Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011834

Physical Location & Seq

Genomic Coordinates Forward (+)

55764890 .. 55770153

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2838 bp

ATGGCATCCATTGACATTCTAAACTCACCCAGGCTTTACATTCCCAAACCCCACAGCCACTTCAAATCTCTAGCTCACTCAAAGCACCTCAATTTGATTACAAGAATTCAAAAGCAGCCAGCTTTCCCTCGCCGGTCACTCACCGTCCTCTGCTCACGGTCCGGTGACGCTAGCAAAGGCCCTGAGGATGATTTTGTGACCAGGGTCTTGAAGGAGAACCCAAGCCAGATTGAACCCAGGTACTTGATTGGTGAAAAGTTTTATACTTTGCAGGAAAAAGAGAGTTTGAGCAAGAAATCCAATGTGGGTTTTGCTGAACTCTTGGCAAAGAGGTTGAATTTCAAGAAGGCAGAGCTGAAGAAACAGAGCGGTGAGGCTCAAAGTGGTAGTGGAGTGAAGAAGAATGAGGAGGCTGTGTTTTTGAATGATATTTTGAGGGAGTACAAGGGGAAGCTCTATGTGCCTGAGCAAATTTTCGGAACCGAGTTGCCGGAGGAAGATGAATTTGAGAAGAGTTTGGAGGAATTGCCCAAGATGAGCTTTGAGGATTTTCAGAAAGCTATGAAGAATGATAAGGTTGACTTGTTGACTTCTAAGGAAGTTAAGGGTGCTTCTTATGGGTCCAGGGATTTCATTGTTGATTTGAAGGAGATCCCAGGAGAGAAGAGCTTGCATAGAACCAAATGGGCAATGAGGCTGGATGAGGGTGAAGCTCTGGCTCTTTTGGAGGAGTATACAGGTCCCAGATATGTGATAGAAAGACATACCACGTCTTCCGTTGGAAGCTTACCACAGTACCCTCATCCGGTGGCGTCGTCCATATCGAGCAGAATGATGGTAGAGCTTGGAGTGGTAACAGCCTTAATGGTTGCTGCTGCAGTTGTTGTTGGAGGATTCCTGGCGTCTGCAGTATTTGCTGTTACCAGTTTCGTGTTTGTGTCAACTGTATATGTTGTGTGGCCTATAGTCAAGCCGTTTATCAGGCTTTTTCTTGGTCTTGTCTTTGGTATTTTGGAGAGAGTATGGGAAAATATGGTTGATTTTTTCAGTGATGGAGGAATTTTCTCTAAATTATATGATTTTTACACTTTTGGTGGTGTCTCTGCCAGCCTTGAGATGTTAAAGCCAATTACAATTGTCCTTTTGACTATGGTCCTTCTTGTCCGTTTCACACTCTCAAGAAGACCTAAGAACTTCAGGAAGTGGGATCTGTGGCAAGGGATTGATTTTTCACGGTCTAAAGCAGAAGCTCGTGTTGATGGATCAACTGGAGTCAAGTTTGGTGACGTGGCAGGGATTGATGAAGCAGTAGAGGAACTCCAGGAGTTGGTGAAGTACTTGAAGAACCCAGAACTGTTTGATAAAATGGGAATAAAGCCTCCTCATGGAGTTCTTCTAGAGGGCCCACCTGGATGTGGCAAGACCTTGGTTGCTAAAGCCATAGCCGGGGAGGCTGGTGTTCCATTTTACCAAATGGCAGGATCTGAGTTTGTTGAAGTTTTAGTTGGTGTTGGGTCTGCTCGTATTAGAGATCTATTCAAAAGAGCCAAGGTGAACAAACCATCAGTTATTTTCATTGATGAAATTGATGCATTGGCTACCAGGCGTCAAGGGATTTTCAAGGAATCCGGCGACCAACTGTATAATGCAGCCACTCAAGAGAGGGAAACTACACTAAACCAGCTCTTAATAGAACTTGATGGGTTTGATACTGGTAAAGGTGTTATCTTCTTAGCTGCTACAAATCGCCGGGATTTGCTAGACCCTGCACTTCTACGTCCAGGTCGTTTTGATCGCAAGATAAAGATTCGTCCTCCTGGTCCAAAGGGAAGATTGGAGATTTTAAAAATCCATGCAGGCAAAGTTAAAATGTCAGAATCTGTTGATTTGTCCAGCTATGCATTGAACTTACCTGGATGGACGGGAGCAAAGTTGGCACAGCTGGTCCAAGAGGCCGCACTTGTTGCAGTAAGGAAGGGGCATGATTCAATTTATCGGTCAGACTTGGATGATGCAGTTGATAGACTTACAGTAGGACCGAAACGGGTTGGAATCGATTTGGGTCATCAGGGACAATGCCGTCGAGCTACTACTGAAGTTGGAGTTGCATTGACTTCTCACCTGCTTAGGCAATATGAGGATGCAGAAGTTGAGTCCTGTGATCGCATTTCAATCATTCCTCGTGGCCAGACACTGTCGCAAGTTGTATTTGATCGTCTTGATGATGAAGCATACATGTTTGAGCGTCGGCCACAATTGTTGCATCGCCTTCAGGTTTTACTTGGAGGGAGGGCTGCTGAAGAGGTCCTATATGGACGGGACACATCAAGGGCATCAGTTGACTACCTTGCTGATGCATCTTGGCTTGCTCGTAAAATCTTAACTGTTTGGAATTTGGAGAATCCAATGGTCATACATGGAGAGCCACCACCTTGGAGGAAGAAGCCCAAGTTTGTCGGCCCTCGACTGGACTTTGAGGGATCATTGTACGATGACTATGGCCTGATTGAACCACCAGTGAACTTCAATTTAGATGATCAGGTTGCACAAAGGACTGAAGAGCTGGTTGAGAGCATGTATGAAAAAACGCTTTCTTTGCTTAAGCGGCATCATGCAGCCTTGCTTAAAACCGTGAAAGTTCTTCTCGAACACAAGGAAATCAGCGGTGAAGAAATTGATTTTATACTGAACAAGTATCCTCCCCAAACACCCGTGAAGCTTCTATTAGAAGAAGAAAATCCTGGTAGTCTGGACTTCATGAAACAGGAAGAGAAACGTGAGTTACAGTTTGCCCTTCCAACCCACCAAAAAGGCTCCATTTCCCTTGGAACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010020 GO:0010154 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0042170 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

945

Amino Acids

106.02

Weight (kDa)

7.04

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	464 - 604	1.8e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	627 - 670	1.2e-07	AAA+ lid domain
Peptidase_M41	PF01434	699 - 799	1.4e-11	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23940
fragaria_vesca	FvH4_5g04870 FvH4_5g04870
malus_domestica	MD06G1109500.v1.1 MD14G1130500.v1.1
prunus_persica	Prupe.5G122500_v2.0.a1
pyrus_communis	pycom06g10310
rosa_chinensis	RchiOBHm_Chr7g0194221
rosa_laevigata	RLG00000004209
rosa_multiflora	Rmu_co8268851.1_g000001 Rmu_sc0000901.1_g000001 Rmu_sc0009433.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261490
rosa_rugosa	Rorug07G0014400
rosa_samantha	Rh7AG141800 Rh7BG142200 Rh7CG145900 Rh7DG143200
rosa_wichuraiana	Rw7G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2130
AasI	GACNNNNNNGTC	1 cut(s)	2079
Acc36I	ACCTGC	1 cut(s)	2130
AccB7I	CCANNNNNTGG	1 cut(s)	1327
AccBSI	CCGCTC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	734
AciI	CCGC	4 cut(s)	369, 1956, 2605, 2664
AclWI	GGATC	5 cut(s)	646, 1215, 1270, 1489, 2488
AcoI	YGGCCR	2 cut(s)	2185, 2249
AcsI	RAATTY	6 cut(s)	105, 337, 471, 503, 1059, 2392
AcuI	CTGAAG	6 cut(s)	377, 1180, 2115, 2255, 2319, 2577
AcyI	GRCGYC	3 cut(s)	812, 902, 1606
AfaI	GTAC	5 cut(s)	242, 443, 797, 1337, 2489
AfiI	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
AflII	CTTAAG	1 cut(s)	2600
AflIII	ACRYGT	1 cut(s)	2235
AjiI	CACGTC	2 cut(s)	771, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	1488, 1520
Alw26I	GTCTC	1 cut(s)	1105
AlwI	GGATC	5 cut(s)	646, 1215, 1270, 1489, 2488
AlwNI	CAGNNNCTG	3 cut(s)	1484, 1880, 2194
AoxI	GGCC	8 cut(s)	178, 959, 1402, 1953, 2185, 2249, 2458, 2500
ApaI	GGGCCC	1 cut(s)	1406
ApeKI	GCWGC	7 cut(s)	115, 872, 875, 1649, 1736, 2294, 2615
ApoI	RAATTY	6 cut(s)	105, 337, 471, 503, 1059, 2392
AsuC2I	CCSGG	2 cut(s)	1447, 1751
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	8 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036, 2305
AxyI	CCTNAGG	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	1406
BaeI	ACNNNNGTAYC	2 cut(s)	779, 812
BalI	TGGCCA	1 cut(s)	2187
BanII	GRGCYC	1 cut(s)	1406
BauI	CACGAG	2 cut(s)	1251, 2181
BbsI	GAAGAC	2 cut(s)	765, 1189
BbvI	GCAGC	7 cut(s)	127, 859, 862, 1661, 1723, 2281, 2627
BccI	CCATC	6 cut(s)	829, 1046, 1253, 1570, 1694, 1911
BceAI	ACGGC	2 cut(s)	958, 2064
BciVI	GTATCC	1 cut(s)	2706
BclI	TGATCA	1 cut(s)	2536
BcnI	CCSGG	2 cut(s)	1447, 1751
BcoDI	GTCTC	1 cut(s)	1105
BfaI	CTAG	4 cut(s)	71, 171, 1397, 1760
BfmI	CTRYAG	3 cut(s)	876, 906, 963
BfrI	CTTAAG	1 cut(s)	2600
BfuAI	ACCTGC	1 cut(s)	2130
BfuI	GTATCC	1 cut(s)	2706
BglI	GCCNNNNNGGC	1 cut(s)	1451
BglII	AGATCT	1 cut(s)	1531
BisI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
BlsI	GCNGC	9 cut(s)	117, 874, 877, 1651, 1738, 1957, 2296, 2607, 2617
BmcAI	AGTACT	1 cut(s)	1337
Bme18I	GGWCC	8 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036, 2305
BmgBI	CACGTC	2 cut(s)	771, 1288
BmiI	GGNNCC	5 cut(s)	481, 622, 742, 1404, 2815
BmsI	GCATC	9 cut(s)	14, 1579, 2002, 2131, 2272, 2342, 2344, 2366, 2617
BmtI	GCTAGC	1 cut(s)	174
BoxI	GACNNNNGTC	2 cut(s)	203, 1151
BpiI	GAAGAC	2 cut(s)	765, 1189
BpmI	CTGGAG	2 cut(s)	1290, 1304
Bpu10I	CCTNAGC	2 cut(s)	465, 2126
BpuEI	CTTGAG	3 cut(s)	1133, 1162, 1641
BpuMI	CCSGG	2 cut(s)	1447, 1751
Bsa29I	ATCGAT	1 cut(s)	2055
BsaHI	GRCGYC	3 cut(s)	812, 902, 1606
BsaWI	WCCGGW	2 cut(s)	161, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	5 cut(s)	924, 1273, 1717, 2472, 2516
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	2055
BseGI	GGATG	8 cut(s)	5, 193, 706, 802, 1418, 1922, 2014, 2146
BseLI	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	174, 456, 1476
BseNI	ACTGG	5 cut(s)	924, 1273, 1717, 2472, 2516
BseRI	GAGGAG	3 cut(s)	422, 743, 1371
BseSI	GKGCMC	1 cut(s)	1406
BseXI	GCAGC	7 cut(s)	127, 859, 862, 1661, 1723, 2281, 2627
BsgI	GTGCAG	1 cut(s)	1752
BshFI	GGCC	8 cut(s)	180, 961, 1404, 1955, 2187, 2251, 2460, 2502
BshVI	ATCGAT	1 cut(s)	2055
BsiSI	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
BslFI	GGGAC	3 cut(s)	726, 2085, 2333
BslI	CCNNNNNNNGG	6 cut(s)	805, 1327, 1385, 1415, 1446, 2467
BsmAI	GTCTC	1 cut(s)	1105
BsmFI	GGGAC	3 cut(s)	726, 2085, 2333
BsnI	GGCC	8 cut(s)	180, 961, 1404, 1955, 2187, 2251, 2460, 2502
Bsp120I	GGGCCC	1 cut(s)	1402
Bsp1286I	GDGCHC	1 cut(s)	1406
BspACI	CCGC	4 cut(s)	369, 1956, 2605, 2664
BspANI	GGCC	8 cut(s)	180, 961, 1404, 1955, 2187, 2251, 2460, 2502
BspCNI	CTCAG	3 cut(s)	175, 457, 1477
BspDI	ATCGAT	1 cut(s)	2055
BspHI	TCATGA	1 cut(s)	2757
BspLI	GGNNCC	5 cut(s)	481, 622, 742, 1404, 2815
BspMAI	CTGCAG	2 cut(s)	880, 910
BspMI	ACCTGC	1 cut(s)	2130
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	5 cut(s)	646, 1215, 1270, 1489, 2488
BspQI	GCTCTTC	2 cut(s)	659, 2553
BspTI	CTTAAG	1 cut(s)	2600
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	5 cut(s)	924, 1273, 1717, 2472, 2516
BssAI	RCCGGY	1 cut(s)	132
BssNAI	GTATAC	1 cut(s)	735
BssNI	GRCGYC	3 cut(s)	812, 902, 1606
BssSI	CACGAG	2 cut(s)	1251, 2181
BssT1I	CCWWGG	4 cut(s)	1425, 1548, 2432, 2824
Bst1107I	GTATAC	1 cut(s)	735
Bst2BI	CACGAG	2 cut(s)	1251, 2181
Bst6I	CTCTTC	5 cut(s)	506, 659, 2295, 2553, 2763
BstACI	GRCGYC	3 cut(s)	812, 902, 1606
BstAFI	CTTAAG	1 cut(s)	2600
BstAPI	GCANNNNNTGC	2 cut(s)	914, 1964
BstC8I	GCNNGC	6 cut(s)	120, 172, 671, 1108, 1858, 2367
BstDEI	CTNAG	7 cut(s)	183, 465, 594, 1188, 1485, 1732, 2126
BstF5I	GGATG	8 cut(s)	5, 193, 706, 802, 1418, 1922, 2014, 2146
BstMAI	GTCTC	1 cut(s)	1105
BstMWI	GCNNNNNNNGC	7 cut(s)	460, 914, 1451, 1934, 1964, 2596, 2605
BstNSI	RCATGY	2 cut(s)	2239, 2578
BstPAI	GACNNNNGTC	2 cut(s)	203, 1151
BstSFI	CTRYAG	3 cut(s)	876, 906, 963
BstSLI	GKGCMC	1 cut(s)	1406
BstV1I	GCAGC	7 cut(s)	127, 859, 862, 1661, 1723, 2281, 2627
BstV2I	GAAGAC	2 cut(s)	765, 1189
BstX2I	RGATCY	4 cut(s)	651, 1207, 1481, 1531
BstXI	CCANNNNNNTGG	1 cut(s)	2433
BstYI	RGATCY	4 cut(s)	651, 1207, 1481, 1531
BstZ17I	GTATAC	1 cut(s)	735
Bsu15I	ATCGAT	1 cut(s)	2055
Bsu36I	CCTNAGG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	2706
BsuRI	GGCC	8 cut(s)	180, 961, 1404, 1955, 2187, 2251, 2460, 2502
BsuTUI	ATCGAT	1 cut(s)	2055
BtgZI	GCGATG	1 cut(s)	2249
BtrI	CACGTC	2 cut(s)	771, 1288
BtsCI	GGATG	8 cut(s)	5, 193, 706, 802, 1418, 1922, 2014, 2146
BtsIMutI	CAGTG	3 cut(s)	1054, 2192, 2523
BveI	ACCTGC	1 cut(s)	2130
Cac8I	GCNNGC	6 cut(s)	120, 172, 671, 1108, 1858, 2367
CaiI	CAGNNNCTG	3 cut(s)	1484, 1880, 2194
CciI	TCATGA	1 cut(s)	2757
Cfr10I	RCCGGY	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	2055
CpoI	CGGWCCG	1 cut(s)	159
CseI	GACGC	5 cut(s)	176, 801, 891, 1595, 2234
Csp6I	GTAC	5 cut(s)	241, 442, 796, 1336, 2488
CspCI	CAANNNNNGTGG	2 cut(s)	2241, 2276
CspI	CGGWCCG	1 cut(s)	159
CviAII	CATG	8 cut(s)	1385, 1853, 1982, 2236, 2417, 2575, 2612, 2758
CviQI	GTAC	5 cut(s)	241, 442, 796, 1336, 2488
DdeI	CTNAG	7 cut(s)	183, 465, 594, 1188, 1485, 1732, 2126
DraI	TTTAAA	1 cut(s)	1845
DrdI	GACNNNNNNGTC	1 cut(s)	2079
DseDI	GACNNNNNNGTC	1 cut(s)	2079
EaeI	YGGCCR	2 cut(s)	2185, 2249
Eam1104I	CTCTTC	5 cut(s)	506, 659, 2295, 2553, 2763
EarI	CTCTTC	5 cut(s)	506, 659, 2295, 2553, 2763
Eco130I	CCWWGG	4 cut(s)	1425, 1548, 2432, 2824
Eco24I	GRGCYC	1 cut(s)	1406
Eco47I	GGWCC	8 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036, 2305
Eco57I	CTGAAG	6 cut(s)	377, 1180, 2115, 2255, 2319, 2577
Eco81I	CCTNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	4 cut(s)	179, 740, 1402, 2305
EcoRI	GAATTC	1 cut(s)	105
EcoT14I	CCWWGG	4 cut(s)	1425, 1548, 2432, 2824
EcoT22I	ATGCAT	3 cut(s)	1594, 1903, 2359
EcoT38I	GRGCYC	1 cut(s)	1406
ErhI	CCWWGG	4 cut(s)	1425, 1548, 2432, 2824
FaeI	CATG	8 cut(s)	1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
FalI	AAGNNNNNCTT	4 cut(s)	524, 556, 566, 598
FaqI	GGGAC	3 cut(s)	726, 2085, 2333
FatI	CATG	8 cut(s)	1384, 1852, 1981, 2235, 2416, 2574, 2611, 2757
FbaI	TGATCA	1 cut(s)	2536
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
FokI	GGATG	7 cut(s)	200, 713, 789, 1425, 1929, 2021, 2153
FriOI	GRGCYC	1 cut(s)	1406
Fsp4HI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
FspBI	CTAG	4 cut(s)	71, 171, 1397, 1760
GluI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
GsuI	CTGGAG	2 cut(s)	1290, 1304
HaeIII	GGCC	8 cut(s)	180, 961, 1404, 1955, 2187, 2251, 2460, 2502
HapII	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
HgaI	GACGC	5 cut(s)	176, 801, 891, 1595, 2234
Hin1I	GRCGYC	3 cut(s)	812, 902, 1606
Hin1II	CATG	8 cut(s)	1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
HincII	GTYRAC	4 cut(s)	580, 588, 942, 2341
HindII	GTYRAC	4 cut(s)	580, 588, 942, 2341
HindIII	AAGCTT	2 cut(s)	784, 2717
HinfI	GANTC	9 cut(s)	894, 1272, 1625, 1807, 1877, 1985, 2052, 2153, 2401
HpaII	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
Hpy166II	GTNNAC	7 cut(s)	580, 588, 735, 942, 1555, 2341, 2521
Hpy188I	TCNGA	5 cut(s)	479, 555, 1486, 1876, 2002
Hpy8I	GTNNAC	7 cut(s)	580, 588, 735, 942, 1555, 2341, 2521
Hpy99I	CGWCG	3 cut(s)	817, 2085, 2250
HpyAV	CCTTC	7 cut(s)	205, 340, 640, 1166, 1969, 2279, 2804
HpyCH4IV	ACGT	4 cut(s)	770, 1287, 1777, 2776
HpyF10VI	GCNNNNNNNGC	7 cut(s)	460, 914, 1451, 1934, 1964, 2596, 2605
HpyF3I	CTNAG	7 cut(s)	183, 465, 594, 1188, 1485, 1732, 2126
HpySE526I	ACGT	4 cut(s)	770, 1287, 1777, 2776
Hsp92I	GRCGYC	3 cut(s)	812, 902, 1606
Hsp92II	CATG	8 cut(s)	1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
Ksp22I	TGATCA	1 cut(s)	2536
LguI	GCTCTTC	2 cut(s)	659, 2553
LmnI	GCTCC	2 cut(s)	1925, 2819
Lsp1109I	GCAGC	7 cut(s)	127, 859, 862, 1661, 1723, 2281, 2627
LweI	GCATC	9 cut(s)	14, 1579, 2002, 2131, 2272, 2342, 2344, 2366, 2617
MaeI	CTAG	4 cut(s)	71, 171, 1397, 1760
MaeII	ACGT	4 cut(s)	770, 1287, 1777, 2776
MaeIII	GTNAC	7 cut(s)	135, 164, 196, 853, 919, 1283, 2781
MbiI	CCGCTC	1 cut(s)	369
MfeI	CAATTG	2 cut(s)	1134, 2255
MflI	RGATCY	4 cut(s)	651, 1207, 1481, 1531
MhlI	GDGCHC	1 cut(s)	1406
MlsI	TGGCCA	1 cut(s)	2187
MluNI	TGGCCA	1 cut(s)	2187
MlyI	GAGTC	2 cut(s)	1281, 2162
MmeI	TCCRAC	5 cut(s)	760, 868, 2029, 2080, 2822
Mox20I	TGGCCA	1 cut(s)	2187
Mph1103I	ATGCAT	3 cut(s)	1594, 1903, 2359
MscI	TGGCCA	1 cut(s)	2187
MseI	TTAA	9 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2381, 2601, 2625
MslI	CAYNNNNRTG	1 cut(s)	1411
Msp20I	TGGCCA	1 cut(s)	2187
MspA1I	CMGCKG	2 cut(s)	1942, 2664
MspCI	CTTAAG	1 cut(s)	2600
MspI	CCGG	7 cut(s)	133, 162, 491, 806, 1446, 1629, 1750
MunI	CAATTG	2 cut(s)	1134, 2255
MwoI	GCNNNNNNNGC	7 cut(s)	460, 914, 1451, 1934, 1964, 2596, 2605
NciI	CCSGG	2 cut(s)	1447, 1751
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	8 cut(s)	1388, 1856, 1985, 2239, 2420, 2578, 2615, 2761
NlaIV	GGNNCC	5 cut(s)	481, 622, 742, 1404, 2815
NmuCI	GTSAC	4 cut(s)	135, 164, 196, 1283
NsiI	ATGCAT	3 cut(s)	1594, 1903, 2359
NspI	RCATGY	2 cut(s)	2239, 2578
PagI	TCATGA	1 cut(s)	2757
PaqCI	CACCTGC	1 cut(s)	2130
PciI	ACATGT	1 cut(s)	2235
PciSI	GCTCTTC	2 cut(s)	659, 2553
PcsI	WCGNNNNNNNCGW	2 cut(s)	821, 1783
PfeI	GAWTC	7 cut(s)	894, 1625, 1807, 1877, 1985, 2052, 2401
PflFI	GACNNNGTC	1 cut(s)	2194
PflMI	CCANNNNNTGG	1 cut(s)	1327
PfoI	TCCNGGA	1 cut(s)	1320
PkrI	GCNGC	9 cut(s)	117, 874, 877, 1651, 1738, 1957, 2296, 2607, 2617
PleI	GAGTC	2 cut(s)	1280, 2161
PpsI	GAGTC	2 cut(s)	1280, 2161
PpuMI	RGGWCCY	2 cut(s)	740, 2305
PscI	ACATGT	1 cut(s)	2235
PshAI	GACNNNNGTC	2 cut(s)	203, 1151
Psp5II	RGGWCCY	2 cut(s)	740, 2305
PspN4I	GGNNCC	5 cut(s)	481, 622, 742, 1404, 2815
PspOMI	GGGCCC	1 cut(s)	1402
PspPPI	RGGWCCY	2 cut(s)	740, 2305
PstI	CTGCAG	2 cut(s)	880, 910
PstNI	CAGNNNCTG	3 cut(s)	1484, 1880, 2194
PsuI	RGATCY	4 cut(s)	651, 1207, 1481, 1531
PsyI	GACNNNGTC	1 cut(s)	2194
PvuII	CAGCTG	1 cut(s)	1942
RsaI	GTAC	5 cut(s)	242, 443, 797, 1337, 2489
RsaNI	GTAC	5 cut(s)	241, 442, 796, 1336, 2488
RseI	CAYNNNNRTG	1 cut(s)	1411
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	659, 2553
SaqAI	TTAA	9 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2381, 2601, 2625
SatI	GCNGC	9 cut(s)	116, 873, 876, 1650, 1737, 1956, 2295, 2606, 2616
ScaI	AGTACT	1 cut(s)	1337
SchI	GAGTC	2 cut(s)	1281, 2162
SduI	GDGCHC	1 cut(s)	1406
SfaNI	GCATC	9 cut(s)	14, 1579, 2002, 2131, 2272, 2342, 2344, 2366, 2617
SfcI	CTRYAG	3 cut(s)	876, 906, 963
SinI	GGWCC	8 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036, 2305
SmiMI	CAYNNNNRTG	1 cut(s)	1411
SmlI	CTYRAG	4 cut(s)	1112, 1177, 1656, 2600
SmoI	CTYRAG	4 cut(s)	1112, 1177, 1656, 2600
SsiI	CCGC	4 cut(s)	369, 1956, 2605, 2664
SspMI	CTAG	4 cut(s)	71, 171, 1397, 1760
StyI	CCWWGG	4 cut(s)	1425, 1548, 2432, 2824
TaiI	ACGT	4 cut(s)	773, 1290, 1780, 2779
TaqI	TCGA	5 cut(s)	824, 2055, 2083, 2464, 2646
TaqII	GACCGA	2 cut(s)	1986, 2053
TatI	WGTACW	2 cut(s)	441, 1335
TauI	GCSGC	2 cut(s)	1958, 2608
TfiI	GAWTC	7 cut(s)	894, 1625, 1807, 1877, 1985, 2052, 2401
Tru1I	TTAA	9 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2381, 2601, 2625
Tru9I	TTAA	9 cut(s)	603, 863, 1121, 1688, 1844, 1866, 2381, 2601, 2625
TscAI	CASTG	3 cut(s)	1054, 2199, 2523
TseFI	GTSAC	4 cut(s)	135, 164, 196, 1283
TseI	GCWGC	7 cut(s)	115, 872, 875, 1649, 1736, 2294, 2615
Tsp45I	GTSAC	4 cut(s)	135, 164, 196, 1283
TspGWI	ACGGA	2 cut(s)	766, 1154
TspRI	CASTG	3 cut(s)	1054, 2199, 2523
Tth111I	GACNNNGTC	1 cut(s)	2194
Van91I	CCANNNNNTGG	1 cut(s)	1327
Vha464I	CTTAAG	1 cut(s)	2600
VpaK11BI	GGWCC	8 cut(s)	159, 621, 740, 1153, 1820, 1945, 2036, 2305
XapI	RAATTY	6 cut(s)	105, 337, 471, 503, 1059, 2392
XbaI	TCTAGA	1 cut(s)	1396
XceI	RCATGY	2 cut(s)	2239, 2578
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	4 cut(s)	71, 171, 1397, 1760
ZrmI	AGTACT	1 cut(s)	1337
Zsp2I	ATGCAT	3 cut(s)	1594, 1903, 2359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.