Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Forward (+)

62053415 .. 62053974

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGGAGGCGCCGATCGAGTGGTTCTGCGTCGCCGGAGAAGGCGCCGATGAAAACCGAAACAGAGGAGGTGTTTTCCGGGTCACCGATGAGGCCTCGACGGCGGAGGTCACCTGTTCGTTTGGCCGGACCCAGGTCAGGAAGGCTGAGAATGAGCTTCCGGTGAGCGATGTGGTGGATGTAATGAGCGACGACGAGCCTAGAAACAATGTGGCGGAGTCAAAGGTCACCGAAGACGAATTGAAGAACGGTGTTGTGGAGATGGTTATGGATAATGAGCAAAACGTTAGGTCTGTTGGTAACGAAGATGAGGCAGTAGACACATTATTGGCCCCCAGTAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

116

Amino Acids

12.65

Weight (kDa)

4.15

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 44
AccI	GTMKAC	2 cut(s)	318, 340
AciI	CCGC	2 cut(s)	104, 215
AclI	AACGTT	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	124
AcyI	GRCGYC	2 cut(s)	11, 45
AfiI	CCNNNNNNNGG	2 cut(s)	133, 138
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AoxI	GGCC	3 cut(s)	93, 124, 330
AspLEI	GCGC	2 cut(s)	13, 47
AspS9I	GGNCC	2 cut(s)	129, 331
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	4 cut(s)	76, 103, 175, 220
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	2 cut(s)	10, 44
BbsI	GAAGAC	1 cut(s)	240
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	14, 48
BglI	GCCNNNNNGGC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	80, 134
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 331
BmiI	GGNNCC	4 cut(s)	12, 46, 131, 333
BmrFI	CCNGG	2 cut(s)	80, 134
BmrI	ACTGGG	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	330
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	11, 45
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 138
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	133, 138
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	20, 81
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	95, 126, 332
BshNI	GGYRCC	2 cut(s)	10, 44
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	4 cut(s)	36, 79, 127, 161
BslI	CCNNNNNNNGG	2 cut(s)	133, 138
BsnI	GGCC	3 cut(s)	95, 126, 332
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	104, 215
BspANI	GGCC	3 cut(s)	95, 126, 332
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	12, 46, 131, 333
BspT107I	GGYRCC	2 cut(s)	10, 44
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	2 cut(s)	11, 45
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	2 cut(s)	11, 45
BstDEI	CTNAG	1 cut(s)	147
BstEII	GGTNACC	3 cut(s)	82, 109, 226
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	2 cut(s)	14, 48
BstHHI	GCGC	2 cut(s)	13, 47
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	134
BstPAI	GACNNNNGTC	1 cut(s)	134
BstPI	GGTNACC	3 cut(s)	82, 109, 226
BstSCI	CCNGG	2 cut(s)	78, 132
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	95, 126, 332
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	184
CfoI	GCGC	2 cut(s)	13, 47
Cfr13I	GGNCC	2 cut(s)	129, 331
CseI	GACGC	1 cut(s)	19
CviJI	RGCY	6 cut(s)	95, 126, 146, 157, 199, 332
CviKI_1	RGCY	6 cut(s)	95, 126, 146, 157, 199, 332
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	2 cut(s)	12, 46
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	124
EciI	GGCGGA	2 cut(s)	119, 230
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	129
Eco91I	GGTNACC	3 cut(s)	82, 109, 226
EcoO65I	GGTNACC	3 cut(s)	82, 109, 226
EcoRII	CCWGG	1 cut(s)	132
EgeI	GGCGCC	2 cut(s)	12, 46
EheI	GGCGCC	2 cut(s)	12, 46
FaiI	YATR	1 cut(s)	269
FblI	GTMKAC	2 cut(s)	318, 340
FokI	GGATG	1 cut(s)	191
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	12, 46
HaeII	RGCGCY	2 cut(s)	14, 48
HaeIII	GGCC	3 cut(s)	95, 126, 332
HapII	CCGG	4 cut(s)	36, 79, 127, 161
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	13, 47
Hin1I	GRCGYC	2 cut(s)	11, 45
Hin6I	GCGC	2 cut(s)	11, 45
HinP1I	GCGC	2 cut(s)	11, 45
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	4 cut(s)	36, 79, 127, 161
HphI	GGTGA	4 cut(s)	76, 103, 175, 220
Hpy166II	GTNNAC	2 cut(s)	319, 341
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	2 cut(s)	319, 341
Hpy99I	CGWCG	4 cut(s)	35, 103, 194, 197
HpyAV	CCTTC	2 cut(s)	35, 136
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	2 cut(s)	11, 45
HspAI	GCGC	2 cut(s)	11, 45
KasI	GGCGCC	2 cut(s)	10, 44
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	8 cut(s)	49, 92, 119, 124, 127, 140, 146, 174
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	4 cut(s)	82, 109, 226, 299
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	245, 256, 317
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	2 cut(s)	11, 45
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	6 cut(s)	59, 62, 85, 100, 106, 304
MspI	CCGG	4 cut(s)	36, 79, 127, 161
MspR9I	CCNGG	2 cut(s)	80, 134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	101
NarI	GGCGCC	2 cut(s)	11, 45
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	4 cut(s)	12, 46, 131, 333
NmuCI	GTSAC	3 cut(s)	82, 109, 226
PceI	AGGCCT	1 cut(s)	95
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	1 cut(s)	226
PluTI	GGCGCC	2 cut(s)	14, 48
PpsI	GAGTC	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	3 cut(s)	82, 109, 226
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	12, 46, 131, 333
PspPI	GGNCC	2 cut(s)	129, 331
PvuI	CGATCG	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	129, 331
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	80, 134
SetI	ASST	8 cut(s)	73, 111, 116, 138, 159, 228, 288, 293
SfoI	GGCGCC	2 cut(s)	12, 46
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	104, 215
SspDI	GGCGCC	2 cut(s)	10, 44
SspMI	CTAG	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	78, 132
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	18, 98
TasI	AATT	1 cut(s)	239
TseFI	GTSAC	3 cut(s)	82, 109, 226
Tsp45I	GTSAC	3 cut(s)	82, 109, 226
TspDTI	ATGAA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	129
XmiI	GTMKAC	2 cut(s)	318, 340
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.