Rh1DG041700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014852
Physical Location & Seq
Forward (+)
6670129 .. 6670383
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG041700.1

Sequence Viewer

Length: 255 bp
ATGGAGGAGGCGCCGATCGAGTGGTTCTGCGTTGCCGGAGAAGGCGCCGATGAAGACGGAAACAGAGGAGGTGTTTTCCGGGTCGCCGATGAGGCCTCGACGGTGATTGCGCGACTCATCGTTTGCGGCGGCGAGGGGCGAGATGGCGGAGTGGCGTTTGACTGGTGGAGGATGCCAGATCTGAGCAGCAAGTCGAGGTCGCAAAGCTGCTTGGTGACGGACGCGGTGGACATGTTGAGGTCATTCTGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.12

Weight (kDa)

4.32

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 10, 44
AccII CGCG 2 cut(s) 112, 224
AciI CCGC 4 cut(s) 126, 129, 147, 224
AcyI GRCGYC 2 cut(s) 11, 45
AflIII ACRYGT 1 cut(s) 231
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 186, 207
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspLEI GCGC 3 cut(s) 13, 47, 112
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 115, 226
BanI GGYRCC 2 cut(s) 10, 44
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 194, 198
BccI CCATC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 80
BfoI RGCGCY 2 cut(s) 14, 48
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 178
BisI GCNGC 4 cut(s) 127, 130, 187, 208
BlsI GCNGC 4 cut(s) 128, 131, 188, 209
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 12, 46
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 80
BsaHI GRCGYC 2 cut(s) 11, 45
Bse1I ACTGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 2 cut(s) 20, 81
BseXI GCAGC 2 cut(s) 194, 198
Bsh1236I CGCG 2 cut(s) 112, 224
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 2 cut(s) 10, 44
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 2 cut(s) 36, 79
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 15, 178
BspACI CCGC 4 cut(s) 126, 129, 147, 224
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 2 cut(s) 112, 224
BspLI GGNNCC 2 cut(s) 12, 46
BspT107I GGYRCC 2 cut(s) 10, 44
BsrI ACTGG 1 cut(s) 167
BssMI GATC 2 cut(s) 15, 178
BssNI GRCGYC 2 cut(s) 11, 45
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 2 cut(s) 11, 45
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 2 cut(s) 112, 224
BstH2I RGCGCY 2 cut(s) 14, 48
BstHHI GCGC 3 cut(s) 13, 47, 112
BstKTI GATC 2 cut(s) 18, 181
BstMBI GATC 2 cut(s) 15, 178
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 235, 253
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 2 cut(s) 112, 224
BstV1I GCAGC 2 cut(s) 194, 198
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 177
CfoI GCGC 3 cut(s) 13, 47, 112
CseI GACGC 1 cut(s) 230
CviAII CATG 2 cut(s) 232, 250
CviJI RGCY 2 cut(s) 95, 207
CviKI_1 RGCY 2 cut(s) 95, 207
DdeI CTNAG 1 cut(s) 182
DinI GGCGCC 2 cut(s) 12, 46
DpnI GATC 2 cut(s) 17, 180
DpnII GATC 2 cut(s) 15, 178
EciI GGCGGA 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 95
EgeI GGCGCC 2 cut(s) 12, 46
EheI GGCGCC 2 cut(s) 12, 46
FaeI CATG 2 cut(s) 235, 253
FaiI YATR 2 cut(s) 233, 251
FatI CATG 2 cut(s) 231, 249
Fnu4HI GCNGC 4 cut(s) 127, 130, 187, 208
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 127, 130, 187, 208
GlaI GCGC 3 cut(s) 12, 46, 111
GluI GCNGC 4 cut(s) 127, 130, 187, 208
HaeII RGCGCY 2 cut(s) 14, 48
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 36, 79
HgaI GACGC 1 cut(s) 230
HhaI GCGC 3 cut(s) 13, 47, 112
Hin1I GRCGYC 2 cut(s) 11, 45
Hin1II CATG 2 cut(s) 235, 253
Hin6I GCGC 3 cut(s) 11, 45, 110
HinP1I GCGC 3 cut(s) 11, 45, 110
HinfI GANTC 1 cut(s) 114
HpaII CCGG 2 cut(s) 36, 79
HphI GGTGA 2 cut(s) 115, 226
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 2 cut(s) 11, 45
Hsp92II CATG 2 cut(s) 235, 253
HspAI GCGC 3 cut(s) 11, 45, 110
KasI GGCGCC 2 cut(s) 10, 44
Kzo9I GATC 2 cut(s) 15, 178
LpnPI CCDG 4 cut(s) 49, 92, 148, 189
Lsp1109I GCAGC 2 cut(s) 194, 198
LweI GCATC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 17, 180
MboI GATC 2 cut(s) 15, 178
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 178
Mly113I GGCGCC 2 cut(s) 11, 45
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 8 cut(s) 59, 62, 85, 106, 127, 162, 189, 231
MspI CCGG 2 cut(s) 36, 79
MspR9I CCNGG 1 cut(s) 80
MvnI CGCG 2 cut(s) 112, 224
MwoI GCNNNNNNNGC 1 cut(s) 92
NarI GGCGCC 2 cut(s) 11, 45
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 15, 178
NlaIII CATG 2 cut(s) 235, 253
NlaIV GGNNCC 2 cut(s) 12, 46
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 235, 253
PceI AGGCCT 1 cut(s) 95
PciI ACATGT 1 cut(s) 231
PkrI GCNGC 4 cut(s) 128, 131, 188, 209
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 1 cut(s) 108
PluTI GGCGCC 2 cut(s) 14, 48
PpsI GAGTC 1 cut(s) 108
PscI ACATGT 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 12, 46
PsuI RGATCY 1 cut(s) 178
PvuI CGATCG 1 cut(s) 18
SatI GCNGC 4 cut(s) 127, 130, 187, 208
Sau3AI GATC 2 cut(s) 15, 178
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 80
SetI ASST 4 cut(s) 73, 200, 209, 242
SfaNI GCATC 1 cut(s) 162
SfoI GGCGCC 2 cut(s) 12, 46
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 4 cut(s) 126, 129, 147, 224
SspDI GGCGCC 2 cut(s) 10, 44
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 3 cut(s) 18, 98, 194
TauI GCSGC 2 cut(s) 129, 132
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 186, 207
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 2 cut(s) 72, 233
XceI RCATGY 2 cut(s) 235, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.