Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Reverse (-)

52846689 .. 52847105

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGGAGGTGGCGTTTGACTGGTGGAGCACGCCAGATCTGAGCAGCAAGTCGAGGTCGCAGAGGTGGTTGGTGACGGACGCGGCGGACATGTCGAGGCGGACCCGGGCCAGGAAGGCTCAGAATGAGCTTCCGGTGAGCGATGTGGTGAATCTAATGAGCGACGATGAGCCTAGAAACGATGTGGCGGAGTCGAAGGTCACCGAAGACGAATTGAAGAACGGTGTTGTGGAGATGGTTATGGATAATGAGCAAAAAGTTGGGTCTGTTGGTAACAAAGATGAGGCAGTAGACACATTATTGGCCCCCAGTAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

4.5

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	291, 313
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	83, 86, 100, 188
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	108, 303
ApeKI	GCWGC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	102, 108, 304
AsuC2I	CCSGG	2 cut(s)	106, 107
AsuHPI	GGTGA	4 cut(s)	85, 148, 160, 193
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	106, 107
BfaI	CTAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	46, 84
BlsI	GCNGC	2 cut(s)	47, 85
Bme1390I	CCNGG	3 cut(s)	106, 107, 112
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	3 cut(s)	102, 108, 304
BmiI	GGNNCC	2 cut(s)	104, 306
BmrFI	CCNGG	3 cut(s)	106, 107, 112
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	213
BpuMI	CCSGG	2 cut(s)	106, 107
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	26, 309
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	32, 134
BseNI	ACTGG	2 cut(s)	26, 309
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	110, 305
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	106, 134
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	2 cut(s)	110, 305
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	4 cut(s)	83, 86, 100, 188
BspANI	GGCC	2 cut(s)	110, 305
BspCNI	CTCAG	2 cut(s)	33, 133
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	104, 306
BsrI	ACTGG	2 cut(s)	26, 309
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	41, 120
BstEII	GGTNACC	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	94
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	3 cut(s)	104, 105, 110
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	110, 305
BtgZI	GCGATG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	102, 108, 304
Cfr9I	CCCGGG	1 cut(s)	105
CseI	GACGC	1 cut(s)	89
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	110, 119, 130, 172, 305
CviKI_1	RGCY	5 cut(s)	110, 119, 130, 172, 305
DdeI	CTNAG	2 cut(s)	41, 120
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EciI	GGCGGA	3 cut(s)	101, 115, 203
Eco47I	GGWCC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 242
FatI	CATG	1 cut(s)	90
FblI	GTMKAC	2 cut(s)	291, 313
Fnu4HI	GCNGC	2 cut(s)	46, 84
Fsp4HI	GCNGC	2 cut(s)	46, 84
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	2 cut(s)	46, 84
HaeIII	GGCC	2 cut(s)	110, 305
HapII	CCGG	2 cut(s)	106, 134
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	151, 191
HpaII	CCGG	2 cut(s)	106, 134
HphI	GGTGA	4 cut(s)	85, 148, 160, 193
Hpy166II	GTNNAC	2 cut(s)	292, 314
Hpy188I	TCNGA	2 cut(s)	42, 123
Hpy8I	GTNNAC	2 cut(s)	292, 314
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	109, 190
HpyCH4III	ACNGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	41, 120
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	6 cut(s)	7, 48, 97, 119, 124, 147
Lsp1109I	GCAGC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	3 cut(s)	73, 199, 272
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	218, 229
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	4 cut(s)	48, 57, 90, 277
MspI	CCGG	2 cut(s)	106, 134
MspR9I	CCNGG	3 cut(s)	106, 107, 112
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	2 cut(s)	106, 107
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	104, 306
NmuCI	GTSAC	2 cut(s)	73, 199
NspI	RCATGY	1 cut(s)	94
PciI	ACATGT	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	47, 85
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	104, 306
PspPI	GGNCC	3 cut(s)	102, 108, 304
PsuI	RGATCY	1 cut(s)	37
SatI	GCNGC	2 cut(s)	46, 84
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	3 cut(s)	102, 108, 304
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	106, 107, 112
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	5 cut(s)	12, 59, 68, 132, 201
SinI	GGWCC	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	4 cut(s)	83, 86, 100, 188
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	104, 105, 110
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	53, 95, 194
TasI	AATT	1 cut(s)	212
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	73, 199
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	2 cut(s)	73, 199
TspGWI	ACGGA	1 cut(s)	92
TspMI	CCCGGG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	94
XmaI	CCCGGG	1 cut(s)	105
XmiI	GTMKAC	2 cut(s)	291, 313
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.