Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Reverse (-)

46116862 .. 46119837

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCGACCCAGATGAGCAAGAAGCGAAAGAGCTTCCCACCGGTGAACGACCGGGGAGCACGAATTGACCTTGATTTGGCTCAGGCAGAGGTCACCTGTTTGTTTGGCCGGACCCGGGCCAGGAAGGCTGAGAATGAGCTTCTGGTGGGCGATGTGGTGGATGTAATGAGCGACGACGAGCCTAGAAACGATGTGGCGGAGTCGAAGGTCACCGAAGACGAATTGAAGAACGGTCTTGTGGAGATGGTTATGGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

86

Amino Acids

9.61

Weight (kDa)

4.67

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	76, 115, 120
AgeI	ACCGGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	2 cut(s)	33, 139
AluI	AGCT	2 cut(s)	33, 139
Alw21I	GWGCWC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	106, 117
AsiGI	ACCGGT	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	111, 117
AsuC2I	CCSGG	3 cut(s)	53, 115, 116
AsuHPI	GGTGA	3 cut(s)	55, 85, 202
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	61
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	121
BcnI	CCSGG	3 cut(s)	53, 115, 116
BfaI	CTAG	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	125
Bme1390I	CCNGG	4 cut(s)	53, 115, 116, 121
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	111, 117
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	4 cut(s)	53, 115, 116, 121
BpiI	GAAGAC	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	3 cut(s)	53, 115, 116
BsaJI	CCNNGG	2 cut(s)	52, 114
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 115, 120
Bse118I	RCCGGY	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	52, 114
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	76, 115, 120
BseMII	CTCAG	2 cut(s)	95, 120
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	108, 119
BshTI	ACCGGT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	4 cut(s)	41, 52, 109, 115
BslI	CCNNNNNNNGG	3 cut(s)	76, 115, 120
BsnI	GGCC	2 cut(s)	108, 119
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	108, 119
BspCNI	CTCAG	2 cut(s)	94, 121
BspLI	GGNNCC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	52, 114
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	81, 129
BstEII	GGTNACC	2 cut(s)	91, 208
BstF5I	GGATG	1 cut(s)	166
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	121
BstPI	GGTNACC	2 cut(s)	91, 208
BstSCI	CCNGG	4 cut(s)	51, 113, 114, 119
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	108, 119
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	111, 117
Cfr9I	CCCGGG	1 cut(s)	114
CspAI	ACCGGT	1 cut(s)	40
CviJI	RGCY	7 cut(s)	33, 80, 108, 119, 128, 139, 181
CviKI_1	RGCY	7 cut(s)	33, 80, 108, 119, 128, 139, 181
DdeI	CTNAG	2 cut(s)	81, 129
EaeI	YGGCCR	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	114
Eco91I	GGTNACC	2 cut(s)	91, 208
EcoO65I	GGTNACC	2 cut(s)	91, 208
EcoRII	CCWGG	1 cut(s)	119
FaiI	YATR	1 cut(s)	251
FokI	GGATG	1 cut(s)	173
FspBI	CTAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	108, 119
HapII	CCGG	4 cut(s)	41, 52, 109, 115
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	4 cut(s)	41, 52, 109, 115
HphI	GGTGA	3 cut(s)	55, 85, 202
Hpy166II	GTNNAC	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	176, 179
HpyAV	CCTTC	2 cut(s)	118, 199
HpyCH4III	ACNGT	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	81, 129
LmnI	GCTCC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	91, 208
MboII	GAAGA	2 cut(s)	227, 238
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	63, 221, 256
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	1 cut(s)	82
MspI	CCGG	4 cut(s)	41, 52, 109, 115
MspR9I	CCNGG	4 cut(s)	53, 115, 116, 121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	3 cut(s)	53, 115, 116
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	91, 208
PinAI	ACCGGT	1 cut(s)	40
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	119
PspEI	GGTNACC	2 cut(s)	91, 208
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	111, 117
Sau96I	GGNCC	2 cut(s)	111, 117
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	4 cut(s)	53, 115, 116, 121
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	6 cut(s)	35, 72, 93, 98, 141, 210
SgrAI	CRCCGGYG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	111
SmaI	CCCGGG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	63, 221, 256
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	51, 113, 114, 119
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	63, 221, 256
TseFI	GTSAC	2 cut(s)	91, 208
Tsp45I	GTSAC	2 cut(s)	91, 208
TspMI	CCCGGG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	111
XmaI	CCCGGG	1 cut(s)	114
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.