Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011834

Physical Location & Seq

Genomic Coordinates Reverse (-)

11881438 .. 11889650

Gene Structure 8213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG145900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4671 bp

ATGGCATCCATTGACATTCTAAACTCACCCAGGCTTTACATTCCCAAACCCCACAGCCACTTCAAATCTCTAGCTCACTCAAAGCACCTCAATTTGATAAGAAGAATTCAAAAGCAGCCAGCTTTCCCTCGCCGGTCACTCACCGTCCTCTGCTCACGGTCCGGTGACGCTAGCAAAGCCCCTGAGGATGATTTTGTGACCAGGGTCTTGAAGGAGAACCCAAGCCAGATTGAACCCAGGTACTTGATTGGTGACAAGTTTTATACTTTGAAGGAAAAAGAGAGTTTGAGCAAGAAATCCAATGTGGGTTTTGCTGAACTCTTGGCAAAGAGGTTGAATTTCAACAAGGCAGAGCTGAAGAAACAGAGCGGTGAGGCTCAAAGTGGTAGTGGAGTGAAGAAGAATGAGGAGGCTGTGTTTTTGAATGATATTTTGAGGGAGTACAAGGGGAAGCTCTATGTGCCTGAGCAAATTTTCGGAACCGAGTTGCCGGAGGAAGATGAATTTGAGAAGAGTTTGGAGGAATTGCCCAAGATGAGCTTTGAGGATTTTCAGAAAGCTATGAAGAATGATAAGGTTGACTTGTTGACTTCTAAGGAAGTTAAGGGTCCTTCTTATGGGTCCAGGGATTTCATTGTTGATTTGAAGGAGATCCCAGGAGAGAAGAGCTTGCATAGAACCAAATGGGCAATGAGGCTGGATGAGGGTGAAGCTCTGGCTCTTTTGGAGGATTATACGGGTCCAAGATATGTGATAGAAAGACATACCACGTCTTCCGTTGGAAGCTTACCACAGTACCCTCATCCGGTGGCGTCTTCCATATCGAGCAGAATGATGGTAGAGCTTGGAGTGGTAACAGCCTTAATGGTTGCTGCTGCAGTTGTTGTTGGAGGATTCCTGGCATCTGCAGTATTTGCTGTTACCAGTTTCGTGTTTGTGTCAACTGTATATGTTGTGTGGCCTATAGTCAAGCCGTTTATCAGGCTTTTTCTTGGTCTCGTCTTTGGTATTTTGGAGAGAGTATGGGAAAATATTGTTGATTTTTTCAGTGATGGAGGAATTTTCTCTAAATTATATGATTTTTACACTTTTGGTGGTGTCTCTGCCAGCCTTGAGATGTTAAAGCCAATTACAATTGTCCTTTTGACTATGGTCCTTCTTGTCCGTTTCACACTCTCAAGAAGACCTAAGAACTTCAGGAAGTGGGACCTGTGGCAAGGGATTGATTTTTCACGGTCTAAAGCAGAAGCTCGTGTTGATGGATCAACTGGAGTCAAGTTTGGCGACGTGGCAGGGATTGATGAAGCAGTAGAGGAACTCCAGGAGTTGGTGAAGTACTTGAAGAACCCAGAACTGTTTGATAAAATGGGAATAAAGCCTCCTCATGGAGTTCTTTTAGAGGGTCCACCTGGATGTGGCAAGACCTTGGTTGCTAAAGCCATAGCCGGGGAGGCTGGTGTTCCATTTTACCAAATGGCAGGATCTGAGTTTGTTGAAGTTTTAGTTGGTGTTGGGTCTGCTCGTATTAGAGATCTATTCAAAAGAGCCAAGGTGAACAAACCATCAGTTATTTTCATTGATGAAATTGATGCATTGGCTACCAGGCGTCAAGGGATTTTCAAGGAATCCGGCGACCAACTGTATAATGCAGCCACTCAAGAGAGGGAAACTACACTAAACCAGCTCTTAATAGAACTTGATGGGTTTGATACTGGTAAAGGTGTTATCTTCTTAGCTGCTACAAATCGCCGGGATTTGCTAGACCCTGCACTTCTACGTCCAGGTCGTTTTGATCGCAAGATAAAGATTCGTCCTCCTGGTCCAAAGGGAAGATTGGAGATTTTAAAAATCCATGCAAGCAAAGTTAAAATGTCAGAATCTGTTGATTTGTCCAGCTATGCATTGAACTTACCTGGATGGACGGGAGCAAAGTTGGCACAGCTGGTCCAAGAGGCTGCACTTGTTGCAGTAAGGAAGGGGCATGATTCAATTTATCGGTCAGACTTGGATGATGCAGTTGATAGACTTACAGTAGGACCGAAACGGGTTGGAATCGATTTGGGTCATCAGGGACAATGCCGTCGAGCTACTACTGAAGTTGGAGTTGCATTGACTTCTCACCTGCTTAGGCAATATGAGAATGCAGAAGTTGAGTCCTGTGATCGCATTTCAATCATTCCTCGTGGCCAGACACTGTCGCAAGTTGTATTTGATCGTCTTGATGATGAATCATACATGTTTGAGCGTCGGCCACAATTGTTGCATCGCCTTCAGGTTTTACTTGGAGGGAGGGCTGCTGAAGAGGTCATATATGGACGGGACACATCAAGGGCATCAGTTGACTACCTTGCTGATGCATCTTGGCTTGCTCGTAAAATCTTAACTGTTTGGAATTTGGAGAATCCAATGGTCATACATGGAGAGCCACCACCTTGGAGGAAGAAACCCAAGTTTGTCGGCCCTCGACTGGACTTTGAGGGTTCATTGTACGATGACTATGGCCTGATTGAACCACCAGTGAACTTCAATTTAGATGATCAGGTTGCACAAAGGACTGAAGAGCTGGTAGAGAGCATGTATGGAAAAACGCTTTCTTTGCTTAAGCGGCATCATGCAGCCTTGCTTAAAACCGTGAAAGTTCTTCTCGAACACAAGGAAATCAGCGGTGAAGAAATTGATTTTATACTGAACAAGTATCCTCCCCAAACACCCGTGAAGCTTCTATTAGAAGAAGAAAATCCTGGTAGTCTGGACTTCATGAAACAGGAAGAGAAACAACATGAGAGAGAGATGAAGAAGCCTCGCAACGGTTCCCTACATATCAAAATCCAAAGCAACAACAACTCTGACACCAAGGACAGAGGAGACAAAAACAACAAGAGCAGCAACCACTACAACAACAATAAAGGGAAGAGCTTCTATGAGCTCTCTCTGTCTTTGATCTTCTCTCTCTGGTGTCTTGTTGTCCTGTTCTACTCTAAGCTTGGTCTTGGCCATGGCAATGGAGGGAATATTTCAGGTCCGAGTAACAGAACTACACATTGTCCTGGTGTTCACAATGGTAAGCATGCATATTCATTTGTGGCAAATGGAGGCGAAAATAAGACAAATGGGATGCTTTTAGATTATAATTCGTCTGAAAGTTGTAATGGTACTGCTGTTGGTCACAACTTGCCAGTTTCGAAGTACTCACTGCCAGAGACAAATGGATTAGAAAAGATAGTTTGGAGAGTTTTGGGTTATAGCAGTTTGGTCTGTGAACTCAACCAAGAACAAGAAGAGCATAACAGAAACTGTCCAGGACAATGTGTGAATAGAACTTCTCACTCTACCTATCTCAATCTTGATGAATTTCGAAACGTAACAAAGCAAGAGAAAGACCGTGTAATGCCTAGTCAGCTTGTTAACATTACCCATGGGTTCGAACCTGATGGAACGGAGTACAACTATGCCTCGGAATCCAAGGGGGCAAAGGTGGTGTCTCACAACAAGGAAGCAAAAGGAGCAAGCAACATATTAGGCAAGGATCACGATAAATACCTCAGAAACCCTTGTTCCGTAGAGGGAAAGTTTGTTATAATTGAGCTCGCAGAGGAGACTCTGGTAGATGCTGTCAAAATTGCAAATTTTGAGCACTACTCTTCTAATTTCAAGGAATTTAAATTGTCTGGCAGTTTTAGCTATCCAACAGAAGCATGGTCACCGCTGGGTAGCTTTGTTGCTGCTAATAGTAAGCATGCTCAAACCTTTAAGCTTCCTGAACCCAAATGGGTGAGATACCTAAAGTTGGATTTACTAAGCCACTACGGAGCAGAGTTTTACTGCACACTTAGTGTTCTAGAGGTGTATGGTATTAATGCAATCAAAAGAATGCTTGAAGATCTGATTGTGGAGTCTGCAGAATCTGCAACCAACAAGTTGCCAGAGCCTAATGCAACTGTAATATCTTCTACAAAAGAAGAGGTTGGTCCAACTGACCGGAAAACAAGCAGCGATAGTCAAAATGGGATTGGTGCAGCTGTAGGGATACAAAGCACTGAAGAAGCGCAACGAGCCAATTCAGATGCTTCCAAGAATTCAGTAACTACTAACAAGATTCCTGATCCGGTTATGACAGTTCGGCAGCAGCCAAATGGAAGAATTCCTGGTGATTCTGTTCTGAAGATTTTGATGCAGAAGGTGCGGTCACTTGAGCTGAACTTGTCCGTGCTGGAGGAGTTTATCAAAGAATTGAACAGAAGACAAGGCGATGTTTTGCCAGAGCTTGGTAAAGAGATATTAAGAATATCATTGCTGTTGGAGCAAAGCAAAATGGAGATTAAAGATCTCATGCAATGGAAGGAAACTATGGAAAAACAAATGAGTGACCTTGAACTATGGAAAGCTGCTGTCTCGTCTCAATTGAATGCATTGGTCAGGGAAAATAACTTGTTGAGATTAGATTTCGAAAAGGTTGTAAATGATCAAGCCAGTCTCGAAAGCAAAGAGCTTGCTATTTTAGCAGTTAGTCTTTTCTTTTTGTGCTTCGCGATCCTCCAGCTAGTTTCATTTCAAATTTTGACATTTTTCAGAACCTCTCAGCCTGACAACGGATGCAGGAAAAGTAGAGGTTGGGTTTTAGTCATTGTTAGCAGCAGTATGACAATATTCATAACTTTGATATATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010020 GO:0010154 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0042170 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

1556

Amino Acids

174.38

Weight (kDa)

7.39

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	464 - 604	3.5e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	627 - 670	2.2e-07	AAA+ lid domain
Peptidase_M41	PF01434	699 - 799	9.6e-12	Peptidase family M41
Sad1_UNC	PF07738	1162 - 1284	3.1e-33	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23940
fragaria_vesca	FvH4_5g04870 FvH4_5g04870
malus_domestica	MD06G1109500.v1.1 MD14G1130500.v1.1
prunus_persica	Prupe.5G122500_v2.0.a1
pyrus_communis	pycom06g10310
rosa_chinensis	RchiOBHm_Chr7g0194221
rosa_laevigata	RLG00000004209
rosa_multiflora	Rmu_co8268851.1_g000001 Rmu_sc0000901.1_g000001 Rmu_sc0009433.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261490
rosa_rugosa	Rorug07G0014400
rosa_samantha	Rh7AG141800 Rh7BG142200 Rh7CG145900 Rh7DG143200
rosa_wichuraiana	Rw7G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3129, 3578
AarI	CACCTGC	1 cut(s)	2130
AasI	GACNNNNNNGTC	1 cut(s)	2079
Acc36I	ACCTGC	1 cut(s)	2130
AccB7I	CCANNNNNTGG	2 cut(s)	1327, 4265
AccBSI	CCGCTC	1 cut(s)	369
AccII	CGCG	1 cut(s)	4529
AciI	CCGC	5 cut(s)	369, 2605, 2664, 3704, 4183
AclWI	GGATC	6 cut(s)	646, 1270, 1489, 3534, 4097, 4525
AcoI	YGGCCR	3 cut(s)	2185, 2249, 2992
AcuI	CTGAAG	8 cut(s)	377, 1180, 2115, 2255, 2319, 2577, 4059, 4181
AcyI	GRCGYC	2 cut(s)	812, 1606
AdeI	CACNNNGTG	1 cut(s)	3833
AfaI	GTAC	8 cut(s)	242, 443, 797, 1337, 2489, 3154, 3188, 3443
AflII	CTTAAG	1 cut(s)	2600
AflIII	ACRYGT	1 cut(s)	2235
AjiI	CACGTC	2 cut(s)	771, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	1488, 1520
Alw21I	GWGCWC	3 cut(s)	2928, 3588, 3636
Alw26I	GTCTC	9 cut(s)	1001, 1105, 2859, 3194, 3486, 3590, 4396, 4401, 4478
AlwI	GGATC	6 cut(s)	646, 1270, 1489, 3534, 4097, 4525
AlwNI	CAGNNNCTG	5 cut(s)	1484, 1880, 2194, 3294, 3905
AoxI	GGCC	6 cut(s)	959, 2185, 2249, 2458, 2500, 2992
ArsI	GACNNNNNNTTYG	2 cut(s)	3464, 3496
AseI	ATTAAT	1 cut(s)	3855
Asp700I	GAANNNNTTC	1 cut(s)	2915
AspLEI	GCGC	1 cut(s)	4048
AsuC2I	CCSGG	2 cut(s)	1447, 1751
AsuII	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
AsuNHI	GCTAGC	1 cut(s)	170
AxyI	CCTNAGG	1 cut(s)	183
BaeI	ACNNNNGTAYC	4 cut(s)	779, 812, 3144, 3177
BalI	TGGCCA	2 cut(s)	2187, 2994
BanII	GRGCYC	2 cut(s)	2928, 3588
BauI	CACGAG	2 cut(s)	1251, 2181
BbsI	GAAGAC	4 cut(s)	765, 807, 1189, 4246
Bbv12I	GWGCWC	3 cut(s)	2928, 3588, 3636
BccI	CCATC	7 cut(s)	829, 1046, 1253, 1570, 1694, 1911, 3425
BceAI	ACGGC	2 cut(s)	958, 2064
BciVI	GTATCC	2 cut(s)	2706, 4020
BclI	TGATCA	2 cut(s)	2536, 4462
BcnI	CCSGG	2 cut(s)	1447, 1751
BcoDI	GTCTC	9 cut(s)	1001, 1105, 2859, 3194, 3486, 3590, 4396, 4401, 4478
BfaI	CTAG	7 cut(s)	71, 171, 1760, 3393, 3839, 4541, 4669
BfmI	CTRYAG	5 cut(s)	876, 906, 963, 3897, 4020
BfrI	CTTAAG	1 cut(s)	2600
BfuAI	ACCTGC	1 cut(s)	2130
BfuI	GTATCC	2 cut(s)	2706, 4020
BglI	GCCNNNNNGGC	1 cut(s)	1451
BglII	AGATCT	3 cut(s)	1531, 3880, 4324
BmcAI	AGTACT	2 cut(s)	1337, 3188
BmgBI	CACGTC	2 cut(s)	771, 1288
BmiI	GGNNCC	7 cut(s)	481, 609, 622, 741, 1208, 1404, 2812
BmtI	GCTAGC	1 cut(s)	174
BoxI	GACNNNNGTC	2 cut(s)	203, 1151
BpiI	GAAGAC	4 cut(s)	765, 807, 1189, 4246
BplI	GAGNNNNNCTC	2 cut(s)	3623, 3655
BpmI	CTGGAG	4 cut(s)	1290, 1304, 4232, 4520
Bpu10I	CCTNAGC	2 cut(s)	465, 2126
Bpu14I	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
BpuEI	CTTGAG	4 cut(s)	1133, 1162, 1641, 4211
BpuMI	CCSGG	2 cut(s)	1447, 1751
Bsa29I	ATCGAT	1 cut(s)	2055
BsaHI	GRCGYC	2 cut(s)	812, 1606
BsaI	GGTCTC	1 cut(s)	1001
BsaWI	WCCGGW	4 cut(s)	161, 805, 3978, 4105
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	7 cut(s)	924, 1273, 1717, 2472, 2516, 3176, 4470
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	4 cut(s)	696, 3007, 4289, 4340
BseCI	ATCGAT	1 cut(s)	2055
BseGI	GGATG	9 cut(s)	5, 193, 706, 802, 1418, 1922, 2014, 3120, 4598
BseMI	GCAATG	4 cut(s)	696, 3007, 4289, 4340
BseMII	CTCAG	5 cut(s)	174, 456, 1476, 3556, 4592
BseNI	ACTGG	7 cut(s)	924, 1273, 1717, 2472, 2516, 3176, 4470
BseRI	GAGGAG	5 cut(s)	422, 1371, 2877, 3608, 4229
BseYI	CCCAGC	1 cut(s)	3706
BsgI	GTGCAG	4 cut(s)	1752, 1941, 3808, 4035
Bsh1236I	CGCG	1 cut(s)	4529
BshFI	GGCC	6 cut(s)	961, 2187, 2251, 2460, 2502, 2994
BshVI	ATCGAT	1 cut(s)	2055
BsiHKAI	GWGCWC	3 cut(s)	2928, 3588, 3636
BsiSI	CCGG	9 cut(s)	133, 162, 491, 806, 1446, 1629, 1750, 3979, 4106
BslFI	GGGAC	3 cut(s)	1220, 2085, 2333
BsmAI	GTCTC	9 cut(s)	1001, 1105, 2859, 3194, 3486, 3590, 4396, 4401, 4478
BsmBI	CGTCTC	1 cut(s)	4401
BsmFI	GGGAC	3 cut(s)	1220, 2085, 2333
BsmI	GAATGC	3 cut(s)	2146, 3876, 4411
BsnI	GGCC	6 cut(s)	961, 2187, 2251, 2460, 2502, 2994
Bso31I	GGTCTC	1 cut(s)	1001
Bsp119I	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
Bsp1286I	GDGCHC	3 cut(s)	2928, 3588, 3636
Bsp19I	CCATGG	2 cut(s)	2995, 3415
Bsp68I	TCGCGA	1 cut(s)	4529
BspACI	CCGC	5 cut(s)	369, 2605, 2664, 3704, 4183
BspANI	GGCC	6 cut(s)	961, 2187, 2251, 2460, 2502, 2994
BspCNI	CTCAG	5 cut(s)	175, 457, 1477, 3555, 4591
BspDI	ATCGAT	1 cut(s)	2055
BspFNI	CGCG	1 cut(s)	4529
BspHI	TCATGA	1 cut(s)	2757
BspLI	GGNNCC	7 cut(s)	481, 609, 622, 741, 1208, 1404, 2812
BspMAI	CTGCAG	3 cut(s)	880, 910, 3901
BspMI	ACCTGC	1 cut(s)	2130
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	6 cut(s)	646, 1270, 1489, 3534, 4097, 4525
BspQI	GCTCTTC	4 cut(s)	659, 2553, 2906, 3273
BspT104I	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
BspTI	CTTAAG	1 cut(s)	2600
BspTNI	GGTCTC	1 cut(s)	1001
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	4 cut(s)	696, 3007, 4289, 4340
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	7 cut(s)	924, 1273, 1717, 2472, 2516, 3176, 4470
BssAI	RCCGGY	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	812, 1606
BssSI	CACGAG	2 cut(s)	1251, 2181
BssT1I	CCWWGG	7 cut(s)	1425, 1548, 2432, 2853, 2995, 3415, 3462
Bst2BI	CACGAG	2 cut(s)	1251, 2181
Bst6I	CTCTTC	9 cut(s)	506, 659, 2295, 2553, 2763, 2906, 3273, 3646, 3954
BstACI	GRCGYC	2 cut(s)	812, 1606
BstAFI	CTTAAG	1 cut(s)	2600
BstAPI	GCANNNNNTGC	4 cut(s)	914, 1964, 3905, 4180
BstBI	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
BstDSI	CCRYGG	2 cut(s)	2995, 3415
BstEII	GGTNACC	1 cut(s)	3699
BstF5I	GGATG	9 cut(s)	5, 193, 706, 802, 1418, 1922, 2014, 3120, 4598
BstFNI	CGCG	1 cut(s)	4529
BstHHI	GCGC	1 cut(s)	4048
BstMAI	GTCTC	9 cut(s)	1001, 1105, 2859, 3194, 3486, 3590, 4396, 4401, 4478
BstNSI	RCATGY	4 cut(s)	2239, 2578, 3071, 3740
BstPAI	GACNNNNGTC	2 cut(s)	203, 1151
BstPI	GGTNACC	1 cut(s)	3699
BstSFI	CTRYAG	5 cut(s)	876, 906, 963, 3897, 4020
BstUI	CGCG	1 cut(s)	4529
BstV2I	GAAGAC	4 cut(s)	765, 807, 1189, 4246
BstX2I	RGATCY	5 cut(s)	651, 1481, 1531, 3880, 4324
BstXI	CCANNNNNNTGG	2 cut(s)	2433, 3002
BstYI	RGATCY	5 cut(s)	651, 1481, 1531, 3880, 4324
Bsu15I	ATCGAT	1 cut(s)	2055
Bsu36I	CCTNAGG	1 cut(s)	183
BsuI	GTATCC	2 cut(s)	2706, 4020
BsuRI	GGCC	6 cut(s)	961, 2187, 2251, 2460, 2502, 2994
BsuTUI	ATCGAT	1 cut(s)	2055
BtgI	CCRYGG	2 cut(s)	2995, 3415
BtgZI	GCGATG	2 cut(s)	2249, 4263
BtrI	CACGTC	2 cut(s)	771, 1288
BtsCI	GGATG	9 cut(s)	5, 193, 706, 802, 1418, 1922, 2014, 3120, 4598
BtsI	GCAGTG	1 cut(s)	3191
BtsIMutI	CAGTG	5 cut(s)	1054, 2192, 2523, 3191, 4035
BtuMI	TCGCGA	1 cut(s)	4529
BveI	ACCTGC	1 cut(s)	2130
CaiI	CAGNNNCTG	5 cut(s)	1484, 1880, 2194, 3294, 3905
CciI	TCATGA	1 cut(s)	2757
CfoI	GCGC	1 cut(s)	4048
Cfr10I	RCCGGY	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	2055
CpoI	CGGWCCG	1 cut(s)	159
CseI	GACGC	4 cut(s)	176, 801, 1595, 2234
Csp6I	GTAC	8 cut(s)	241, 442, 796, 1336, 2488, 3153, 3187, 3442
CspCI	CAANNNNNGTGG	2 cut(s)	2241, 2276
CspI	CGGWCCG	1 cut(s)	159
CviQI	GTAC	8 cut(s)	241, 442, 796, 1336, 2488, 3153, 3187, 3442
DraI	TTTAAA	2 cut(s)	1845, 3661
DraIII	CACNNNGTG	1 cut(s)	3833
DrdI	GACNNNNNNGTC	1 cut(s)	2079
DseDI	GACNNNNNNGTC	1 cut(s)	2079
EaeI	YGGCCR	3 cut(s)	2185, 2249, 2992
Eam1104I	CTCTTC	9 cut(s)	506, 659, 2295, 2553, 2763, 2906, 3273, 3646, 3954
EarI	CTCTTC	9 cut(s)	506, 659, 2295, 2553, 2763, 2906, 3273, 3646, 3954
Ecl136II	GAGCTC	2 cut(s)	2926, 3586
Eco130I	CCWWGG	7 cut(s)	1425, 1548, 2432, 2853, 2995, 3415, 3462
Eco24I	GRGCYC	2 cut(s)	2928, 3588
Eco31I	GGTCTC	1 cut(s)	1001
Eco53kI	GAGCTC	2 cut(s)	2926, 3586
Eco57I	CTGAAG	8 cut(s)	377, 1180, 2115, 2255, 2319, 2577, 4059, 4181
Eco81I	CCTNAGG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	3699
EcoICRI	GAGCTC	2 cut(s)	2926, 3586
EcoO109I	RGGNCCY	2 cut(s)	608, 1207
EcoO65I	GGTNACC	1 cut(s)	3699
EcoRI	GAATTC	3 cut(s)	105, 4075, 4140
EcoT14I	CCWWGG	7 cut(s)	1425, 1548, 2432, 2853, 2995, 3415, 3462
EcoT22I	ATGCAT	5 cut(s)	1594, 1903, 2359, 3073, 4411
EcoT38I	GRGCYC	2 cut(s)	2928, 3588
ErhI	CCWWGG	7 cut(s)	1425, 1548, 2432, 2853, 2995, 3415, 3462
Esp3I	CGTCTC	1 cut(s)	4401
FalI	AAGNNNNNCTT	4 cut(s)	524, 556, 566, 598
FaqI	GGGAC	3 cut(s)	1220, 2085, 2333
FbaI	TGATCA	2 cut(s)	2536, 4462
FokI	GGATG	8 cut(s)	200, 713, 789, 1425, 1929, 2021, 3127, 4605
FriOI	GRGCYC	2 cut(s)	2928, 3588
FspBI	CTAG	7 cut(s)	71, 171, 1760, 3393, 3839, 4541, 4669
GlaI	GCGC	1 cut(s)	4047
GsaI	CCCAGC	1 cut(s)	3710
GsuI	CTGGAG	4 cut(s)	1290, 1304, 4232, 4520
HaeIII	GGCC	6 cut(s)	961, 2187, 2251, 2460, 2502, 2994
HapII	CCGG	9 cut(s)	133, 162, 491, 806, 1446, 1629, 1750, 3979, 4106
HgaI	GACGC	4 cut(s)	176, 801, 1595, 2234
HhaI	GCGC	1 cut(s)	4048
Hin1I	GRCGYC	2 cut(s)	812, 1606
Hin6I	GCGC	1 cut(s)	4046
HinP1I	GCGC	1 cut(s)	4046
HincII	GTYRAC	5 cut(s)	580, 588, 942, 2341, 3406
HindII	GTYRAC	5 cut(s)	580, 588, 942, 2341, 3406
HindIII	AAGCTT	4 cut(s)	784, 2717, 2981, 3752
HpaI	GTTAAC	1 cut(s)	3406
HpaII	CCGG	9 cut(s)	133, 162, 491, 806, 1446, 1629, 1750, 3979, 4106
Hpy99I	CGWCG	3 cut(s)	1289, 2085, 2250
HpyAV	CCTTC	9 cut(s)	205, 265, 621, 640, 1166, 1969, 2279, 4171, 4333
HpyCH4IV	ACGT	4 cut(s)	770, 1287, 1777, 3360
HpySE526I	ACGT	4 cut(s)	770, 1287, 1777, 3360
Hsp92I	GRCGYC	2 cut(s)	812, 1606
HspAI	GCGC	1 cut(s)	4046
Ksp22I	TGATCA	2 cut(s)	2536, 4462
KspAI	GTTAAC	1 cut(s)	3406
LguI	GCTCTTC	4 cut(s)	659, 2553, 2906, 3273
LmnI	GCTCC	4 cut(s)	1925, 3503, 3809, 4300
MaeI	CTAG	7 cut(s)	71, 171, 1760, 3393, 3839, 4541, 4669
MaeII	ACGT	4 cut(s)	770, 1287, 1777, 3360
MbiI	CCGCTC	1 cut(s)	369
MfeI	CAATTG	3 cut(s)	1134, 2255, 4400
MflI	RGATCY	5 cut(s)	651, 1481, 1531, 3880, 4324
MhlI	GDGCHC	3 cut(s)	2928, 3588, 3636
MlsI	TGGCCA	2 cut(s)	2187, 2994
MluNI	TGGCCA	2 cut(s)	2187, 2994
MlyI	GAGTC	4 cut(s)	1281, 2162, 3592, 3902
MmeI	TCCRAC	8 cut(s)	760, 868, 2029, 2080, 3710, 3768, 3995, 4278
Mox20I	TGGCCA	2 cut(s)	2187, 2994
Mph1103I	ATGCAT	5 cut(s)	1594, 1903, 2359, 3073, 4411
MroXI	GAANNNNTTC	1 cut(s)	2915
MscI	TGGCCA	2 cut(s)	2187, 2994
MslI	CAYNNNNRTG	2 cut(s)	1411, 3000
Msp20I	TGGCCA	2 cut(s)	2187, 2994
MspA1I	CMGCKG	4 cut(s)	1942, 2664, 3706, 4019
MspCI	CTTAAG	1 cut(s)	2600
MspI	CCGG	9 cut(s)	133, 162, 491, 806, 1446, 1629, 1750, 3979, 4106
MunI	CAATTG	3 cut(s)	1134, 2255, 4400
Mva1269I	GAATGC	3 cut(s)	2146, 3876, 4411
MvnI	CGCG	1 cut(s)	4529
NciI	CCSGG	2 cut(s)	1447, 1751
NcoI	CCATGG	2 cut(s)	2995, 3415
NheI	GCTAGC	1 cut(s)	170
NlaIV	GGNNCC	7 cut(s)	481, 609, 622, 741, 1208, 1404, 2812
NmuCI	GTSAC	8 cut(s)	135, 164, 196, 251, 3164, 3699, 4185, 4364
NruI	TCGCGA	1 cut(s)	4529
NsiI	ATGCAT	5 cut(s)	1594, 1903, 2359, 3073, 4411
NspI	RCATGY	4 cut(s)	2239, 2578, 3071, 3740
NspV	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
PaeI	GCATGC	2 cut(s)	3071, 3740
PagI	TCATGA	1 cut(s)	2757
PaqCI	CACCTGC	1 cut(s)	2130
PciI	ACATGT	1 cut(s)	2235
PciSI	GCTCTTC	4 cut(s)	659, 2553, 2906, 3273
PcsI	WCGNNNNNNNCGW	1 cut(s)	1783
PctI	GAATGC	3 cut(s)	2146, 3876, 4411
PdmI	GAANNNNTTC	1 cut(s)	2915
PflFI	GACNNNGTC	1 cut(s)	2194
PflMI	CCANNNNNTGG	2 cut(s)	1327, 4265
PfoI	TCCNGGA	2 cut(s)	1320, 3298
PleI	GAGTC	4 cut(s)	1280, 2161, 3592, 3901
PpsI	GAGTC	4 cut(s)	1280, 2161, 3592, 3901
PpuMI	RGGWCCY	2 cut(s)	608, 1207
PscI	ACATGT	1 cut(s)	2235
PshAI	GACNNNNGTC	2 cut(s)	203, 1151
PshBI	ATTAAT	1 cut(s)	3855
PsiI	TTATAA	2 cut(s)	3129, 3578
Psp124BI	GAGCTC	2 cut(s)	2928, 3588
Psp5II	RGGWCCY	2 cut(s)	608, 1207
PspEI	GGTNACC	1 cut(s)	3699
PspFI	CCCAGC	1 cut(s)	3706
PspN4I	GGNNCC	7 cut(s)	481, 609, 622, 741, 1208, 1404, 2812
PspPPI	RGGWCCY	2 cut(s)	608, 1207
PstI	CTGCAG	3 cut(s)	880, 910, 3901
PstNI	CAGNNNCTG	5 cut(s)	1484, 1880, 2194, 3294, 3905
PsuI	RGATCY	5 cut(s)	651, 1481, 1531, 3880, 4324
PsyI	GACNNNGTC	1 cut(s)	2194
PvuII	CAGCTG	2 cut(s)	1942, 4019
RruI	TCGCGA	1 cut(s)	4529
RsaI	GTAC	8 cut(s)	242, 443, 797, 1337, 2489, 3154, 3188, 3443
RsaNI	GTAC	8 cut(s)	241, 442, 796, 1336, 2488, 3153, 3187, 3442
RseI	CAYNNNNRTG	2 cut(s)	1411, 3000
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SacI	GAGCTC	2 cut(s)	2928, 3588
SapI	GCTCTTC	4 cut(s)	659, 2553, 2906, 3273
ScaI	AGTACT	2 cut(s)	1337, 3188
SchI	GAGTC	4 cut(s)	1281, 2162, 3592, 3902
SduI	GDGCHC	3 cut(s)	2928, 3588, 3636
SfcI	CTRYAG	5 cut(s)	876, 906, 963, 3897, 4020
SfuI	TTCGAA	4 cut(s)	3182, 3355, 3423, 4446
SmiI	ATTTAAAT	1 cut(s)	3661
SmiMI	CAYNNNNRTG	2 cut(s)	1411, 3000
SmlI	CTYRAG	5 cut(s)	1112, 1177, 1656, 2600, 4190
SmoI	CTYRAG	5 cut(s)	1112, 1177, 1656, 2600, 4190
SphI	GCATGC	2 cut(s)	3071, 3740
SsiI	CCGC	5 cut(s)	369, 2605, 2664, 3704, 4183
SspI	AATATT	3 cut(s)	1033, 3013, 4647
SspMI	CTAG	7 cut(s)	71, 171, 1760, 3393, 3839, 4541, 4669
SstI	GAGCTC	2 cut(s)	2928, 3588
StyI	CCWWGG	7 cut(s)	1425, 1548, 2432, 2853, 2995, 3415, 3462
SwaI	ATTTAAAT	1 cut(s)	3661
TaiI	ACGT	4 cut(s)	773, 1290, 1780, 3363
TaqII	GACCGA	2 cut(s)	1986, 2053
TatI	WGTACW	4 cut(s)	441, 1335, 3186, 3441
TauI	GCSGC	1 cut(s)	2608
TscAI	CASTG	5 cut(s)	1054, 2199, 2523, 3198, 4042
TseFI	GTSAC	8 cut(s)	135, 164, 196, 251, 3164, 3699, 4185, 4364
Tsp45I	GTSAC	8 cut(s)	135, 164, 196, 251, 3164, 3699, 4185, 4364
TspGWI	ACGGA	7 cut(s)	766, 1154, 3452, 3547, 3822, 4195, 4605
TspRI	CASTG	5 cut(s)	1054, 2199, 2523, 3198, 4042
Tth111I	GACNNNGTC	1 cut(s)	2194
Van91I	CCANNNNNTGG	2 cut(s)	1327, 4265
Vha464I	CTTAAG	1 cut(s)	2600
VspI	ATTAAT	1 cut(s)	3855
XbaI	TCTAGA	1 cut(s)	3838
XceI	RCATGY	4 cut(s)	2239, 2578, 3071, 3740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3693
XmnI	GAANNNNTTC	1 cut(s)	2915
XspI	CTAG	7 cut(s)	71, 171, 1760, 3393, 3839, 4541, 4669
ZrmI	AGTACT	2 cut(s)	1337, 3188
Zsp2I	ATGCAT	5 cut(s)	1594, 1903, 2359, 3073, 4411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.