Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8268851.1

Orthogroup ID

OG0011834

Physical Location & Seq

Genomic Coordinates Reverse (-)

105 .. 824

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8268851.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

ggtcttgaaggagaacccaagccagattgaacccaggtacttgattggtgaaaagttttatactttgaaggaaaaagagagtttgagcaagaaatccaatgtgggttttgctgaactcttggcaaagaggttgaatttcaacaaggcagagctgaagaaacagagcggtgaggctcaaagtggtagtggagtgaagaagaatgaggaggctgtgtttttgaatgatattttgagggagtacaaggggaagctctatgtgcctgagcaaattttcggaaccgagttgccggaggaagatgaatttgagaagagtttggaggaattgcccaagatgagctttgaggattttcagaaagctatgaagaatgataaggttgacttgttgacttctaaggaagttaagggtgcttcttatgggtccagggatttcattgttgatttgaaggagatcccaggcgagaagagcttgcatagaaccaaatgggcaatgaggctggatgagggtgaagctcttgctcttttggaggattatacgggtccaagatatgtgatagaaagacataccacggtgatcaactctttgaactcttctgagcttagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010020 GO:0010154 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0042170 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

200

Amino Acids

22.86

Weight (kDa)

5.37

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23940
fragaria_vesca	FvH4_5g04870 FvH4_5g04870
malus_domestica	MD06G1109500.v1.1 MD14G1130500.v1.1
prunus_persica	Prupe.5G122500_v2.0.a1
pyrus_communis	pycom06g10310
rosa_chinensis	RchiOBHm_Chr7g0194221
rosa_laevigata	RLG00000004209
rosa_multiflora	Rmu_co8268851.1_g000001 Rmu_sc0000901.1_g000001 Rmu_sc0009433.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261490
rosa_rugosa	Rorug07G0014400
rosa_samantha	Rh7AG141800 Rh7BG142200 Rh7CG145900 Rh7DG143200
rosa_wichuraiana	Rw7G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	3 cut(s)	134, 268, 300
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	2 cut(s)	39, 240
AgsI	TTSAA	8 cut(s)	8, 30, 68, 134, 140, 221, 443, 584
AjnI	CCWGG	3 cut(s)	33, 420, 452
AluBI	AGCT	7 cut(s)	152, 251, 337, 357, 466, 510, 596
AluI	AGCT	7 cut(s)	152, 251, 337, 357, 466, 510, 596
AlwI	GGATC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	134, 268, 300
AspS9I	GGNCC	2 cut(s)	418, 537
AsuHPI	GGTGA	4 cut(s)	60, 180, 516, 581
AvaII	GGWCC	2 cut(s)	418, 537
BciT130I	CCWGG	3 cut(s)	35, 422, 454
BclI	TGATCA	1 cut(s)	571
Bme1390I	CCNGG	3 cut(s)	35, 422, 454
Bme18I	GGWCC	2 cut(s)	418, 537
BmgT120I	GGNCC	2 cut(s)	418, 537
BmiI	GGNNCC	3 cut(s)	278, 419, 538
BmrFI	CCNGG	3 cut(s)	35, 422, 454
Bpu10I	CCTNAGC	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	33, 421, 452, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	3 cut(s)	35, 422, 454
BseDI	CCNNGG	4 cut(s)	33, 421, 452, 565
BseGI	GGATG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	253, 583
BseRI	GAGGAG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	448, 571
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	254, 584
BspLI	GGNNCC	3 cut(s)	278, 419, 538
BspPI	GGATC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	493
BssECI	CCNNGG	4 cut(s)	33, 421, 452, 565
BssMI	GATC	2 cut(s)	448, 571
Bst2UI	CCWGG	3 cut(s)	35, 422, 454
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	3 cut(s)	303, 456, 593
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	262, 391, 592, 597
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	1 cut(s)	503
BstKTI	GATC	2 cut(s)	451, 574
BstMBI	GATC	2 cut(s)	448, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 463
BstNI	CCWGG	3 cut(s)	35, 422, 454
BstSCI	CCNGG	3 cut(s)	33, 420, 452
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	418, 537
Csp6I	GTAC	2 cut(s)	38, 239
CviQI	GTAC	2 cut(s)	38, 239
DdeI	CTNAG	4 cut(s)	262, 391, 592, 597
DpnI	GATC	2 cut(s)	450, 573
DpnII	GATC	2 cut(s)	448, 571
Eam1104I	CTCTTC	3 cut(s)	303, 456, 593
EarI	CTCTTC	3 cut(s)	303, 456, 593
Eco47I	GGWCC	2 cut(s)	418, 537
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	3 cut(s)	33, 420, 452
FaiI	YATR	8 cut(s)	61, 256, 360, 415, 472, 532, 547, 562
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 363, 395
FbaI	TGATCA	1 cut(s)	571
FokI	GGATG	1 cut(s)	510
HapII	CCGG	1 cut(s)	288
HincII	GTYRAC	2 cut(s)	377, 385
HindII	GTYRAC	2 cut(s)	377, 385
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	4 cut(s)	60, 180, 516, 581
Hpy166II	GTNNAC	2 cut(s)	377, 385
Hpy188I	TCNGA	3 cut(s)	276, 352, 593
Hpy188III	TCNNGA	1 cut(s)	5
Hpy8I	GTNNAC	2 cut(s)	377, 385
HpyAV	CCTTC	2 cut(s)	62, 437
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 463
HpyF3I	CTNAG	4 cut(s)	262, 391, 592, 597
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	448, 571
LguI	GCTCTTC	1 cut(s)	456
MalI	GATC	2 cut(s)	450, 573
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	2 cut(s)	448, 571
MboII	GAAGA	8 cut(s)	167, 206, 209, 306, 320, 374, 473, 580
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	4 cut(s)	134, 268, 300, 321
MseI	TTAA	2 cut(s)	400, 602
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	3 cut(s)	35, 422, 454
MvaI	CCWGG	3 cut(s)	35, 422, 454
MwoI	GCNNNNNNNGC	2 cut(s)	257, 463
NdeII	GATC	2 cut(s)	448, 571
NlaIV	GGNNCC	3 cut(s)	278, 419, 538
PciSI	GCTCTTC	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	33, 420, 452
PspGI	CCWGG	3 cut(s)	33, 420, 452
PspN4I	GGNNCC	3 cut(s)	278, 419, 538
PspPI	GGNCC	2 cut(s)	418, 537
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	2 cut(s)	39, 240
RsaNI	GTAC	2 cut(s)	38, 239
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	400, 602
Sau3AI	GATC	2 cut(s)	448, 571
Sau96I	GGNCC	2 cut(s)	418, 537
ScrFI	CCNGG	3 cut(s)	35, 422, 454
SinI	GGWCC	2 cut(s)	418, 537
Sse9I	AATT	4 cut(s)	134, 268, 300, 321
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	3 cut(s)	33, 420, 452
TaaI	ACNGT	1 cut(s)	569
TasI	AATT	4 cut(s)	134, 268, 300, 321
TatI	WGTACW	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	400, 602
Tru9I	TTAA	2 cut(s)	400, 602
TspDTI	ATGAA	3 cut(s)	313, 375, 419
VpaK11BI	GGWCC	2 cut(s)	418, 537
XapI	RAATTY	3 cut(s)	134, 268, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.