, 1205
NciI CCSGG 1 cut(s) 348
NdeI CATATG 2 cut(s) 585, 1255
NdeII GATC 4 cut(s) 121, 1121, 1303, 1312
NlaIII CATG 5 cut(s) 160, 328, 916, 967, 1244
NlaIV GGNNCC 1 cut(s) 1466
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 2 cut(s) 337, 902
NsiI ATGCAT 1 cut(s) 1372
PciSI GCTCTTC 1 cut(s) 129
PctI GAATGC 3 cut(s) 584, 1351, 1370
PdmI GAANNNNTTC 1 cut(s) 1192
PfeI GAWTC 5 cut(s) 107, 368, 488, 596, 667
PkrI GCNGC 3 cut(s) 632, 1079, 1335
PleI GAGTC 2 cut(s) 100, 506
PpsI GAGTC 2 cut(s) 100, 506
Psp6I CCWGG 2 cut(s) 859, 1144
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 859, 1144
PspN4I GGNNCC 1 cut(s) 1466
PspPI GGNCC 2 cut(s) 1440, 1465
PstI CTGCAG 2 cut(s) 1201, 1335
RsaI GTAC 3 cut(s) 922, 1214, 1309
RsaNI GTAC 3 cut(s) 921, 1213, 1308
RseI CAYNNNNRTG 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 573, 770
SatI GCNGC 3 cut(s) 631, 1078, 1334
Sau3AI GATC 4 cut(s) 121, 1121, 1303, 1312
Sau96I GGNCC 2 cut(s) 1440, 1465
SchI GAGTC 2 cut(s) 101, 506
ScrFI CCNGG 3 cut(s) 348, 861, 1146
SduI GDGCHC 2 cut(s) 552, 809
SfaNI GCATC 5 cut(s) 90, 303, 1254, 1264, 1357
SfcI CTRYAG 3 cut(s) 1174, 1197, 1331
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 1440
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 5 cut(s) 224, 430, 833, 891, 1340
SsiI CCGC 4 cut(s) 9, 520, 1078, 1336
StyD4I CCNGG 3 cut(s) 346, 859, 1144
TaaI ACNGT 3 cut(s) 88, 168, 1175
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 74, 90
TaqII GACCGA 1 cut(s) 92
TasI AATT 5 cut(s) 224, 430, 833, 891, 1340
TatI WGTACW 1 cut(s) 1212
TauI GCSGC 1 cut(s) 1080
TfiI GAWTC 5 cut(s) 107, 368, 488, 596, 667
Tru1I TTAA 2 cut(s) 573, 770
Tru9I TTAA 2 cut(s) 573, 770
TscAI CASTG 2 cut(s) 378, 1171
TseFI GTSAC 2 cut(s) 337, 902
TseI GCWGC 2 cut(s) 630, 1333
Tsp45I GTSAC 2 cut(s) 337, 902
TspDTI ATGAA 8 cut(s) 253, 303, 313, 464, 609, 1309, 1363, 1462
TspGWI ACGGA 2 cut(s) 30, 1286
TspRI CASTG 2 cut(s) 378, 1171
VpaK11BI GGWCC 1 cut(s) 1440
XapI RAATTY 2 cut(s) 430, 833
XmnI GAANNNNTTC 1 cut(s) 1192
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.