Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Forward (+)

9572735 .. 9573152

Gene Structure 418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGGAGTTGGCGTTTGACTGGTGGAGCATGCCAGATCTGAGCAGCAAGTCGAGGTCACAGAGCTGGTTGGTGACGGACGCGGGGGACATGTCGAGGACTCGAGCCAGGAAGGCTCAGAATGAGCTTCCGGTGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAACGATGTGGTGGAGTCGAAGGTCACCGAAGACAAATTGAAGAACGGTGTTGTGGAGATGGTTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAACGAAGATGAGGCAGTAGACACATTATTGGCCCCCAGTAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

106

Amino Acids

11.69

Weight (kDa)

4.23

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	288, 310
AccII	CGCG	1 cut(s)	83
AciI	CCGC	2 cut(s)	5, 83
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	66, 127
AluI	AGCT	2 cut(s)	66, 127
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	85, 145, 190
AvaI	CYCGRG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	109
BfaI	CTAG	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	26, 306
BseBI	CCWGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	32, 131
BseNI	ACTGG	2 cut(s)	26, 306
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	37, 148
BspACI	CCGC	2 cut(s)	5, 83
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	33, 130
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	26, 306
BssMI	GATC	2 cut(s)	37, 148
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	41, 117
BstEII	GGTNACC	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	40, 151
BstMBI	GATC	2 cut(s)	37, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 113
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	2 cut(s)	34, 94
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	37, 148
BstYI	RGATCY	2 cut(s)	37, 148
BsuRI	GGCC	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	89
CviAII	CATG	2 cut(s)	31, 91
CviJI	RGCY	6 cut(s)	66, 107, 116, 127, 169, 302
CviKI_1	RGCY	6 cut(s)	66, 107, 116, 127, 169, 302
DdeI	CTNAG	2 cut(s)	41, 117
DpnI	GATC	2 cut(s)	39, 150
DpnII	GATC	2 cut(s)	37, 148
EciI	GGCGGA	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	34, 94
FaiI	YATR	3 cut(s)	32, 92, 239
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	30, 90
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	2 cut(s)	288, 310
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	34, 94
HinfI	GANTC	2 cut(s)	100, 188
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	85, 145, 190
Hpy166II	GTNNAC	2 cut(s)	289, 311
Hpy188I	TCNGA	2 cut(s)	42, 120
Hpy8I	GTNNAC	2 cut(s)	289, 311
Hpy99I	CGWCG	2 cut(s)	164, 167
HpyAV	CCTTC	2 cut(s)	106, 187
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 113
HpyF3I	CTNAG	2 cut(s)	41, 117
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	34, 94
Kzo9I	GATC	2 cut(s)	37, 148
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	6 cut(s)	7, 48, 52, 94, 121, 144
Lsp1109I	GCAGC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	4 cut(s)	57, 73, 196, 269
MalI	GATC	2 cut(s)	39, 150
MboI	GATC	2 cut(s)	37, 148
MboII	GAAGA	3 cut(s)	215, 226, 287
MflI	RGATCY	2 cut(s)	37, 148
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	94, 197
MnlI	CCTC	3 cut(s)	48, 90, 274
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	11, 113
NdeII	GATC	2 cut(s)	37, 148
NlaIII	CATG	2 cut(s)	34, 94
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	3 cut(s)	57, 73, 196
NspI	RCATGY	2 cut(s)	34, 94
PaeI	GCATGC	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	102
PciI	ACATGT	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	94, 196
PpsI	GAGTC	2 cut(s)	94, 196
PscI	ACATGT	1 cut(s)	90
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	107
PspEI	GGTNACC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	301
PspXI	VCTCGAGB	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	37, 148
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	2 cut(s)	37, 148
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	2 cut(s)	94, 197
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	5 cut(s)	59, 68, 129, 198, 258
Sfr274I	CTCGAG	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	5, 83
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	53, 95, 103, 191
TasI	AATT	1 cut(s)	209
TseFI	GTSAC	3 cut(s)	57, 73, 196
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	3 cut(s)	57, 73, 196
TspGWI	ACGGA	1 cut(s)	92
XceI	RCATGY	2 cut(s)	34, 94
XhoI	CTCGAG	1 cut(s)	102
XmiI	GTMKAC	2 cut(s)	288, 310
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.